BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30870.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482004 jgi|Araly1|482004|fgenesh2_kg.4__1064__AT2G30870.1 1447 0.0
> Ahg482004 jgi|Araly1|482004|fgenesh2_kg.4__1064__AT2G30870.1
Length=943
Score = 1447 bits (783), Expect = 0.0
Identities = 903/957 (94%), Gaps = 23/957 (2%)
Strand=Plus/Plus
Query 13 ACCGCAAACGCAGCTAACCAGATCCCTTTTTCTCTCTCTTTTCTTTCCCTCTATAAAATC 72
|||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||
Sbjct 1 ACCGCAAACGCAGCTAACCAGATCCC--TTT-TCTCTC---TCTTTCCCTCTATAAAATC 54
Query 73 GCGT-C---C-TGCTATAGTGAGTTTAGAAAGAAACTGATAGTAGaaaaaaaaaGAGAGA 127
|||| | | |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 55 GCGTCCTTGCTTGCTATAGTGAGTTTAGAAAGAAACTGATAGTAG--AAAAAAAGAGAGA 112
Query 128 AGAAAAATGGTGTTGACAATCTATGCTCCTTTATTCGCTTCTTCAAAGAGAGCTGTTGTG 187
||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 113 AGAAAAATGGTGTTGACGATCTATGCGCCTTTATTCGCTTCTTCGAAGAGAGCTGTTGTA 172
Query 188 ACATTGGTGGAGAAGGGAGTATCATTCGAAACTGTCAATGTCGATCTCATGAAAGGAGAA 247
|| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 173 ACTTTGGTGGAGAAGGGAGTATCATTCGAGACCGTCAATGTCGATCTCATGAAAGGAGAA 232
Query 248 CAGAGACAGCCTGAGTATCTCGCGATTCAGCCTTTCGGTAAAATCCCAGTCCTCGTCGAC 307
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 233 CAGAGACAGCCTGAGTATCTCGCGATTCAGCCTTTTGGTAAAATCCCAGTGCTCGTCGAC 292
Query 308 GGAGACTACAAAATCTTCGAGTCGCGTGCGATCATGAGGTATATAGCAGAGAAGTATAGA 367
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 293 GGAGACTACAAAATCTTCGAGTCACGTGCGATCATGAGGTATATAGCAGAGAAGTATAGA 352
Query 368 TCACAAGGACCTGATCTTTTGGGGAAGACTATTGAAGAGAGAGGACAAGTAGAGCAATGG 427
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 353 TCACAAGGACCTGATCTGTTGGGGAAGACGATTGAAGAGAGAGGACAAGTAGAGCAATGG 412
Query 428 -TTAGACGTTGAGGCTACAAGTTACCATCCACCACTATTGGCTTTAACGCTCAACATTGT 486
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CTT-GACGTTGAGGCTACTAGTTACCATCCACCACTATTGGCTTTAACGCTCAACATTGT 471
Query 487 CTTTGCACCACTTATGGGTTTCCCTGCTGATGAGAAAGTTATTAAGGAGAGTGAAGAGAA 546
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 472 CTTTGCACCACTCATGGGTTTTCCTGCTGATGAGAAAGTTATTAAGGAGAGTGAAGAGAA 531
Query 547 GCTTGCAGAAGTGCTTGATGTCTATGAAGCTCAGCTTTCTAAGAACGAATACTTGGCTGG 606
||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 532 GCTTGGAGAAGTGCTTGATGTCTATGAAGCTCAGCTTTCAAAGAATGAATACTTGGCTGG 591
Query 607 TGATTTTGTGAGTCTAGCTGATTTGGCTCACCTTCCTTTCACCGAGTATCTTGTTGGTCC 666
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 592 TGATTTTGTGAGTCTAGCTGATTTGGCTCACCTTCCGTTCACTGAGTATCTCGTTGGTCC 651
Query 667 TATTGGGAAGGCTCATTTGATCAAAGATAGGAAGCATGTTAGCGCTTGGTGGGATAAGAT 726
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 652 TATTGGGAAGGCTCATTTGATCAAGGATAGGAAGCATGTTAGCGCGTGGTGGGATAAGAT 711
Query 727 TAGTAGCCGTGCTGCGTGGAAGGAGGTTTCCGCTAAGTACTCACTACCTGTTTAAACAAG 786
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 712 TAGTAGCCGTGCTGCGTGGAAGGAGGTTTCCGCAAAGTACTCACTACCTGTTTAAACAAG 771
Query 787 GAGATGTTGACTTGGGGGGTTTGTGTGAGCTTTGTGTTCTT-TGAGGGAGTTCGTTTTCG 845
||||||||||||||||| |||||||||||||||||| ||| ||||||||| ||||| ||
Sbjct 772 GAGATGTTGACTTGGGG--TTTGTGTGAGCTTTGTGT-CTTGTGAGGGAGTCCGTTT-CG 827
Query 846 GGTCGATTGTCT-TGTTGTTTCAATAAGAAACGGAACTCTGTCTCATTTGTTGTCTCTGG 904
|||||||||||| | |||||||| |||| |||||||||||| |||||||||| |||||||
Sbjct 828 GGTCGATTGTCTCT-TTGTTTCATTAAGGAACGGAACTCTGCCTCATTTGTTATCTCTGG 886
Query 905 TTTCTTGTATTCTGTAACT-TTTCAAGCTTTTCAATAAGAGTTTAAAATCAGAGTGA 960
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 887 TTTCTTGTATTTTGTAACCCTTTCAAGCTTTTCAATAAGAGTTTAAAATCAGAGTGA 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5