BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30880.1
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482005 jgi|Araly1|482005|fgenesh2_kg.4__1065__AT2G30880.1 3009 0.0
> Ahg482005 jgi|Araly1|482005|fgenesh2_kg.4__1065__AT2G30880.1
Length=1961
Score = 3009 bits (1629), Expect = 0.0
Identities = 1839/1939 (95%), Gaps = 20/1939 (1%)
Strand=Plus/Plus
Query 46 ttcttcttcttctGTAACCTCGTCTTCTTCAGCTTATA-CTCATAGCTATACCAAAGAAA 104
||||||||||||| |||||||||||||||||||| ||| || | | | | | ||| |||
Sbjct 33 TTCTTCTTCTTCTTTAACCTCGTCTTCTTCAGCTCATACCT-A-AACCA-A--AAACAAA 87
Query 105 ACCTCTTAAAA-CCC-TTCTTCTCTCGATCCATCGATCAGCAACAATTCACTTCTAATCG 162
|||| |||||| ||| || |||||||||| ||||||||||||| | || |||||||||
Sbjct 88 ACCT-TTAAAACCCCATT-TTCTCTCGATTCATCGATCAGCAATTGTCCATTTCTAATCG 145
Query 163 ATC-AAGAGCTTTCCGATCTCGTCGATCCCAATTAACATGGCTTCCAACGGCGCTTCTCC 221
||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 146 ATCAAAGAGCTTCCCGATCTCGTCGATCCTAATTAACATGGCTTCCAACGGCGCTTCTCC 205
Query 222 GAGAATTGTTGATGCTACTGAGAACAGCTTGGATAAGATCAAGCGACAATTGGCATCTGG 281
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 206 GAGAATTGTTGATGCTACTGAGAACAGCTTGGATAAGATCAAGCGGCAATTGGCATCTGG 265
Query 282 CTCTGGTCGGAACTTGCTACAAGGACCTCTTTTCAAGCGATCTGAAACTCTGAGAAAATG 341
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 266 CTCTGGTCGGAACTTGCTTCAGGGACCTCTTTTCAAGCGATCTGAAACTCTGAGAAAATG 325
Query 342 GAACGAACGATGGGTGATACTTGATCCAACAACAGGGAAAATGGAGTATAAGACGAGGCG 401
||||||| |||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 326 GAACGAAAGATGGGTGATACTTGACCCAACAACAGGGAAAATGGAGTATAAGACAAGACG 385
Query 402 AAATGAGCCAACTATCAAGGGAACAATTTTGTTTGACGAAAATAGCACAATCTCCATCTC 461
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 AAACGAACCAACTATCAAGGGAACAATTTTGTTTGACGAAAATAGCACAATCTCCATCTC 445
Query 462 TCCTGTCAACTTCCAGGGGCTTCCAAAATATAATGGTTGCTGTATTTATATTGGTACCCC 521
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 446 TCCTGTCAACTTCCAGGGGCTTCCAAAATATAATGGTTGCTGTATCTATATTGGTACCCC 505
Query 522 ACAGAAGAAAGATTACTTTTTGTGTGCAGAGACTCCTGGTGCAGCTAAAGCTTGGGTCAC 581
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 506 ACAGAAGAAAGATTACTTTTTGTGTGCAGAGACTCCTGGTGCAGCTAAGGCTTGGGTCAC 565
Query 582 AACCTTACATGCGACACAGCTAGTTCTAAAGGCCCATAAGGAGGCTGTCGAATCTCTAAG 641
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 566 AACCTTACATGCGACACAGCTAGTCCTAAAGGCCCATAAGGAGGCTGTCGAATCTCTAAG 625
Query 642 TGGAAGTGGTTCTGCAACACTTGGTACCGTTGCAACCGTTGTTGCCGCTGCCAATTCAAC 701
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 CGGAAGTGGTTCTGCAACACTTGGTACCGTTGCAACCGTTGTTGCCGCTGCCAATTCAAC 685
Query 702 AGCATTGGAATGTTCCAGAGAAATTCAAGCAGCAATGCAGATCTCTTTGAGGAATGCATT 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 AGCATTGGAATGTTCCAGAGAAATTCAAGCAGCAATGCAGATCTCTTTGAGGAATGCATT 745
Query 762 GAAAATAACGCCAAATAAACCGATTGATGGACCACTAGATGATTTGACAATAATGAAGGA 821
|||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 746 GAAAATAACGGCAAATAAACCGATCGAGGGACCACTAGATGATTTGACAATAATGAAGGA 805
Query 822 AACTCTGCGTGTCAAAGATGAAGAATTACATAATTTAGC-CAGGGAACTTCGTTCTCGTG 880
|||||| ||||||||||||||||||||||||||||| || | | ||||||||||||||||
Sbjct 806 AACTCTACGTGTCAAAGATGAAGAATTACATAATTTGGCTC-GAGAACTTCGTTCTCGTG 864
Query 881 ACTCAATGATAAAGGAAATAGCAGATAAGCTATCTGAGACTGCTGAAGCAGCTGTAGCTG 940
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 865 ACGCAATGATAAAGGAAATAGCAGATAAGCTATCTGAGACTGCTGAAGCAGCTGTAGGTG 924
Query 941 CAGCATCTGCTGCTCATACAATGGATGAACAAAGGAAAATCGTTTGTGTGGAATTTGAGC 1000
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 CAGCATCTGCAGCTCATACAATGGATGAACAAAGGAAAATCGTTTGTGTGGAATTTGAGC 984
Query 1001 GCTTGACTACAGACTCACAGAGACAGCAAGAAGCCACAAAATTAAAGCTCAAGGAATTGG 1060
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 985 GCTTGACTAAAGACTCACAGAGACAGCAAGAAGCCGCAAAATTAAAGCTCAAGGAATTGG 1044
Query 1061 AAGAGAAGACCTTTACTTTGAGTAAGGAAAAAGATCAATTGGTTAAGGAAAGAGACGCTG 1120
|||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1045 AAGAGAAGACATCTACTCTGAGTAAGGAAAAGGATCAATTGGTTAAGGAAAGAGACGCTG 1104
Query 1121 CTCTCCAAGAGGCACATATGTGGCGGTCTGAGCTTGGGAAAGCCAGAGAGCGTGTTGTCA 1180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1105 CTCTCCAAGAGGCACATATGTGGCGGTCTGAGCTTGGAAAAGCCAGAGAGCGTGTTGTCA 1164
Query 1181 TACTTGAAGGAGCTGTTGTGAGGGCCGAAGAGAAAGTGAGGGTTGCAGAAGCAAGCGGTG 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1165 TACTTGAAGGAGCTGTTGTGAGGGCCGAAGAGAAAGTGAGGGTTGCAGAAGCAAGTGGTG 1224
Query 1241 AAGCAAAATCAAAAGAGGCTTCTCAGAGAGAAGCAACTGCTTGGACAGAGAAGCAAGAGC 1300
| |||||| |||| ||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1225 AGGCAAAAGCAAAGGAGGCTTCTCAGAGAGAGGCAGCTGCTTGGACAGAGAAGCAAGAGC 1284
Query 1301 TTTTAGCATATGTGAATATGTTACAAACTCAGCTTCAAAGGCAGCAACTAGAGACAAAGC 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1285 TTTTAGCATATGTGAATATGTTACAAACTCAGCTTCAAAGGCAGCAACTAGAGACGAAGC 1344
Query 1361 AAGTGTGTGAGGAGAAGACTGAGTCTACTAACGGCGAAGCTTCTCTTCCAATGACAAAGG 1420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1345 AAGTGTGTGAGGAGAAGACTGAGTCTACGAACGGCGAAGCTTCTCTTCCAATGACAAAGG 1404
Query 1421 AAACAGAAAAGAATGTGGATAAAGCATGTCTGAGCATTTCAAGAACAGCCTCTATACCGG 1480
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1405 AAACAGAAAAGAATGTGGATAAAGCATGTCTGAGTATTTCAAGAACAGCCTCAATACCGG 1464
Query 1481 GAGAGAATGTAGTCCATATGAGTGAAGAGCAGGTAGTAAACGCTCAGCCTCCGGTGGGAG 1540
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1465 GAGAGAGTGTAGTCCATATGAGTGAAGAACAGGTAGTAAACGCTCAGCCTCCGGTTGGAG 1524
Query 1541 AAAACGAATGGAATGATATTCAGGCAACAGAGGCAAGAGTTTCTGATGTAAGAGAAATAT 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 AAAACGAATGGAATGATATTCAGGCAACAGAGGCAAGAGTTTCTGATGTAAGAGAAATAT 1584
Query 1601 CTGCAGAGACTGAACGGGACAGAAGAAACAGCTTGGATATCCCGGTAGTGTCTCCTGAAC 1660
|||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 1585 CTGCAGAGACTGAACGGGACAGAAGAAATAGCATGGATATCCCGGTAGTGACTCCTGAAC 1644
Query 1661 CTAACGTTCCACGCAATGATCCGCCTTCCGAATCATTTCATCACCAGCCTTGAATAAA-G 1719
|||| ||||||||||||||||||||||| ||||| |||||||| ||||||||| | || |
Sbjct 1645 CTAATGTTCCACGCAATGATCCGCCTTCAGAATCTTTTCATCATCAGCCTTGA-TGAATG 1703
Query 1720 ATTGGTAGATCTTCGTACATTTTAATATACTCTTTGATGGTCTGGTAATGTTTGGAGAGT 1779
||||||||||||||||||||||| |||||||||| |||| ||| |||||||||||||||
Sbjct 1704 ATTGGTAGATCTTCGTACATTTTTATATACTCTT-GATGTTCTATTAATGTTTGGAGAGT 1762
Query 1780 TGATTCTTCTAACAACAAAAAGAATTTGTCTTTTTAGTTTTCTTGTACATTCAAGAGTTG 1839
||||| ||||||||| |||||||||||| |||||| |||||||||||| |||||||||||
Sbjct 1763 TGATTGTTCTAACAAGAAAAAGAATTTGCCTTTTTGGTTTTCTTGTACCTTCAAGAGTTG 1822
Query 1840 T-TATGTATCTGCCGCTCTTGAATTTGTCTGACTAGGGAATGATTCTT-TTTCCCTTTTA 1897
| ||||||||||| ||||||||| ||||||||||||||| ||||||| |||||| | ||
Sbjct 1823 TCTATGTATCTGCAGCTCTTGAACTTGTCTGACTAGGGAGGGATTCTTCTTTCCCCTGTA 1882
Query 1898 TTACAACATGAAGAACAGAGAGATATGTGTT-AAA-CTTTGACTTATGTTTTTGGATTCA 1955
||||||| |||||||||||||||| |||||| ||| ||||||||||||||||||||||||
Sbjct 1883 TTACAACTTGAAGAACAGAGAGATGTGTGTTTAAAACTTTGACTTATGTTTTTGGATTCA 1942
Query 1956 TATAAACCAGTTTTCATAT 1974
|||||||||||||||||||
Sbjct 1943 TATAAACCAGTTTTCATAT 1961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74199797260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5