BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30890.1
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900871 jgi|Araly1|900871|Al_scaffold_0004_1521 1164 0.0
Ahg887931 jgi|Araly1|887931|Al_scaffold_0283_1 1153 0.0
> Ahg900871 jgi|Araly1|900871|Al_scaffold_0004_1521
Length=774
Score = 1164 bits (630), Expect = 0.0
Identities = 730/778 (94%), Gaps = 8/778 (1%)
Strand=Plus/Plus
Query 154 ATGGAGATTCATCATCAACTCTTAGtctctctcctcttcctcctccttcccctatgctcc 213
||||||||||| ||||| ||||| |||| ||||||| ||||||| |||||||||||| ||
Sbjct 1 ATGGAGATTCACCATCACCTCTTCGTCTTTCTCCTCCTCCTCCTTCTTCCCCTATGCACC 60
Query 214 tccCAAGAAAACACCAGAAGCTTGGCCATTGATGTCAATGGTCCAGTCGAAACTTCTCCT 273
||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 61 TCCCAAGAAAATACCAGAAGCTTGGCCATTGATGTCAATGGTCAAGTCGAAACAAGTCTT 120
Query 274 ATCTCCGAGAAACTAAATCCAAAGCTTGTGTACGAAATCAAAGTGCATGGCTTTATGCTT 333
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 ATCTCCGAGAAACTAAATCCAAAGCTTGTGTACGAAATCAAAGTGCATGGATTTATGCTT 180
Query 334 TGGGCAGCGATGGGTGTTTTGA-TGCCAATTGGTATAATCTCCATCAGATTAATGTCTAT 392
|||||| ||||||||||||| | ||||||||||||||||||||||||||||||| |||||
Sbjct 181 TGGGCATCGATGGGTGTTTT-ACTGCCAATTGGTATAATCTCCATCAGATTAATATCTAT 239
Query 393 CAAAGACCAACCTATAATCACTCTTCGACGACTCTTCTTTCTTCATGTCACTTCTCAGAT 452
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 240 CAAAGACCAACCTATAATCACTCTTCGACGACTGTTCTTTCTTCATGTCATTTCTCAGAT 299
Query 453 GGTTGCAGTGATACTTGTGACAATAGGGGCAGTAATGTC-AGTAATAAACTTCAACAATT 511
||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||
Sbjct 300 GGTTGCAGTGATACTTGTGACAATAGGGGCAATAATGTCGATTAA-AAACTTCAACAATT 358
Query 512 CCTTCAGTAATCATCACCAACAGCTTGGAATTGGACTTTACG-TCATTGTATGGTTCCAA 570
|||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 359 CCTTCAATAATCATCACCAACAGCTTGGAATTGGACTTTACGCT-ATTGTATGGTTCCAA 417
Query 571 GCTCTTCTTGGCTTCCTCCGACCTCCAAGAGAAGAAAAAGCTAGAAGGAAGTGGTTTGTA 630
||||||||||||||||||||||||||||| | || |||| ||||||||||||||||||||
Sbjct 418 GCTCTTCTTGGCTTCCTCCGACCTCCAAGGGGAGGAAAATCTAGAAGGAAGTGGTTTGTA 477
Query 631 GGACATTGGATATTAGGAACATCAATTGCTATTCTTGGGATAATAAACATATACACAGGT 690
|||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||
Sbjct 478 GGACATTGGATATTAGGAACATTAATTACTATTCTTGGGATGATAAACATATACACAGGT 537
Query 691 TTACACGCTTACGCCAAAAAGACATCAAAAAGTGCTAATCTTTGGACCATACTCTTCACT 750
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 538 TTACACGCTTACGCCAAAAAGACATCAACAAGTGCTAAGCTTTGGACCATACTCTTCACG 597
Query 751 GCACAACTCTCTTGTATTGCCTTGGTCTATCTTTTTCAAGATAAATGGTCTTATATCCAA 810
||||||||| ||| ||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 598 GCACAACTCGCTTCTATTGTCTTGGTCTATCTTTTTCAAGATAAGTGGTCTTATATCCAA 657
Query 811 AGCCAAGCTACCTTTAACAGAAATCAATCCGTTGATCATAACAGCAACATCTCAACCGCA 870
|||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 658 AGCCAAACTACATTTAACAGAAATCAATCCGTTGATCATAACAGCAACATATCAACCGCA 717
Query 871 GAGACTGGCCATGGATACGAGGTCGAAGAGAG-TAAACCGGAGTTAGAGAAATGCTAA 927
||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||
Sbjct 718 GAGACTGGCCATGGAGACGAGGTCGAAGAG-GCTAAACCCGAGTTAGAGAAATGCTAA 774
> Ahg887931 jgi|Araly1|887931|Al_scaffold_0283_1
Length=774
Score = 1153 bits (624), Expect = 0.0
Identities = 728/778 (94%), Gaps = 8/778 (1%)
Strand=Plus/Plus
Query 154 ATGGAGATTCATCATCAACTCTTAGtctctctcctcttcctcctccttcccctatgctcc 213
||||||||||| ||||| ||||| |||| ||||||| ||||||| |||||||||||| ||
Sbjct 1 ATGGAGATTCACCATCACCTCTTCGTCTTTCTCCTCCTCCTCCTTCTTCCCCTATGCACC 60
Query 214 tccCAAGAAAACACCAGAAGCTTGGCCATTGATGTCAATGGTCCAGTCGAAACTTCTCCT 273
||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 61 TCCCAAGAAAATACCAGAAGCTTGGCCATTGATGTCAATGGTCAAGTCGAAACAAGTCTT 120
Query 274 ATCTCCGAGAAACTAAATCCAAAGCTTGTGTACGAAATCAAAGTGCATGGCTTTATGCTT 333
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 ATCTCCGAGAAACTAAATCCAAAGCTTGTGTACGAAATCAAAGTGCATGGATTTATGCTT 180
Query 334 TGGGCAGCGATGGGTGTTTTGA-TGCCAATTGGTATAATCTCCATCAGATTAATGTCTAT 392
|||||| ||||||||||||| | ||||||||||||||||||||||||||||||| |||||
Sbjct 181 TGGGCATCGATGGGTGTTTT-ACTGCCAATTGGTATAATCTCCATCAGATTAATATCTAT 239
Query 393 CAAAGACCAACCTATAATCACTCTTCGACGACTCTTCTTTCTTCATGTCACTTCTCAGAT 452
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 240 CAAAGACCAACCTATAATCACTCTTCGACGACTGTTCTTTCTTCATGTCATTTCTCAGAT 299
Query 453 GGTTGCAGTGATACTTGTGACAATAGGGGCAGTAATGTC-AGTAATAAACTTCAACAATT 511
||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||
Sbjct 300 GGTTGCAGTGATACTTGTGACAATAGGGGCAATAATGTCGATTAA-AAACTTCAACAATT 358
Query 512 CCTTCAGTAATCATCACCAACAGCTTGGAATTGGACTTTACG-TCATTGTATGGTTCCAA 570
|||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 359 CCTTCAATAATCATCACCAACAGCTTGGAATTGGACTTTACGCT-ATTGTATGGTTCCAA 417
Query 571 GCTCTTCTTGGCTTCCTCCGACCTCCAAGAGAAGAAAAAGCTAGAAGGAAGTGGTTTGTA 630
||||||||||||||||||||||||||||| | || |||| ||||||||||||||||||||
Sbjct 418 GCTCTTCTTGGCTTCCTCCGACCTCCAAGGGGAGGAAAATCTAGAAGGAAGTGGTTTGTA 477
Query 631 GGACATTGGATATTAGGAACATCAATTGCTATTCTTGGGATAATAAACATATACACAGGT 690
|||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||
Sbjct 478 GGACATTGGATATTAGGAACATTAATTACTATTCTTGGGATGATAAACATATACACAGGT 537
Query 691 TTACACGCTTACGCCAAAAAGACATCAAAAAGTGCTAATCTTTGGACCATACTCTTCACT 750
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 538 TTACACGCTTACGCCAAAAAGACATCAACAAGTGCTAAGCTTTGGACCATACTCTTCACG 597
Query 751 GCACAACTCTCTTGTATTGCCTTGGTCTATCTTTTTCAAGATAAATGGTCTTATATCCAA 810
||||||||| ||| ||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 598 GCACAACTCGCTTCTATTGTCTTGGTCTATCTTTTTCAAGATAAGTGGTCTTATATCCAA 657
Query 811 AGCCAAGCTACCTTTAACAGAAATCAATCCGTTGATCATAACAGCAACATCTCAACCGCA 870
|||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 658 AGCCAAACTACATTTAACAGAAATCAATCCGTTGATCATAACAGCAACATATCAACCGCA 717
Query 871 GAGACTGGCCATGGATACGAGGTCGAAGAGAG-TAAACCGGAGTTAGAGAAATGCTAA 927
|||||||| |||||| ||| |||||||||| | |||||| ||||||||||||||||||
Sbjct 718 GAGACTGGACATGGAGACGGGGTCGAAGAG-GCTAAACCCGAGTTAGAGAAATGCTAA 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40334046186
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5