BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30900.1 Length=1707 Score E Sequences producing significant alignments: (Bits) Value Ahg333274 jgi|Araly1|333274|fgenesh1_pm.C_scaffold_283000002 1657 0.0 Ahg344851 jgi|Araly1|344851|fgenesh1_pg.C_scaffold_4001193 706 0.0 Ahg900871 jgi|Araly1|900871|Al_scaffold_0004_1521 385 7e-106 Ahg887931 jgi|Araly1|887931|Al_scaffold_0283_1 374 2e-102 > Ahg333274 jgi|Araly1|333274|fgenesh1_pm.C_scaffold_283000002 Length=1101 Score = 1657 bits (897), Expect = 0.0 Identities = 1045/1114 (94%), Gaps = 20/1114 (2%) Strand=Plus/Plus Query 476 ATGATGAGAGGTGCTGCTCCCACCGGAGTAGT-ATCGGTCATGGTTTTAATGATACTTGT 534 |||||||||||||||||| | ||||||||||| || |||||||||| ||||||||||||| Sbjct 1 ATGATGAGAGGTGCTGCTTCGACCGGAGTAGTAAT-GGTCATGGTTATAATGATACTTGT 59 Query 535 GTTGTTAAAACAAATAGAGAGTGCTAGTGCGAATGGTTCATCATTAGGGCTACCACCTAG 594 ||||||||| |||| |||||||||||||| |||||||||||| | | | ||| ||| Sbjct 60 GTTGTTAAACCAAACAGAGAGTGCTAGTGTGAATGGTTCATC---A---CAATCACATAG 113 Query 595 AAAGTTTTGTAATATTTATCAAGGAAGTTGGGTCTATGACAAATCTTACCCTCTCTATGA 654 ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 114 AAAGTTTTGTAATATTTATTTAGGAAGTTGGGTCTATGATAAATCTTACCCTCTCTATGA 173 Query 655 TTCCAAGAATTGCCCTTTCATCGAGAGACAGTTTAACTGCAAGTCCAATGGTCGCCCTGA 714 |||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 174 TTCCAAGACTTGTCCTTTCATCGAGAGACAATTTAACTGCAAGTCCAATGGTCGCCCTGA 233 Query 715 CAGCGAGTACCTCAAGTATCGATGGCAACCTTCCGGTTGCAATCTCCCCAGATTCAACGG 774 || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 234 CAAAGAGTACCTCAAGTATCGGTGGCAACCTTCCGGTTGCAATCTCCCCAGATTCAACGG 293 Query 775 CTTAGATTTTCTGGGAAGGATAATGAAAGGGAAGAAACTGATGTTCGTAGGAGATTCACT 834 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 294 CTTAGATTTTCTTGGAAGGATAATGAAAGGGAAGAAACTGATGTTCGTCGGAGATTCACT 353 Query 835 GAGTCTAAACCAATGGCAATCTCTCACGTGTTTGCTCCACAACGCCGCACCAAAAGCCAA 894 |||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| Sbjct 354 GAGTCTAAACCAATGGCAATCTCTCACGTGTTTGCTCCACAACGTTGCACCAAACGTCAA 413 Query 895 TTCCA-CATCCACACGTTCCCCTTCTGGCCTCTCCGTCTTCTCATTCCCCGCTTACAATT 953 ||||| | | |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 414 TTCCACCCT-CACACGTTCCCCTTCTGGCCTCTCTGTCTTCTCATTCCCCGCTTACAATT 472 Query 954 CTTCGATTATGTTTTCAAGAAACGCGTTTCTTGTGGATATAGTCGGAGCCCCACCGAAGC 1013 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 473 CTTCGATTATGTTTTCAAGAAACGCGTTTCTGGTGGATATAGTCGGAGCCCCACCTAAGC 532 Query 1014 GAGTGATGAAGCTTGACTCAATCTCGAGTGGTTCGTTGTGGAAAACCGCAGACGTTTTGG 1073 ||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 533 GAGTGATGAAGCTCGACTCCATCTCGAGTGGTTCGTTGTGGAAAACCGCAGATGTTTTGG 592 Query 1074 TCTTCAACTCTTGGCATTGGTGGCTTCACACAGACCGAAAACAACCATGGGACGCAATTA 1133 ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||| Sbjct 593 TCTTCAACTCTTGGCATTGGTGGCTTCACACCGGCAGAAAACAACCATGGGACGCAATTA 652 Query 1134 TGTCCGGGAATGTAACGGTTAAAGACATGGACCGGTTAGTGGCATATGAGAAAGCAATGA 1193 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 TGTCCGGGAATGTAACGGTTAAAGACATGGACCGGTTAGTGGCATATGAGAAAGCAATGA 712 Query 1194 TGACTTGGGCTAAGTGGATTGATCAAAATATTGATCCTTCCAAAACCAAAGTCTTCTTCC 1253 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 713 TGACTTGGGCTAAGTGGATTGATCAGAACATTGATCCTTCCAAAACCAAAGTCTTCTTCC 772 Query 1254 AAGGTATTTCTCCGGACCATGGCCGGGCAAGGGAATGGTCGAAACAAGGTGGCAAAGGCA 1313 | ||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 773 AGGGTGTTTCTCCGGACCATGGCCGCGCAAGCGAATGGTCGAAACAAGGTGGCAAAGGCA 832 Query 1314 GTTGCATAGGAGAAACAAAGCCGATTATGGGATCGA-GTTACCTGG-CTGGG-CCGCAC- 1369 ||||||| |||||||||||||||||||||||||||| || || ||| | ||| || ||| Sbjct 833 GTTGCATTGGAGAAACAAAGCCGATTATGGGATCGAAGT-AC-TGGGC-GGGACCACACC 889 Query 1370 GCAGCCGAGATGGTGGTGGCGAAAGTGATAAAGACGATGAAGAATCAGGCGCGGTTAATG 1429 | ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 890 G-AGCGGAGATGGTGGTGGCGAAAGTGATAAAGACGATGAAGAATCCGGCGCGGTTAATG 948 Query 1430 GATGTGACATTGATGTCTCAGCTAAGGAAAGATGGACATCCTTCAGTATACGGTTTTGGC 1489 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 949 GATGTGACATTAATGTCTCAGCTAAGGAAAGATGGACATCCTTCAGTATACGGGTTTGGC 1008 Query 1490 GGTCACA-GAATGGCGGATTGTAGCCATTGGTGTCTCTCTGGAGTCCCGGATAGCTGGAA 1548 ||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1009 GGTCACAAGA-TGCCGGATTGTAGCCATTGGTGTCTCTCTGGAGTCCCGGATAGCTGGAA 1067 Query 1549 CCAGCTCTTGTATTCTGAGCTGTTTCATTCTTAA 1582 ||| ||||||||||||||| |||||||||||||| Sbjct 1068 CCAACTCTTGTATTCTGAGTTGTTTCATTCTTAA 1101 > Ahg344851 jgi|Araly1|344851|fgenesh1_pg.C_scaffold_4001193 Length=744 Score = 706 bits (382), Expect = 0.0 Identities = 441/468 (94%), Gaps = 10/468 (2%) Strand=Plus/Plus Query 1120 ATGGGACGCAATTATGTCCGGGAATGTAACGGTTAAAGACATGGACCGGTTAGTGGCATA 1179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 ATGGGACGCAATTATGTCCGGGAATGTAACGGTTAAAGACATGGACCGGTTAGTGGCATA 341 Query 1180 TGAGAAAGCAATGATGACTTGGGCTAAGTGGATTGATCAAAATATTGATCCTTCCAAAAC 1239 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 342 TGAGAAAGCAATGATGACTTGGGCTAAGTGGATTGATCAGAACATTGATCCTTCCAAAAC 401 Query 1240 CAAAGTCTTCTTCCAAGGTATTTCTCCGGACCATGGCCGGGCAAGGGAATGGTCGAAACA 1299 ||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||| Sbjct 402 CAAAGTCTTCTTCCAGGGTGTTTCTCCGGACCATGGCCGCGCAAGCGAATGGTCGAAACA 461 Query 1300 AGGTGGCAAAGGCAGTTGCATAGGAGAAACAAAGCCGATTATGGGATCGA-GTTACCTGG 1358 ||||||||||||||||||||| |||||||||||||||||||||||||||| || || ||| Sbjct 462 AGGTGGCAAAGGCAGTTGCATTGGAGAAACAAAGCCGATTATGGGATCGAAGT-AC-TGG 519 Query 1359 -CTGGG-CCGCAC-GCAGCCGAGATGGTGGTGGCGAAAGTGATAAAGACGATGAAGAATC 1415 | ||| || ||| | ||| |||||||||||||| |||||||||||||| |||||||||| Sbjct 520 GC-GGGACCACACCG-AGCGGAGATGGTGGTGGCAAAAGTGATAAAGACAATGAAGAATC 577 Query 1416 AGGCGCGGTTAATGGATGTGACATTGATGTCTCAGCTAAGGAAAGATGGACATCCTTCAG 1475 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 578 CGGCGCGGTTAATGGATGTGACATTGATGTCTCAGCTAAGGAAAGATGGACATCCTTCGG 637 Query 1476 TATACGGTTTTGGCGGTCACA-GAATGGCGGATTGTAGCCATTGGTGTCTCTCTGGAGTC 1534 ||||||| ||||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 638 TATACGGGTTTGGCGGTCACAAGA-TGCCGGATTGTAGCCATTGGTGTCTCTCTGGAGTC 696 Query 1535 CCGGATAGCTGGAACCAGCTCTTGTATTCTGAGCTGTTTCATTCTTAA 1582 |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 697 CCGGATAGCTGGAACCAGCTCTTGTATTCTGAATTGTTTCATTCTTAA 744 Score = 385 bits (208), Expect = 7e-106 Identities = 264/290 (91%), Gaps = 8/290 (3%) Strand=Plus/Plus Query 479 ATGAGAGGTGCTGCTCCCACCGGAGTAGT-ATCGGTCATGGTTTTAATGATACTTGTGTT 537 ||||||||||||||| | ||||||||||| || |||||||||| |||||||||||||||| Sbjct 1 ATGAGAGGTGCTGCTTCGACCGGAGTAGTAAT-GGTCATGGTTATAATGATACTTGTGTT 59 Query 538 GTTAAAACAAATAGAGAGTGCTAGTGCGAATGGTTCATCATTAGGGCTACCACCTAGAAA 597 |||||| |||| |||||||||||||| |||||||||||| | | | ||| |||||| Sbjct 60 GTTAAACCAAACAGAGAGTGCTAGTGTGAATGGTTCATC---A---CAATCACATAGAAA 113 Query 598 GTTTTGTAATATTTATCAAGGAAGTTGGGTCTATGACAAATCTTACCCTCTCTATGATTC 657 |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 114 GTTTTGTAATATTTATTTAGGAAGTTGGGTCTATGATAAATCTTACCCTCTCTATGATTC 173 Query 658 CAAGAATTGCCCTTTCATCGAGAGACAGTTTAACTGCAAGTCCAATGGTCGCCCTGACAG 717 ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 174 CAAGACTTGTCCTTTCATCGAGAGACAATTTAACTGCAAGTCCAATGGTCGCCCTGACAA 233 Query 718 CGAGTACCTCAAGTATCGATGGCAACCTTCCGGTTGCAATCTCCCCAGAT 767 ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 234 AGAGTACCTCAAGTATCGGTGGCAACCTTCCGGTTGCAATCTCCCCAGAT 283 > Ahg900871 jgi|Araly1|900871|Al_scaffold_0004_1521 Length=774 Score = 385 bits (208), Expect = 7e-106 Identities = 237/251 (94%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 1 CATATACACAGGTTTACACGCTTACGCCAAAAAGACATCAAAAAGTGCTAATCTTTGGAC 60 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 525 CATATACACAGGTTTACACGCTTACGCCAAAAAGACATCAACAAGTGCTAAGCTTTGGAC 584 Query 61 CATACTCTTCACTGCACAACTCTCTTGTATTGCCTTGGTCTATCTTTTTCAAGATAAATG 120 |||||||||||| ||||||||| ||| ||||| |||||||||||||||||||||||| || Sbjct 585 CATACTCTTCACGGCACAACTCGCTTCTATTGTCTTGGTCTATCTTTTTCAAGATAAGTG 644 Query 121 GTCTTATATCCAAAGCCAAGCTACCTTTAACAGAAATCAATCCGTTGATCATAACAGCAA 180 ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 645 GTCTTATATCCAAAGCCAAACTACATTTAACAGAAATCAATCCGTTGATCATAACAGCAA 704 Query 181 CATCTCAACCGCAGAGACTGGCCATGGATACGAGGTCGAAGAGAG-TAAACCGGAGTTAG 239 ||| |||||||||||||||||||||||| |||||||||||||| | |||||| ||||||| Sbjct 705 CATATCAACCGCAGAGACTGGCCATGGAGACGAGGTCGAAGAG-GCTAAACCCGAGTTAG 763 Query 240 AGAAATGCTAA 250 ||||||||||| Sbjct 764 AGAAATGCTAA 774 > Ahg887931 jgi|Araly1|887931|Al_scaffold_0283_1 Length=774 Score = 374 bits (202), Expect = 2e-102 Identities = 235/251 (94%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 1 CATATACACAGGTTTACACGCTTACGCCAAAAAGACATCAAAAAGTGCTAATCTTTGGAC 60 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 525 CATATACACAGGTTTACACGCTTACGCCAAAAAGACATCAACAAGTGCTAAGCTTTGGAC 584 Query 61 CATACTCTTCACTGCACAACTCTCTTGTATTGCCTTGGTCTATCTTTTTCAAGATAAATG 120 |||||||||||| ||||||||| ||| ||||| |||||||||||||||||||||||| || Sbjct 585 CATACTCTTCACGGCACAACTCGCTTCTATTGTCTTGGTCTATCTTTTTCAAGATAAGTG 644 Query 121 GTCTTATATCCAAAGCCAAGCTACCTTTAACAGAAATCAATCCGTTGATCATAACAGCAA 180 ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 645 GTCTTATATCCAAAGCCAAACTACATTTAACAGAAATCAATCCGTTGATCATAACAGCAA 704 Query 181 CATCTCAACCGCAGAGACTGGCCATGGATACGAGGTCGAAGAGAG-TAAACCGGAGTTAG 239 ||| ||||||||||||||||| |||||| ||| |||||||||| | |||||| ||||||| Sbjct 705 CATATCAACCGCAGAGACTGGACATGGAGACGGGGTCGAAGAG-GCTAAACCCGAGTTAG 763 Query 240 AGAAATGCTAA 250 ||||||||||| Sbjct 764 AGAAATGCTAA 774 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64029701845 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5