BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30900.1
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333274 jgi|Araly1|333274|fgenesh1_pm.C_scaffold_283000002 1657 0.0
Ahg344851 jgi|Araly1|344851|fgenesh1_pg.C_scaffold_4001193 706 0.0
Ahg900871 jgi|Araly1|900871|Al_scaffold_0004_1521 385 7e-106
Ahg887931 jgi|Araly1|887931|Al_scaffold_0283_1 374 2e-102
> Ahg333274 jgi|Araly1|333274|fgenesh1_pm.C_scaffold_283000002
Length=1101
Score = 1657 bits (897), Expect = 0.0
Identities = 1045/1114 (94%), Gaps = 20/1114 (2%)
Strand=Plus/Plus
Query 476 ATGATGAGAGGTGCTGCTCCCACCGGAGTAGT-ATCGGTCATGGTTTTAATGATACTTGT 534
|||||||||||||||||| | ||||||||||| || |||||||||| |||||||||||||
Sbjct 1 ATGATGAGAGGTGCTGCTTCGACCGGAGTAGTAAT-GGTCATGGTTATAATGATACTTGT 59
Query 535 GTTGTTAAAACAAATAGAGAGTGCTAGTGCGAATGGTTCATCATTAGGGCTACCACCTAG 594
||||||||| |||| |||||||||||||| |||||||||||| | | | ||| |||
Sbjct 60 GTTGTTAAACCAAACAGAGAGTGCTAGTGTGAATGGTTCATC---A---CAATCACATAG 113
Query 595 AAAGTTTTGTAATATTTATCAAGGAAGTTGGGTCTATGACAAATCTTACCCTCTCTATGA 654
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 114 AAAGTTTTGTAATATTTATTTAGGAAGTTGGGTCTATGATAAATCTTACCCTCTCTATGA 173
Query 655 TTCCAAGAATTGCCCTTTCATCGAGAGACAGTTTAACTGCAAGTCCAATGGTCGCCCTGA 714
|||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 174 TTCCAAGACTTGTCCTTTCATCGAGAGACAATTTAACTGCAAGTCCAATGGTCGCCCTGA 233
Query 715 CAGCGAGTACCTCAAGTATCGATGGCAACCTTCCGGTTGCAATCTCCCCAGATTCAACGG 774
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 234 CAAAGAGTACCTCAAGTATCGGTGGCAACCTTCCGGTTGCAATCTCCCCAGATTCAACGG 293
Query 775 CTTAGATTTTCTGGGAAGGATAATGAAAGGGAAGAAACTGATGTTCGTAGGAGATTCACT 834
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 294 CTTAGATTTTCTTGGAAGGATAATGAAAGGGAAGAAACTGATGTTCGTCGGAGATTCACT 353
Query 835 GAGTCTAAACCAATGGCAATCTCTCACGTGTTTGCTCCACAACGCCGCACCAAAAGCCAA 894
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 354 GAGTCTAAACCAATGGCAATCTCTCACGTGTTTGCTCCACAACGTTGCACCAAACGTCAA 413
Query 895 TTCCA-CATCCACACGTTCCCCTTCTGGCCTCTCCGTCTTCTCATTCCCCGCTTACAATT 953
||||| | | |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 414 TTCCACCCT-CACACGTTCCCCTTCTGGCCTCTCTGTCTTCTCATTCCCCGCTTACAATT 472
Query 954 CTTCGATTATGTTTTCAAGAAACGCGTTTCTTGTGGATATAGTCGGAGCCCCACCGAAGC 1013
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 473 CTTCGATTATGTTTTCAAGAAACGCGTTTCTGGTGGATATAGTCGGAGCCCCACCTAAGC 532
Query 1014 GAGTGATGAAGCTTGACTCAATCTCGAGTGGTTCGTTGTGGAAAACCGCAGACGTTTTGG 1073
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 533 GAGTGATGAAGCTCGACTCCATCTCGAGTGGTTCGTTGTGGAAAACCGCAGATGTTTTGG 592
Query 1074 TCTTCAACTCTTGGCATTGGTGGCTTCACACAGACCGAAAACAACCATGGGACGCAATTA 1133
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 593 TCTTCAACTCTTGGCATTGGTGGCTTCACACCGGCAGAAAACAACCATGGGACGCAATTA 652
Query 1134 TGTCCGGGAATGTAACGGTTAAAGACATGGACCGGTTAGTGGCATATGAGAAAGCAATGA 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TGTCCGGGAATGTAACGGTTAAAGACATGGACCGGTTAGTGGCATATGAGAAAGCAATGA 712
Query 1194 TGACTTGGGCTAAGTGGATTGATCAAAATATTGATCCTTCCAAAACCAAAGTCTTCTTCC 1253
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 713 TGACTTGGGCTAAGTGGATTGATCAGAACATTGATCCTTCCAAAACCAAAGTCTTCTTCC 772
Query 1254 AAGGTATTTCTCCGGACCATGGCCGGGCAAGGGAATGGTCGAAACAAGGTGGCAAAGGCA 1313
| ||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 773 AGGGTGTTTCTCCGGACCATGGCCGCGCAAGCGAATGGTCGAAACAAGGTGGCAAAGGCA 832
Query 1314 GTTGCATAGGAGAAACAAAGCCGATTATGGGATCGA-GTTACCTGG-CTGGG-CCGCAC- 1369
||||||| |||||||||||||||||||||||||||| || || ||| | ||| || |||
Sbjct 833 GTTGCATTGGAGAAACAAAGCCGATTATGGGATCGAAGT-AC-TGGGC-GGGACCACACC 889
Query 1370 GCAGCCGAGATGGTGGTGGCGAAAGTGATAAAGACGATGAAGAATCAGGCGCGGTTAATG 1429
| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 890 G-AGCGGAGATGGTGGTGGCGAAAGTGATAAAGACGATGAAGAATCCGGCGCGGTTAATG 948
Query 1430 GATGTGACATTGATGTCTCAGCTAAGGAAAGATGGACATCCTTCAGTATACGGTTTTGGC 1489
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 949 GATGTGACATTAATGTCTCAGCTAAGGAAAGATGGACATCCTTCAGTATACGGGTTTGGC 1008
Query 1490 GGTCACA-GAATGGCGGATTGTAGCCATTGGTGTCTCTCTGGAGTCCCGGATAGCTGGAA 1548
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GGTCACAAGA-TGCCGGATTGTAGCCATTGGTGTCTCTCTGGAGTCCCGGATAGCTGGAA 1067
Query 1549 CCAGCTCTTGTATTCTGAGCTGTTTCATTCTTAA 1582
||| ||||||||||||||| ||||||||||||||
Sbjct 1068 CCAACTCTTGTATTCTGAGTTGTTTCATTCTTAA 1101
> Ahg344851 jgi|Araly1|344851|fgenesh1_pg.C_scaffold_4001193
Length=744
Score = 706 bits (382), Expect = 0.0
Identities = 441/468 (94%), Gaps = 10/468 (2%)
Strand=Plus/Plus
Query 1120 ATGGGACGCAATTATGTCCGGGAATGTAACGGTTAAAGACATGGACCGGTTAGTGGCATA 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 ATGGGACGCAATTATGTCCGGGAATGTAACGGTTAAAGACATGGACCGGTTAGTGGCATA 341
Query 1180 TGAGAAAGCAATGATGACTTGGGCTAAGTGGATTGATCAAAATATTGATCCTTCCAAAAC 1239
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 342 TGAGAAAGCAATGATGACTTGGGCTAAGTGGATTGATCAGAACATTGATCCTTCCAAAAC 401
Query 1240 CAAAGTCTTCTTCCAAGGTATTTCTCCGGACCATGGCCGGGCAAGGGAATGGTCGAAACA 1299
||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct 402 CAAAGTCTTCTTCCAGGGTGTTTCTCCGGACCATGGCCGCGCAAGCGAATGGTCGAAACA 461
Query 1300 AGGTGGCAAAGGCAGTTGCATAGGAGAAACAAAGCCGATTATGGGATCGA-GTTACCTGG 1358
||||||||||||||||||||| |||||||||||||||||||||||||||| || || |||
Sbjct 462 AGGTGGCAAAGGCAGTTGCATTGGAGAAACAAAGCCGATTATGGGATCGAAGT-AC-TGG 519
Query 1359 -CTGGG-CCGCAC-GCAGCCGAGATGGTGGTGGCGAAAGTGATAAAGACGATGAAGAATC 1415
| ||| || ||| | ||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 520 GC-GGGACCACACCG-AGCGGAGATGGTGGTGGCAAAAGTGATAAAGACAATGAAGAATC 577
Query 1416 AGGCGCGGTTAATGGATGTGACATTGATGTCTCAGCTAAGGAAAGATGGACATCCTTCAG 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 578 CGGCGCGGTTAATGGATGTGACATTGATGTCTCAGCTAAGGAAAGATGGACATCCTTCGG 637
Query 1476 TATACGGTTTTGGCGGTCACA-GAATGGCGGATTGTAGCCATTGGTGTCTCTCTGGAGTC 1534
||||||| ||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 638 TATACGGGTTTGGCGGTCACAAGA-TGCCGGATTGTAGCCATTGGTGTCTCTCTGGAGTC 696
Query 1535 CCGGATAGCTGGAACCAGCTCTTGTATTCTGAGCTGTTTCATTCTTAA 1582
|||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 697 CCGGATAGCTGGAACCAGCTCTTGTATTCTGAATTGTTTCATTCTTAA 744
Score = 385 bits (208), Expect = 7e-106
Identities = 264/290 (91%), Gaps = 8/290 (3%)
Strand=Plus/Plus
Query 479 ATGAGAGGTGCTGCTCCCACCGGAGTAGT-ATCGGTCATGGTTTTAATGATACTTGTGTT 537
||||||||||||||| | ||||||||||| || |||||||||| ||||||||||||||||
Sbjct 1 ATGAGAGGTGCTGCTTCGACCGGAGTAGTAAT-GGTCATGGTTATAATGATACTTGTGTT 59
Query 538 GTTAAAACAAATAGAGAGTGCTAGTGCGAATGGTTCATCATTAGGGCTACCACCTAGAAA 597
|||||| |||| |||||||||||||| |||||||||||| | | | ||| ||||||
Sbjct 60 GTTAAACCAAACAGAGAGTGCTAGTGTGAATGGTTCATC---A---CAATCACATAGAAA 113
Query 598 GTTTTGTAATATTTATCAAGGAAGTTGGGTCTATGACAAATCTTACCCTCTCTATGATTC 657
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 114 GTTTTGTAATATTTATTTAGGAAGTTGGGTCTATGATAAATCTTACCCTCTCTATGATTC 173
Query 658 CAAGAATTGCCCTTTCATCGAGAGACAGTTTAACTGCAAGTCCAATGGTCGCCCTGACAG 717
||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 174 CAAGACTTGTCCTTTCATCGAGAGACAATTTAACTGCAAGTCCAATGGTCGCCCTGACAA 233
Query 718 CGAGTACCTCAAGTATCGATGGCAACCTTCCGGTTGCAATCTCCCCAGAT 767
||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 234 AGAGTACCTCAAGTATCGGTGGCAACCTTCCGGTTGCAATCTCCCCAGAT 283
> Ahg900871 jgi|Araly1|900871|Al_scaffold_0004_1521
Length=774
Score = 385 bits (208), Expect = 7e-106
Identities = 237/251 (94%), Gaps = 2/251 (1%)
Strand=Plus/Plus
Query 1 CATATACACAGGTTTACACGCTTACGCCAAAAAGACATCAAAAAGTGCTAATCTTTGGAC 60
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 525 CATATACACAGGTTTACACGCTTACGCCAAAAAGACATCAACAAGTGCTAAGCTTTGGAC 584
Query 61 CATACTCTTCACTGCACAACTCTCTTGTATTGCCTTGGTCTATCTTTTTCAAGATAAATG 120
|||||||||||| ||||||||| ||| ||||| |||||||||||||||||||||||| ||
Sbjct 585 CATACTCTTCACGGCACAACTCGCTTCTATTGTCTTGGTCTATCTTTTTCAAGATAAGTG 644
Query 121 GTCTTATATCCAAAGCCAAGCTACCTTTAACAGAAATCAATCCGTTGATCATAACAGCAA 180
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 645 GTCTTATATCCAAAGCCAAACTACATTTAACAGAAATCAATCCGTTGATCATAACAGCAA 704
Query 181 CATCTCAACCGCAGAGACTGGCCATGGATACGAGGTCGAAGAGAG-TAAACCGGAGTTAG 239
||| |||||||||||||||||||||||| |||||||||||||| | |||||| |||||||
Sbjct 705 CATATCAACCGCAGAGACTGGCCATGGAGACGAGGTCGAAGAG-GCTAAACCCGAGTTAG 763
Query 240 AGAAATGCTAA 250
|||||||||||
Sbjct 764 AGAAATGCTAA 774
> Ahg887931 jgi|Araly1|887931|Al_scaffold_0283_1
Length=774
Score = 374 bits (202), Expect = 2e-102
Identities = 235/251 (94%), Gaps = 2/251 (1%)
Strand=Plus/Plus
Query 1 CATATACACAGGTTTACACGCTTACGCCAAAAAGACATCAAAAAGTGCTAATCTTTGGAC 60
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 525 CATATACACAGGTTTACACGCTTACGCCAAAAAGACATCAACAAGTGCTAAGCTTTGGAC 584
Query 61 CATACTCTTCACTGCACAACTCTCTTGTATTGCCTTGGTCTATCTTTTTCAAGATAAATG 120
|||||||||||| ||||||||| ||| ||||| |||||||||||||||||||||||| ||
Sbjct 585 CATACTCTTCACGGCACAACTCGCTTCTATTGTCTTGGTCTATCTTTTTCAAGATAAGTG 644
Query 121 GTCTTATATCCAAAGCCAAGCTACCTTTAACAGAAATCAATCCGTTGATCATAACAGCAA 180
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 645 GTCTTATATCCAAAGCCAAACTACATTTAACAGAAATCAATCCGTTGATCATAACAGCAA 704
Query 181 CATCTCAACCGCAGAGACTGGCCATGGATACGAGGTCGAAGAGAG-TAAACCGGAGTTAG 239
||| ||||||||||||||||| |||||| ||| |||||||||| | |||||| |||||||
Sbjct 705 CATATCAACCGCAGAGACTGGACATGGAGACGGGGTCGAAGAG-GCTAAACCCGAGTTAG 763
Query 240 AGAAATGCTAA 250
|||||||||||
Sbjct 764 AGAAATGCTAA 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64029701845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5