BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30910.1
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497382 jgi|Araly1|497382|fgenesh2_kg.283__3__AT2G30910.1 2206 0.0
Ahg482009 jgi|Araly1|482009|fgenesh2_kg.4__1069__AT2G30910.1 2200 0.0
> Ahg497382 jgi|Araly1|497382|fgenesh2_kg.283__3__AT2G30910.1
Length=1574
Score = 2206 bits (1194), Expect = 0.0
Identities = 1463/1585 (92%), Gaps = 50/1585 (3%)
Strand=Plus/Plus
Query 2 TGGTCATAAAAATTGGGGCTTT--AGTaaaaaa-aaa-aaa-aaa-aaa-aaa-aaCATC 53
|||||||||||||| ||||||| ||||||||| ||| ||| ||| ||| ||| || | |
Sbjct 1 TGGTCATAAAAATT-GGGCTTTAGAGTAAAAAACAAACAAACAAACAAACAAACAAAAAC 59
Query 54 TGTCTCTTTCACTTCACGTTTGCGACTGTGTCGTCGTCCACCTCCGGATCTCATCGGCGT 113
||||| || ||||| || | || ||||||| | |||||||||||||||||||
Sbjct 60 -ATCTCTCTC-TTTCAC--TT-C-AC---GTCGTCG---AGCTCCGGATCTCATCGGCGT 107
Query 114 TTCATCATAATTATCTGTCCATCTATTCACCGTACGACTCCGTT-TTAGGAATCTGTGGA 172
|||||| ||| || ||| |||||||||||||||||||||||| |||||||||||| ||
Sbjct 108 TTCATC---ATTCTCCGTCGATCTATTCACCGTACGACTCCGTTATTAGGAATCTGTAGA 164
Query 173 TGTCAATTTGAGAGAAAAGACTGTCTTCATTACAACACATTTGGGACAACAAGGATCACT 232
|||||||||||||||||||||| || | | | | || || ||||| | || |
Sbjct 165 TGTCAATTTGAGAGAAAAGACTATC-T--GT-C-TC-CA-TT---ACAAC----A-CA-T 208
Query 233 CATGGCAGTGGTGGATGTTCATCGTTTCGCTGAGTCAATCACTTGCCATGCTTGGAGTCC 292
||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 209 TATGGCGGTGGTGGATGTTCATCGGTTCGCTGAGTCAATCACTTGCCATGCGTGGAGTCC 268
Query 293 TGATCTCTCCATGGTTGCTCTCTGTCCTAACAACACTGAAGTTCATATCTATAAATCATT 352
||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 269 TGATCACTCCATGGTTGCTCTCTGTCCTAACAATACTCAAGTTCATATCTATAAATCATC 328
Query 353 GTCTCAAGACCACTGGGAGAGGTTACATGTCCTCCAAAAGCATGACCAAATTGTTTCTGG 412
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 ATCTCTAGACCAGTGGGAGAGGTTACATGTCCTCCAAAAGCATGACCAAATTGTTTCTGG 388
Query 413 AATAGATTGGAGCTCAAAGTCCAACAAAATCGTCACTGTTTCTCATGACAGGAACTCGTA 472
||| || ||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 389 AATTGACTGGAGCTCAAAATCCAACAAAATCGTCAGTGTTTCTCATGACAGGAACTCGTA 448
Query 473 CGTCTGGAGCCTGGAAGGAGCTGAATGGGTACCAACTCTCGTTATTCTTAGACTAAATCG 532
||| ||||||||||| |||| ||| |||||||||||||| ||||||||||||||||||||
Sbjct 449 CGTGTGGAGCCTGGACGGAGGTGAGTGGGTACCAACTCTTGTTATTCTTAGACTAAATCG 508
Query 533 TGCTGCACTTTGTGTCCAATGGAGCCCCAAAGAGAACAAGTTTGCTGTTGGAAGTGGTGC 592
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 509 TGCTGCACTTTGTGTCCAATGGAGCCCGAAAGAGAACAAGTTCGCTGTTGGAAGTGGTGC 568
Query 593 TAAAACTGTTTGTATTTGCTATTATGAGCAAGAGAATAACTGGTGGGTCAGTAAGCTAAT 652
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 569 TAAAACTGTTTGTATTTGCTATTACGAGCAAGAGAATAACTGGTGGGTCAGTAAACTTAT 628
Query 653 CCGGAAAAGGCACGAATCTTCAGTCACATCTGTTGCTTGGCATCCTAATAATGTTCTTCT 712
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 629 CCGGAAAAGGCACGAATCTTCAGTCACATCTGTTGCTTGGCATCCTAATAATATTCTTCT 688
Query 713 GGCAACGACATCAACAGATGGAAAATGTCGGGTATTTTCAACATTTATCAAAGGAGTTGA 772
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 689 GGCAACGACATCTACAGATGGAAAATGTCGGGTATTTTCAACATTCATCAAAGGAGTTGA 748
Query 773 CACAAAGGATTCAAAAGCAGGCTCACCAGCGGAAACGAAATTTGGGGAGCAAATTCTTCA 832
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 749 TACAAAGGATTCAAAAGCAGGCTCACCAGCGGAAACTAAATTTGGGGAGCAAATTCTTCA 808
Query 833 GCTTGATCTCTCATATTCTTGGGCATTTGGTGTTAAATGGTCTCCAAGTGGAAACACCTT 892
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 809 GCTTGATCTCTCATATTCTTGGGCATTTGGTGTGAAATGGTCTCCAAGTGGAAACACCTT 868
Query 893 AGCTTATGTAGGTCATAGCTCCATGATTTACTTTGTTGATGATGTTGGTCCTTCTCCTTT 952
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 AGCTTATGTAGGCCATAGCTCCATGATTTACTTTGTTGATGATGTTGGTCCTTCTCCTTT 928
Query 953 AGCCCAAAGCGTTGCATTTCGAGATTTGCCTCTTCGTGATGTCCTGTTTATTTCTGAGAA 1012
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 929 AGCCCAAAGCGTTGCATTCCGAGATTTGCCTCTTCGTGATGTCCTGTTTATTTCTGAGAA 988
Query 1013 AATGGTGATAGGCGTGGGATATGACAGCAACCCGATGGTATTTGCCT-CAGATGATACTG 1071
|||||||||||| || |||||||||||||| || |||||||||| || ||||||||||||
Sbjct 989 AATGGTGATAGGTGTTGGATATGACAGCAATCCAATGGTATTTG-CTGCAGATGATACTG 1047
Query 1072 GAATATGGAGCTTTATCAGATACATCGGAGAGAAGAAAGCAGCATCTTCAAATTCCAGTT 1131
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1048 GAATATGGAGCTTTATCAGATACATCGGAGAGAAGAAAGCGGCATCTTCAAATTCCAGTT 1107
Query 1132 ACAGTTCGCAGTTTTCTGAAGCATTTGGAAAATTCTACGGCAGTCAATCAAAGTCCACAA 1191
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1108 ACAGTTCGCAGTTTTCCGAAGCATTTGGAAAATTCTACGGTAGTCAATCAAAGTCTGCAA 1167
Query 1192 CAGCCAACGATGCTTCTGAATCACGTGGAGGTGTTCATGATAACTGCATAAATTCCATTG 1251
||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 1168 CAGCCAATGATGCTTCTGAATCACGTGGACGCGTTCATGATAACTGCATAAATTCTATTG 1227
Query 1252 TGTCTCTGAGCAAAGCAGGGAGTCCTAAAGTAATGCGATTCAGCACTTCAGGATTGGATG 1311
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1228 TGCCTCTGAGCAAAGCAGGGAGTCCTAAAGTTATGCGATTCAGCACTTCAGGATTGGATG 1287
Query 1312 GCAAAGTTGCCATATGGGATCTGGAGAACATGGAACAAGAACTTGGCAATCAGTTTTAAT 1371
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 GCAAAGTAGCCATATGGGATCTGGAGAACATGGAACAAGAACTTGGCAATCAGTTTTAAT 1347
Query 1372 AAACACACAAATAAAACAATTCTGGCTCACAAGCAAGGTTTTACTTAAGTTTA-AACTAC 1430
||||||||||||||||||| ||||| |||||||||| |||||||||| |||| |||| |
Sbjct 1348 AAACACACAAATAAAACAAATCTGGATCACAAGCAACGTTTTACTTAT-TTTATAACT-C 1405
Query 1431 TTTTTC-AATTTCGTAATTGTTTCACTTTGTAAACTGCCACAATAAAAGGCCTTATTTTC 1489
|||||| ||||||||| ||||||||||||||||||| | | |||||||||||||||||||
Sbjct 1406 TTTTTCCAATTTCGTATTTGTTTCACTTTGTAAACTACAATAATAAAAGGCCTTATTTTC 1465
Query 1490 TTGGTTTGTGTAAGGGCAGGTATTA--A-TAAGTTTCTTGGCTTCATGATTTGATTCATT 1546
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1466 TTGGTTTGTGTAAGGGCAGGTATTATTAATAAGTTTCTTGGCTTCATGATTTGATTCATT 1525
Query 1547 TAGTTAGCATCTTGTAATACCTTTT 1571
|||||||||||| ||||||| ||||
Sbjct 1526 TAGTTAGCATCTGGTAATACATTTT 1550
> Ahg482009 jgi|Araly1|482009|fgenesh2_kg.4__1069__AT2G30910.1
Length=1516
Score = 2200 bits (1191), Expect = 0.0
Identities = 1398/1494 (94%), Gaps = 29/1494 (2%)
Strand=Plus/Plus
Query 85 CGTCGTCCACCTCCGGATCTCATCGGCGTTTCATCATAATTATCTGTCCATCTATTCACC 144
||||||| | ||||||||||||||||||||||||| ||| || ||| |||||||||||
Sbjct 21 CGTCGTCGAGCTCCGGATCTCATCGGCGTTTCATC---ATTCTCCGTCGATCTATTCACC 77
Query 145 GTACGACTCCGTT-TTAGGAATCTGTGGATGTCAATTTGAGAGAAAAGACTGTCTTCATT 203
||||||||||||| |||||||||||| |||||||||||||||||||||||| || | |
Sbjct 78 GTACGACTCCGTTATTAGGAATCTGTAGATGTCAATTTGAGAGAAAAGACTATC-T--GT 134
Query 204 ACAACACATTTGGGACAACAAGGATCACTCATGGCAGTGGTGGATGTTCATCGTTTCGCT 263
| | || || ||||| | || | ||||| ||||||||||||||||| ||||||
Sbjct 135 -C-TC-CA-TT---ACAAC----A-CA-TTATGGCGGTGGTGGATGTTCATCGGTTCGCT 181
Query 264 GAGTCAATCACTTGCCATGCTTGGAGTCCTGATCTCTCCATGGTTGCTCTCTGTCCTAAC 323
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 182 GAGTCAATCACTTGCCATGCGTGGAGTCCTGATCACTCCATGGTTGCTCTCTGTCCTAAC 241
Query 324 AACACTGAAGTTCATATCTATAAATCATTGTCTCAAGACCACTGGGAGAGGTTACATGTC 383
|| ||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 242 AATACTCAAGTTCATATCTATAAATCATCATCTCAAGACCAGTGGGAGAGGTTACATGTC 301
Query 384 CTCCAAAAGCATGACCAAATTGTTTCTGGAATAGATTGGAGCTCAAAGTCCAACAAAATC 443
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 302 CTCCAAAAGCATGACCAAATTGTTTCTGGAATTGACTGGAGCTCAAAATCCAACAAAATC 361
Query 444 GTCACTGTTTCTCATGACAGGAACTCGTACGTCTGGAGCCTGGAAGGAGCTGAATGGGTA 503
|||| ||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||
Sbjct 362 GTCAGTGTTTCTCATGACAGGAACTCGTACGTGTGGAGCCTGGACGGAGGTGAGTGGGTA 421
Query 504 CCAACTCTCGTTATTCTTAGACTAAATCGTGCTGCACTTTGTGTCCAATGGAGCCCCAAA 563
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 422 CCAACTCTTGTTATTCTTAGACTAAATCGTGCTGCACTTTGTGTCCAATGGAGCCCGAAA 481
Query 564 GAGAACAAGTTTGCTGTTGGAAGTGGTGCTAAAACTGTTTGTATTTGCTATTATGAGCAA 623
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 482 GAGAACAAGTTCGCTGTTGGAAGTGGTGCTAAAACTGTTTGTATTTGCTATTACGAGCAA 541
Query 624 GAGAATAACTGGTGGGTCAGTAAGCTAATCCGGAAAAGGCACGAATCTTCAGTCACATCT 683
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 542 GAGAATAACTGGTGGGTCAGTAAACTTATCCGGAAAAGGCACGAATCTTCAGTCACATCT 601
Query 684 GTTGCTTGGCATCCTAATAATGTTCTTCTGGCAACGACATCAACAGATGGAAAATGTCGG 743
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 602 GTTGCTTGGCATCCTAATAATATTCTTCTGGCAACGACATCTACAGATGGAAAATGTCGG 661
Query 744 GTATTTTCAACATTTATCAAAGGAGTTGACACAAAGGATTCAAAAGCAGGCTCACCAGCG 803
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 662 GTATTTTCAACATTCATCAAAGGAGTTGATACAAAGGATTCAAAAGCAGGCTCACCAGCG 721
Query 804 GAAACGAAATTTGGGGAGCAAATTCTTCAGCTTGATCTCTCATATTCTTGGGCATTTGGT 863
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GAAACTAAATTTGGGGAGCAAATTCTTCAGCTTGATCTCTCATATTCTTGGGCATTTGGT 781
Query 864 GTTAAATGGTCTCCAAGTGGAAACACCTTAGCTTATGTAGGTCATAGCTCCATGATTTAC 923
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 782 GTGAAATGGTCTCCAAGTGGAAACACCTTAGCTTATGTAGGCCATAGCTCCATGATTTAC 841
Query 924 TTTGTTGATGATGTTGGTCCTTCTCCTTTAGCCCAAAGCGTTGCATTTCGAGATTTGCCT 983
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 842 TTTGTTGATGATGTTGGTCCTTCTCCTTTAGCCCAAAGCGTTGCATTCCGAGATTTGCCT 901
Query 984 CTTCGTGATGTCCTGTTTATTTCTGAGAAAATGGTGATAGGCGTGGGATATGACAGCAAC 1043
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 902 CTTCGTGATGTCCTGTTTATTTCTGAGAAAATGGTGATAGGTGTTGGATATGACAGCAAT 961
Query 1044 CCGATGGTATTTGCCT-CAGATGATACTGGAATATGGAGCTTTATCAGATACATCGGAGA 1102
|| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 CCAATGGTATTTG-CTGCAGATGATACTGGAATATGGAGCTTTATCAGATACATCGGAGA 1020
Query 1103 GAAGAAAGCAGCATCTTCAAATTCCAGTTACAGTTCGCAGTTTTCTGAAGCATTTGGAAA 1162
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1021 GAAGAAAGCGGCATCTTCAAATTCCAGTTACAGTTCGCAGTTTTCCGAAGCATTTGGAAA 1080
Query 1163 ATTCTACGGCAGTCAATCAAAGTCCACAACAGCCAACGATGCTTCTGAATCACGTGGAGG 1222
||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| |
Sbjct 1081 ATTCTACGGTAGTCAATCAAAGTCTGCAACAGCCAATGATGCTTCTGAATCACGTGGACG 1140
Query 1223 TGTTCATGATAACTGCATAAATTCCATTGTGTCTCTGAGCAAAGCAGGGAGTCCTAAAGT 1282
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1141 CGTTCATGATAACTGCATAAATTCTATTGTGCCTCTGAGCAAAGCAGGGAGTCCTAAAGT 1200
Query 1283 AATGCGATTCAGCACTTCAGGATTGGATGGCAAAGTTGCCATATGGGATCTGGAGAACAT 1342
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1201 TATGCGATTCAGCACTTCAGGATTGGATGGCAAAGTAGCCATATGGGATCTGGAGAACAT 1260
Query 1343 GGAACAAGAACTTGGCAATCAGTTTTAATAAACACACAAATAAAACAATTCTGGCTCACA 1402
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1261 GGAACAAGAACTTGGCAATCAGTTTTAATAAACACACAAATAAAACAAATCTGGATCACA 1320
Query 1403 AGCAAGGTTTTACTTAAGTTTA-AACTACTTTTTC-AATTTCGTAATTGTTTCACTTTGT 1460
||||| |||||||||| |||| |||| ||||||| ||||||||| ||||||||||||||
Sbjct 1321 AGCAACGTTTTACTTAT-TTTATAACT-CTTTTTCCAATTTCGTATTTGTTTCACTTTGT 1378
Query 1461 AAACTGCCACAATAAAAGGCCTTATTTTCTTGGTTTGTGTAAGGGCAGGTATTA--A-TA 1517
||||| | | |||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1379 AAACTACAATAATAAAAGGCCTTATTTTCTTGGTTTGTGTAAGGGCAGGTATTATTAATA 1438
Query 1518 AGTTTCTTGGCTTCATGATTTGATTCATTTAGTTAGCATCTTGTAATACCTTTT 1571
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1439 AGTTTCTTGGCTTCATGATTTGATTCATTTAGTTAGCATCTGGTAATACATTTT 1492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5