BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30920.1
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482011 jgi|Araly1|482011|fgenesh2_kg.4__1071__AT2G30920.1 1829 0.0
Ahg359489 jgi|Araly1|359489|fgenesh1_pg.C_scaffold_283000004 658 0.0
> Ahg482011 jgi|Araly1|482011|fgenesh2_kg.4__1071__AT2G30920.1
Length=1142
Score = 1829 bits (990), Expect = 0.0
Identities = 1095/1145 (96%), Gaps = 9/1145 (1%)
Strand=Plus/Plus
Query 49 CCGACGTCAGTAACTTCCGACCGCAGTTTCCGAAACTCGTGATCGCTTTCTCTTTCGAAA 108
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 CCGACGTCAGTAATTTCCGACCGCCGTTTCCGAAACTCGTGATCGCTTTCTCTTTCGAAA 60
Query 109 ATGTTGGCGTCG--GTACGGGTGAATCAGCTGCAAAGACTTCTTCTCTCTGCTCGTCGAT 166
|||||||||||| || | | ||||||| || ||||| |||||||||||||||||||| |
Sbjct 61 ATGTTGGCGTCGAAGT-C-GATGAATCAACTACAAAGGCTTCTTCTCTCTGCTCGTCGCT 118
Query 167 TATCTTCTTCACC-AATAATACCTCCGTCGCGTTTACTTCACCAGCGGCTATTCTCGACT 225
|||||||||| || ||| |||||||||||| |||||||||||||||| || |||||||||
Sbjct 119 TATCTTCTTC-CCAAATCATACCTCCGTCGTGTTTACTTCACCAGCGCCTGTTCTCGACT 177
Query 226 TCAGACACTGATGCTTCGGCTGCATCTTTTTCTTCTTCGCATCCGAAAATACAAACGCTT 285
||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 178 TCAGATACTGATTCTTCGGCTGCATCTTTTTCCTCTTCGCATCCGAAAATGCAAACGCTT 237
Query 286 GAAGGCAAAGCTTCTAATAAAAGCCGAAGCACATCGT---CAACAACATCTTTGAATGAA 342
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 238 GAAGGCAAAGCTTCTAATAAAAGCCGAAGCACATCGTCAACAACAACATCTTTGAATGAA 297
Query 343 GATGAACTTGCCAAATTCTCTGCCATTGCTGATACCTGGTGGCATTCTGAAGGACCCTTT 402
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 298 GATGAACTTGCCAAATTCTCTGCCATTGCTGATACCTGGTGGCATTCTGAAGGGCCCTTT 357
Query 403 AAACCGTTGCATCAAATGAATCCAACTCGGTTGGCTTTCATCCGCTCGACCTTATGCAGG 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AAACCGTTGCATCAAATGAATCCAACTCGGTTGGCTTTCATCCGCTCGACCTTATGCAGG 417
Query 463 CACTTCAGTAAGGATCCGAGTTCTGCTAAGCCTTTTGAAGGACTGAAATTTATCGATATA 522
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 418 CATTTCAGTAAGGATCCGAGTTCTGCTAAGCCTTTTGAAGGACTGAGATTTATCGATATA 477
Query 523 GGTTGCGGTGGCGGACTACTTTCTGAGCCTCTAGCACGGATGGGAGCAACTGTCACAGGA 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGTTGCGGTGGCGGACTACTTTCTGAGCCTCTAGCACGGATGGGAGCAACTGTCACAGGA 537
Query 583 GTTGATGCTGTTGATAAGAATGTCAAAATTGCTCGTCTTCACGCTGATATGGATCCAGTG 642
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GTTGATGCTGTTGATAAGAATGTCAAAATTGCTCGTCTTCACGCTGATATGGATCCAGTT 597
Query 643 ACTTCAACGATTGAATACTTATGTACTACAGCAGAAAAGCTAGCGGATGAAGGCAGGAAG 702
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 598 ACTTCAACGATTGAATACCTATGTACTACAGCAGAAATGCTAGCGGATGAAGGCAGGAAG 657
Query 703 TTTGATGCTGTTCTTTCTTTAGAGGTCATCGAGCATGTAGCAAACCCTGCAGAGTTCTGT 762
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 658 TTTGATGCTGTTCTCTCTTTAGAGGTCATCGAGCATGTAGCCAACCCTGCAGAGTTCTGC 717
Query 763 AAGTCGTTGTCAGCATTGACTATCCCCAACGGGGCTACAGTACTTTCTACAATCAATCGC 822
|||||||||||||||||||| |||||||| ||||||||| ||||||||||| | ||||||
Sbjct 718 AAGTCGTTGTCAGCATTGACCATCCCCAATGGGGCTACAATACTTTCTACAGTTAATCGC 777
Query 823 ACTATGCGAGCATATGCATCAACCATTGTTGGAGCAGAGTACATTCTACGTTGGCTTCCT 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ACTATGCGAGCATATGCATCAACCATTGTTGGAGCAGAGTACATTCTACGTTGGCTTCCT 837
Query 883 AAAGGCACACACCAGTGGTCAAGTTTTGTAACTCCTGAAGAAATGAGTATGATATTACAA 942
||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 838 AAAGGCACACATCAGTGGTCAAGTTTTGTAACTCCCGAAGAACTGAGTATGATATTACAA 897
Query 943 CGTGCTTCAGTCGATGTGAAAGAGATAGCTGGATTTGTGTACAACCCAATAACAGGAAGA 1002
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 898 CATGCTTCAGTCGATGTGAAAGAGATGGCTGGATTTGTGTACAACCCAATAACAGGAAGA 957
Query 1003 TGGTTATTGTCAGATGATATTAGTGTCAACTATATTGCTTATGGGACGAAAAGGAAGGAT 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGGTTATTGTCAGATGATATTAGTGTCAACTATATTGCTTATGGGACGAAAAGGAAGGAT 1017
Query 1063 CTTGGAGACATATAATCAATCGTTCCAAGTCGTGTTTCTCTGCATATCTGCTTCTGAGTT 1122
|||||||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||
Sbjct 1018 CTTGGAGACATATAATCAATCGTTCCAAATCGTCTTTTTCTGCCTATCTGCTTCTGAGTT 1077
Query 1123 ACAACTCTAGTTCATGCTTTAAAAACTAGGTACTCTGGAAGTTGCTTAGGACGAGGACAG 1182
|||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1078 ACAACTCTAGTTTATGCTTTAAAAAGTAGGTACTCTGGAAGTTGGTTAGGACGAGGACAG 1137
Query 1183 TAGTT 1187
|||||
Sbjct 1138 TAGTT 1142
> Ahg359489 jgi|Araly1|359489|fgenesh1_pg.C_scaffold_283000004
Length=401
Score = 658 bits (356), Expect = 0.0
Identities = 386/401 (96%), Gaps = 0/401 (0%)
Strand=Plus/Plus
Query 677 AAAAGCTAGCGGATGAAGGCAGGAAGTTTGATGCTGTTCTTTCTTTAGAGGTCATCGAGC 736
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 AAATGCTAGCGGATGAAGGCAGGAAGTTTGATGCTGTTCTCTCTTTAGAGGTCATCGAGC 60
Query 737 ATGTAGCAAACCCTGCAGAGTTCTGTAAGTCGTTGTCAGCATTGACTATCCCCAACGGGG 796
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 61 ATGTAGCCAACCCTGCAGAGTTCTGCAAGTCGTTGTCAGCATTGACCATCCCCAATGGGG 120
Query 797 CTACAGTACTTTCTACAATCAATCGCACTATGCGAGCATATGCATCAACCATTGTTGGAG 856
||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTACAATACTTTCTACAGTTAATCGCACTATGCGAGCATATGCATCAACCATTGTTGGAG 180
Query 857 CAGAGTACATTCTACGTTGGCTTCCTAAAGGCACACACCAGTGGTCAAGTTTTGTAACTC 916
|||||||||| |||||||||||||||| ||||||||| || |||||||||||||||||||
Sbjct 181 CAGAGTACATCCTACGTTGGCTTCCTATAGGCACACATCAATGGTCAAGTTTTGTAACTC 240
Query 917 CTGAAGAAATGAGTATGATATTACAACGTGCTTCAGTCGATGTGAAAGAGATAGCTGGAT 976
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 CTGAAGAACTGAGTATGATATTACAACGTGCTTCAGTCGATGTGAAAGAGATGGCTGGAT 300
Query 977 TTGTGTACAACCCAATAACAGGAAGATGGTTATTGTCAGATGATATTAGTGTCAACTATA 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGTGTACAACCCAATAACAGGAAGATGGTTATTGTCAGATGATATTAGTGTCAACTATA 360
Query 1037 TTGCTTATGGGACGAAAAGGAAGGATCTTGGAGACATATAA 1077
|||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGCTTATGGGACGAAAAGGAAGGATCTTGGAGACATATAA 401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50627233776
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5