BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G30930.1

Length=826
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg320838 jgi|Araly1|320838|fgenesh1_pm.C_scaffold_4000895           514    4e-145


> Ahg320838 jgi|Araly1|320838|fgenesh1_pm.C_scaffold_4000895
Length=465

 Score =  514 bits (278),  Expect = 4e-145
 Identities = 347/381 (91%), Gaps = 2/381 (1%)
 Strand=Plus/Plus

Query  205  AAACCGCCAGGAGCACTCTAACTGACGC-CGAGACAACCGTTGCAGCATCTGTTGAAACG  263
            |||||||||||| | |||| |||||||| | ||| |||||||| ||| ||   |||||||
Sbjct  86   AAACCGCCAGGACCGCTCTTACTGACGCTC-AGAAAACCGTTGAAGCCTCCACTGAAACG  144

Query  264  GTCAAGACCGAGGCTGCAGCCGCACCAGACAAAGCGTCTGGTGTGTCTACACAGGCTAAG  323
            |||||||||||||||| |||||| ||| | ||||| |||| | ||||||||||||| |||
Sbjct  145  GTCAAGACCGAGGCTGAAGCCGCGCCAAAGAAAGCTTCTGATCTGTCTACACAGGCAAAG  204

Query  324  GATGCAGTGGACAAAGCTTTTTCTAGAGGTATAGAAGGAGCCAAATCTTTGCTTCAAACT  383
            |||||| ||||||||| | | || ||||||||||||||||||||||||||||||||||||
Sbjct  205  GATGCAATGGACAAAGGTATATCAAGAGGTATAGAAGGAGCCAAATCTTTGCTTCAAACT  264

Query  384  TTCGAAGCGAAGAGCAGCGATATTTCCTCAAAGCTTGTTGGAGGTGTTACCAATCTTGTG  443
            |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  265  TTCGAAGCGAAGAGTAGCGATATTTCCTCAAAGCTCGTTGGAGGTGTTACCAATCTTGTG  324

Query  444  AGTGGAGCATCGAGCAGCACCGTGGCAAACCGAGACCTTCCAGTATCTACAGACAACCAG  503
            |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct  325  AGTGGAGCATCGAGCAGCACCGTGGCAAGCCGAGACCTTCCCGTATCTACAGACAATCAG  384

Query  504  CCTCTGCTAGCGTCTGGTGAAAAGACGCCGTGGTGGAAGAATTGTTGTGGAGTTCTTGAT  563
            ||||||||||||||| | || | ||| |||||||||||||||||||||||||||||||||
Sbjct  385  CCTCTGCTAGCGTCTCGCGAGACGACACCGTGGTGGAAGAATTGTTGTGGAGTTCTTGAT  444

Query  564  CTTTTCAAGAAAGATACTTAA  584
            |||||||||||||||||||||
Sbjct  445  CTTTTCAAGAAAGATACTTAA  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30536456517


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5