BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30933.1
Length=1013
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900876 jgi|Araly1|900876|Al_scaffold_0004_1526 1014 0.0
> Ahg900876 jgi|Araly1|900876|Al_scaffold_0004_1526
Length=699
Score = 1014 bits (549), Expect = 0.0
Identities = 611/640 (95%), Gaps = 7/640 (1%)
Strand=Plus/Plus
Query 212 GGATAAAGGCTTCAGATTAGTAACCAGtcttcttcttctctccttcttctt---ctCAGG 268
||| |||||||||||| |||||||||||||||||||||||| |||| |||| ||||||
Sbjct 4 GGA-AAAGGCTTCAGACTAGTAACCAGTCTTCTTCTTCTCTTCTTCCTCTTCAGCTCAGG 62
Query 269 TACAAAAGCAATTACTGAACCAATAGAAGAAGAAAAAGACATAACCACACCATTAGCCAC 328
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TACAAAAGCTAGTACTGAACCAATAGAAGAAGAAAAAGACATAACCACACCATTAGCCAC 122
Query 329 AAACCCAACCACCACACCAACAACCGTGGTCCCTAACTCCGACTCTGACGCTTCCGCGGT 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 AAACCCAACCACCACACCAACAACCGTGGTCCCTAACTCCGACTCTGACGCTTCCGCGGT 182
Query 389 GGCCACAACGCCACTAACGATTCCATCGTCACCACACGGTGTAGCCTACCCAGGTGATCA 448
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 183 GGCCACAACGCCACTAACGATTCCATCGCCACCACACGGTGTAGCCTATCCAGGTGATCA 242
Query 449 GAGCTGGTGCGTTGCTAGAGAGAACGTTGCAAAAATGGCGTTACAAGCGGCTTTGGACTA 508
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 243 GAGCTGGTGCGTTGCTAGAGAGAGCGTTGCAAAAATGGCGTTACAAGCGGCTTTGGACTA 302
Query 509 TGCATGTGGGATTGGTGGAGCAGACTGCTCTGAGATACAAGAAGGAGGAAATTGTTATAA 568
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 303 TGCTTGTGGGATCGGTGGAGCAGACTGCTCGGAGATACAAGAAGGAGGAAATTGTTATAA 362
Query 569 CCCCAACTCGTTGAGAGCACATGCCTCTTTTGCCTTCAATAGTTATTACCAGAAGAATCC 628
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 363 CCCCAACTCGTTGAGAGCACATGCCTCTTTTGCCTTCAACAGTTATTACCAGAAGAATCC 422
Query 629 AATCCCTAGTAGTTGCAATTTTGATGGAACTGCTATCACTATCAGTGCTGACCCAAGTTT 688
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 423 AATCCCTAGTAGTTGCAATTTTGATGGAACTGCTGTCACTATCAGTGCTGACCCGAGTTT 482
Query 689 AGGTTCATGCCACTTTCCATCTACAAGCACGAGTGAATCGATATTGAACGTAACAAGTGA 748
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 483 AGGATCATGCCACTTTCCGTCTACAAGCACGAGTGAATCGATATTGAACGTAACAAGTGA 542
Query 749 AGATGGATTAGGGCTTTTCGGGAGAATACCATCTCATCCAACTCCCAAGCCTGAAGCTTC 808
|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 543 AGATGGATTAGGGCTTTTCGGGAGAATACCGTCACATCCAACTCCCAAGCCCGAAGCTTC 602
Query 809 AACCTCCTCCTCAAGAACTTTGATCTCATTTCTCTACTTC 848
|||||||||| | | |||||| ||||||||||||||||
Sbjct 603 AACCTCCTCCACCACAACTTT---CTCATTTCTCTACTTC 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37665441996
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5