BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30940.2
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482014 jgi|Araly1|482014|fgenesh2_kg.4__1074__AT2G30940.1 1958 0.0
> Ahg482014 jgi|Araly1|482014|fgenesh2_kg.4__1074__AT2G30940.1
Length=1338
Score = 1958 bits (1060), Expect = 0.0
Identities = 1218/1294 (94%), Gaps = 12/1294 (1%)
Strand=Plus/Plus
Query 12 GCTAGAGATTTTACTGATTCACACTCTTATTGATTCATCATCTTTATCACCACAAAGACT 71
||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 9 GCTTGAGATCTTACTGTTTCACACTCTCATTGATTCATCATCTTTATCACCACAAAGACT 68
Query 72 CAGAGTAATGAATAGAATCATATCATCACAAGGATCAGATTTGATCAAACAAAAACTCTC 131
|||||| ||||| ||||||||||||||||||||| |||| |||||| | || ||||||||
Sbjct 69 CAGAGTGATGAACAGAATCATATCATCACAAGGAACAGAATTGATCCAGCACAAACTCTC 128
Query 132 TCAACACACTTCCTTCTTCGGCATCAAGCTATGGATCCTCATCACAGCTTCTGCCTCCAT 191
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 129 TCAACACACTTCCTTCTTCGGCATCAAGCTATGGATCCTCATTACAGCTTCTGCCTCCAT 188
Query 192 AGCCTTCCTCTTAGTTCTGATAATTTCTGTCCTCCTCTGTTTCATATTTCACAGGAGAAG 251
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 189 AGCCTTCCTCTTAGTTCTCATTATTTCTGTCCTCCTCTGTTTCATCTTTCACAGGAGAAG 248
Query 252 ATGTAGCCAAGAACCATTCAGACTAAGATCAAAGCTTTGTCTACCTTTATCACACATTCC 311
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 249 GTGTAGACAAGAACCATTCAGACTAAGATCAAAGCTTTGTCTGCCTTTATCACACATTCC 308
Query 312 CTTAACTAACAAACAACAGATTCCTTATAACCGTTGCGGCGACGATATAGAGAGCCAGAG 371
| ||| |||||||| ||||||||| || |||||||||||||| ||| |||||||||||||
Sbjct 309 CATAAATAACAAACGACAGATTCCATACAACCGTTGCGGCGATGATGTAGAGAGCCAGAG 368
Query 372 AATCTCTCAGGTTGGTTGGTCCTCTGCTCGTCTTTCCTACTACACACGCAGCTTCTCCTC 431
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 369 AATCTCTCAGGTTGGTTGGTCCTCTGCTCATCTTTCCTACTACACACGCAGCTTCTCCTC 428
Query 432 TACCGGCAGCTTTGGAAGCTTCAATGTGTTTACGTTCATGGAGATCAAGAACGTGACAGA 491
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 429 TACCGGCAGCTTTGGAAGCTTCAATGTGTTTACGTTCTTGGAGATCAAGAACGTGACAGA 488
Query 492 TAGTTTTGCAGATGATAATGTGATTACTAAAGGAGATTCTTCAACGGTGTATCGCGGAAT 551
||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 489 TAGTTTTGCAGATTATAATCTGATTACTACAGGAGATTCTTCAACGGTGTATCGCGGAAT 548
Query 552 CTTGATGGGTACAGTCACTGTTGCTGTCAAACGATTCCTTCCA-AGTA-AT-AGCAGGTA 608
||||||||||||||||||||||||||||||||| ||| |||| | | || | |||||
Sbjct 549 CTTGATGGGTACAGTCACTGTTGCTGTCAAACGGTTC-TTCCCCA-TCCATCAA-AGGTA 605
Query 609 TGAAGATAAAGATTTCATTACAAAAGCTGAGATGATTGCAAATGTTAGACACAAGAATGT 668
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 606 TGAAGATAAAGATTTCATAACAAAAGCTGAGATGATTGCAAATGTTAGACACAAGAATGT 665
Query 669 TGTGAGACTCCTTGGATACTGCATAGAAGGAGATGAGAGGGTTCTTGTATATGAATACGC 728
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 666 TGTGAGACTTCTTGGATACTGCATTGAAGGAGATGAGAGGGTTCTTGTTTATGAATACGC 725
Query 729 TGAGAAAGGCGATTTGCACGAATGGCTTCATGGATCTGCAGGAAGAAATCGGCCTCTGAC 788
||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 726 TGAGAAAGGCGATTTGCACGAATGGCTTCATGGATCTTCCGGGAGAAATCGGCCTCTGAC 785
Query 789 TTGGAGAAAGAGGATGAAGATCATTCAAGGAGTAGCAAAAGGCCTTGCGTATATTCACGA 848
||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 786 CTGGAGGAAGAGGATGAAGATCATTCAAGGAGTAGCAAAAGGCCTCGCGTATTTTCACGA 845
Query 849 GGACATCGAACCAAAGATCACTCATCAAGACATAAGACCAAGCAAGATTCTTCTTGATTA 908
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 GGACATAGAACCAAAGATCACTCATCAAGACATAAGACCAAGCAAGATTCTTCTTGATTA 905
Query 909 TCAATGGAACCCTAAGATACTTGATGTTGGATTCATTGGTCACAGTGATATTCCAACTTT 968
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 TCAATGGAACCCTAAGATACTTGATGTTGGATTCATTGGTCACAGTGATATTCCAACTTC 965
Query 969 GATTCCTTCACCTGGTAATATGGATGAGAAAATCGACGTTTATTCCTTTGGGAATATGAT 1028
||||||||||||| ||||| |||||||||||||||||||||||||||| |||| | ||||
Sbjct 966 GATTCCTTCACCTAGTAATCTGGATGAGAAAATCGACGTTTATTCCTTCGGGACTTTGAT 1025
Query 1029 AATGGAGCTTGTCTCTGGGAGAGTCTCTGTAGACCAAAGTTCACCACATGTGAGAGTTTA 1088
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 1026 AATGGAGCTTGTCTCTGGAAGAGTCTCTGTAGACCAAAGTTCACCACATGT-----TT-A 1079
Query 1089 TCTAGTGGACTGGATCAAAGAGATGGTGGCAAATCATATGATAGTAGATGTTCTTGATCC 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TCTAGTGGACTGGATCAAAGAGATGGTGGCAAATCATATGATAGTAGATGTTCTTGATCC 1139
Query 1149 TAGTCTTCCCGAATTTCCTACAATAAAGGAACTCAAACGGATTGTGTTGATTTCCCTGCG 1208
||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1140 TAGCCTTCCCGAATTTCCTACAATAAAGGAACTCAAACGGATTGTGTTGATTGCCTTGCG 1199
Query 1209 TTGTGTTGATCCCGAGCTAAAAGAGAGACCTAAAATGGGAGATGTGATTCACATGCTCCA 1268
||||| |||| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CTGTGTCGATCTCGAGGTAGAAGAGAGACCTAAAATGGGAGATGTGATTCACATGCTCCA 1259
Query 1269 ACCACATGACTTGCTGCTGAATAACAATGCAATA 1302
|||||||||||||||| ||| |||||||| ||||
Sbjct 1260 ACCACATGACTTGCTGTTGAGTAACAATGTAATA 1293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50970340029
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5