BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30960.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900887 jgi|Araly1|900887|Al_scaffold_0004_1537 676 0.0
> Ahg900887 jgi|Araly1|900887|Al_scaffold_0004_1537
Length=801
Score = 676 bits (366), Expect = 0.0
Identities = 580/674 (86%), Gaps = 51/674 (8%)
Strand=Plus/Plus
Query 15 ATGGAGGAGAAGAACACAT-ACGGCAAAAGAAAGACTGTTCC-TCTGATTCCGGCTAACT 72
||||||||||||||||| | |||||||||||||||||||||| || |||||||||||| |
Sbjct 1 ATGGAGGAGAAGAACAC-TGACGGCAAAAGAAAGACTGTTCCTTC-GATTCCGGCTAATT 58
Query 73 ACATCAGCATCCTTCAGCTCCAGGAGCGTTGGCTCAATgagaaagagaagaagcg-aa-- 129
||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||
Sbjct 59 ACATCAGCATCCTTCAGCTTCAAGAGCGTTGGCTCAAAGAGAAAGAGAAGAAGCGAAAGG 118
Query 130 a-g--gaagaagaagagagacgacggaaactacaggctgaggaagagaaaaagatagagg 186
| | ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||
Sbjct 119 AGGAAGAAGAAGAAGAGAGACGCCGGAAACAACAAGCTGAGGAAGAGAAAAAGATAGAGG 178
Query 187 aagaagatctgaagaaagcggaggaggagaagCGTATGAATCGAAGTAATCGGAAGCATT 246
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
Sbjct 179 AAGAAGATCTGAAGAAAGCGGAGGAGGAGGAGCGTATGAATCGAAGTAATCGGAAACA-T 237
Query 247 TTGGGAGAAAAAAGGAATCTATAG-ACGGCGGAGAAGCACGATTCGTTGAGAAGGAGAAA 305
|| | | ||| ||| || || |||||||||||||| ||||||||||||||||||||
Sbjct 238 TT--G-G---AAA-GAA-ATA-AGAACGGCGGAGAAGCAAGATTCGTTGAGAAGGAGAAA 288
Query 306 CCGGAAGTCACGGTGGCGATCGAGAGCGGTGGAGGTGAAGATGCGGCGGATGGATTACCg 365
|||||||||||| |||||| |||||| |||||||||||||| ||||||| |||||||||
Sbjct 289 CCGGAAGTCACGACGGCGATGGAGAGCTGTGGAGGTGAAGATACGGCGGAGGGATTACCG 348
Query 366 aagaagaagaagaagaagaaTAAGGGAGCTTGGAGGAAACGATATAATAGCAAGACGAAT 425
||||||||||||||||| ||||||| || |||||||||||||| ||||||||| |||
Sbjct 349 AAGAAGAAGAAGAAGAA---TAAGGGATCTAGGAGGAAACGATATGATAGCAAGAAGAAG 405
Query 426 AAAAATCAAGATG-GAGCTGTGGTTGAGGATGTCATCGATTGCGGTTGTGTATCATCAAT 484
|| ||||||| | |||||||||||||||||| ||||||| |||||||||||| | |
Sbjct 406 AA---TCAAGATATG-GCTGTGGTTGAGGATGTCGTCGATTGTGGTTGTGTATCA--A-T 458
Query 485 CGTGCCGCCTGAGTCCGTCGTGACGGAGAATAATACTCCGGTGAAAGATGTGGTTCCAGT 544
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 459 CGCGCCGCCTGAGTCCGTCGTGACGGAGAATGTTACTCCGGTGAAAGATGTGGTTCGAGT 518
Query 545 TTATTGGATGAAAG---------CGACCAAATCTAAAGAGATTACCAAA-TCAATGGCCA 594
|||| ||| ||||| |||||||||| |||||| |||| | | | ||||||
Sbjct 519 TTATAGGAAGAAAGGAGAAAAAGCGACCAAATCAAAAGAGGTTACGGATGTGA-TGGCCA 577
Query 595 TAGAAACAC-AGTTTGAGAA-CTTCTCTATCAATAGAG--GAG-AAGCCAAAACTCTCAA 649
| ||||||| | |||||||| || | ||||||| |||| ||| || |||||| ||||||
Sbjct 578 TGGAAACACCA-TTTGAGAATCT-CACTATCAAAAGAGAAGAGGAAACCAAAAATCTCAA 635
Query 650 GACACAAACC-AAA 662
||| |||||| |||
Sbjct 636 GACGCAAACCCAAA 649
Score = 82.4 bits (44), Expect = 6e-15
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 733 AGAACGAGAGAGCTGGTGATGGAATTGCAAGTGGCGTGAAGCCATTTAATGCGTAA 788
|||| ||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 746 AGAAAGAGAGAGCTAATGATGGAATTGCAAGTGGCGTGAAGCCATTAAATGCGTAA 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5