BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30970.1
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482020 jgi|Araly1|482020|fgenesh2_kg.4__1080__AT2G30970.1 2495 0.0
Ahg937028 jgi|Araly1|937028|scaffold_501219.1 244 1e-63
> Ahg482020 jgi|Araly1|482020|fgenesh2_kg.4__1080__AT2G30970.1
Length=1592
Score = 2495 bits (1351), Expect = 0.0
Identities = 1519/1598 (95%), Gaps = 19/1598 (1%)
Strand=Plus/Plus
Query 15 CAACTTGTGCGACTCTCCTTCGTCCTCATCTGCCAAAAACTTCGTACGAGTCGCTA---- 70
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 CAACTTGTGCGACTCTCCTTCGTCCTCATCTGCC--AAACTTCGTACGAGTCGCTACTTC 58
Query 71 -CT-TCTCTCTCTATATATAAACTCCTTACCACTCTCTTTT-TCTGATTTTTTGACGTTA 127
|| ||||||||| |||||||||||||| | | | |||||| |||| | |||||||||||
Sbjct 59 TCTCTCTCTCTCTCTATATAAACTCCTTTCGATTATCTTTTCTCTG-TGTTTTGACGTTA 117
Query 128 agagatagaaacagagagagatagagagatagagTTATGGCTTTGGCGATGATGATCCGA 187
| ||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||
Sbjct 118 ACCGATAGAAACAGAGCGAG--AGAGAGAGAGAGTTATGGCTATGGCGATGATGATCCGA 175
Query 188 AACGCAGCTTCGAAGCGAGGAATGACTCCGATCTCCGGTCATTTCGGTGGTTTGAGATCT 247
||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 176 AACGCAGCTTCCAAGCGAGCAATGACTCCGATCTCCGGTGATTTCGGTGGTTTGAGATCT 235
Query 248 ATGTCTTCATGGTGGAAGAGCGTTGAGCCTGCTCCTAAAGATCCGATCCTCGGAGTTACC 307
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 236 ATGTCTTCATGGTGGAAGAGCGTTGAGCCTGCTCCTAAAGATCCAATCCTCGGAGTTACC 295
Query 308 GAAGCTTTTCTCGCTGATCCTAGTCCTGAAAAAGTTAATGTTGGTGTGGGAGCATATCGT 367
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 296 GAAGCTTTTCTCGCTGATCCTAGTCCTGAAAAAGTTAATGTTGGTGTGGGAGCGTATCGT 355
Query 368 GATGATAATGGGAAGCCTGTTGTCTTGGAATGTGTCAGAGAAGCTGAGAAAAGGCTTGCT 427
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 356 GATGATAATGGAAAGCCTGTTGTCTTGGAATGTGTCAGAGAAGCTGAGCAAAGGCTTGCT 415
Query 428 GGGAGCACTTTCATGGAGTACCTTCCTATGGGAGGAAGTGCCAAAATGGTGGACCTAACA 487
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 416 GGGAGCACTTTCATGGAGTACCTTCCTATGGGAGGGAGTGCCAAAATGGTGGACCTAACA 475
Query 488 TTGAAGCTTGCCTATGGGGACAATAGTGAATTTATCAAAGATAAAAGAATTGCTGCAGTT 547
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 476 TTGAAGCTTGCCTATGGGGACAATAGTGAATTTATCAAAGATAAAAGAATCGCTGCAGTT 535
Query 548 CAGACTCTGTCTGGCACTGGAGCCTGCCGGCTCTTTGCAGACTTCCAGAAACGTTTTTCT 607
||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| | |
Sbjct 536 CAGACTCTGTCTGGCACTGGAGCCTGCCGACTGTTTGCAGACTTTCAGAAACGTTTCTGT 595
Query 608 CCTGGTTCACAGATCTACATTCCTGTTCCAACCTGGTCCAACCACCACAACATCTGGAAA 667
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 596 CCTGGTTCACAGATCTACATTCCTGTACCAACCTGGTCCAACCACCACAACATCTGGAGA 655
Query 668 GATGCACAAGTCCCTCAAAAGACATATCATTACTATCATCCAGAAACCAAGGGCTTGGAT 727
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 656 GATGCACAAGTCCCTCAAAAGACATATCACTACTATCATCCAGAAACCAAGGGCTTGGAT 715
Query 728 TTCTCAGCATTGATGGATGATGTGAAGAATGCTCCGGAAGGGTCATTCTTCCTTCTTCAT 787
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 716 TTCTCAGCATTGATGGATGATGTGAAGAATGCTCCGGAAGGCTCATTCTTCCTTCTTCAT 775
Query 788 GCTTGTGCTCATAATCCTACTGGAGTAGACCCTACAGAGGAACAATGGAGAGAGATATCA 847
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 776 GCTTGTGCTCATAATCCTACTGGAGTTGACCCTACAGAGGAACAATGGAGAGAGATATCA 835
Query 848 CAGCTATTCAAGGCTAAAAAG-CATTTCGCATTCTTCGATATGGCTTACCAAGGTTTTGC 906
||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 836 CAGCTATTCAAGGCT-AAAAGTCATTTTGCATTCTTCGATATGGCGTACCAAGGTTTTGC 894
Query 907 TAGTGGAGATCCAGCGAGAGATGCCAAGTCCATCAGGATCTTTCTTGAAGATGGTCATCA 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TAGTGGAGATCCAGCGAGAGATGCCAAGTCCATCAGGATCTTTCTTGAAGATGGTCATCA 954
Query 967 TATTGGAATTTCTCAGTCCTATGCAAAAAACATGGGACTCTACGGCCAGAGGGTGGGATG 1026
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 955 TATTGGAATTTCTCAGTCCTATGCCAAAAACATGGGACTCTACGGCCAAAGGGTGGGATG 1014
Query 1027 TCTCAGTGTGCTTTGTGAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCAGCA 1086
|||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 1015 TCTCAGCGTGCTTTGTGAAGATGCAAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCAACA 1074
Query 1087 GCTAGCTAGACCAATGTACAGCAACCCACCTTTGCATGGTGCTCAGCTGGTCTCAACCAT 1146
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 1075 GCTAGCTAGACCAATGTACAGCAACCCACCTTTACATGGTGCGCAACTGGTCTCAACCAT 1134
Query 1147 TCTTGAAGACCCAGAGTTAAAGAGTCTGTGGCTAAAAGAAGTTAAGGTCATGGCTGATAG 1206
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1135 TCTTGAAGACCCAGAGTTAAAGAGTCTGTGGCTAAAGGAAGTTAAGGTCATGGCTGATCG 1194
Query 1207 GATCATCGGCATGAGAACTACTTTGCGAGAAAGCCTTGAGAAGTTAGGATCGCCTTTGTC 1266
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1195 AATCATTGGCATGAGAACTACTTTGCGAGAAAGCCTTGAGAAGTTAGGATCGCCTTTATC 1254
Query 1267 ATGGGAGCACGTTACCAAACAGATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACA 1326
||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1255 ATGGGAGCATGTTACCAAGCAGATTGGAATGTTCTGCTACAGTGGGCTAACACCAGAACA 1314
Query 1327 GGTTGACCGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAGTAT 1386
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1315 GGTAGACCGCTTAACAAGCGAATATCACATCTATATGACCCGTAATGGCCGTATCAGTAT 1374
Query 1387 GGCTGGTGTTACAACAGGAAACGTGGGATACCTTGCGAATGCTATACATGAAGTCACCAA 1446
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 GGCTGGTGTTACGACAGGAAACGTGGGATACCTTGCGAATGCTATACATGAAGTCACCAA 1434
Query 1447 GTCATCTTAAATCATTTACTTACATGTTTCAGCCAAACATACAAATTTTGTTTGAAGAGT 1506
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1435 GTCATCTTAATTTGTTTACTTACATGTTTCAGCCAAACATACAAATTTTGTTTGAAGATT 1494
Query 1507 CAATAAGACAGGAGGCTAGATTTGTACTTCTGCAATTGGTTTTGTGGGAACTGAAAGTTT 1566
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1495 CAATAAGACAGGAGGCAAGATTTGTACTTCTGCAATTGTTTTTGTGGGAACTGAAAGTTT 1554
Query 1567 ACCCATA--A-A--CAGTAATTTATTAGCGCATTTTTT 1599
||||||| | | ||||||||| | ||||||||||||
Sbjct 1555 ACCCATACCATAAACAGTAATTTGTCAGCGCATTTTTT 1592
> Ahg937028 jgi|Araly1|937028|scaffold_501219.1
Length=292
Score = 244 bits (132), Expect = 1e-63
Identities = 144/150 (96%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 1043 GAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCAGCAGCTAGCTAGACCAATG 1102
|||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 39 GAAGATGCAAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCAACAGCTAGCTAGACCAATG 98
Query 1103 TACAGCAACCCACCTTTGCATGGTGCTCAGCTGGTCTCAACCATTCTTGAAGACCCAGAG 1162
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 99 TACAGCAACCCACCTTTACATGGTGCTCAACTGGTCTCAACCATTCTTGAAGACCCAGAG 158
Query 1163 TTAAAGAGTCTGTGGCTAAAAGAAGTTAAG 1192
|||||||||||||||||||| |||||||||
Sbjct 159 TTAAAGAGTCTGTGGCTAAAGGAAGTTAAG 188
Score = 148 bits (80), Expect = 1e-34
Identities = 93/99 (94%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 1287 AGATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACAGGTTGACCGCTTAACAAGCG 1346
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 187 AGATTGGAATGTTCTGCTACAGTGGGCTAACACCAGAACAGGTAGACCGCTTAACAAGCG 246
Query 1347 AATATCACATCTATAT--GACCCGTAACGGCCGTATCAG 1383
|||||||||||||||| |||||| || |||||||||||
Sbjct 247 AATATCACATCTATATATGACCCGCAATGGCCGTATCAG 285
Score = 52.8 bits (28), Expect = 8e-06
Identities = 31/32 (97%), Gaps = 1/32 (3%)
Strand=Plus/Minus
Query 1417 CCTTGCGAATGCTATACATGAAGTCACC-AAG 1447
|||||||||||||||||||||||||||| |||
Sbjct 39 CCTTGCGAATGCTATACATGAAGTCACCCAAG 8
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63801160375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5