BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30980.1
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933625 jgi|Araly1|933625|scaffold_401613.1 2080 0.0
Ahg470656 jgi|Araly1|470656|fgenesh2_kg.1__610__AT1G06390.1 1478 0.0
> Ahg933625 jgi|Araly1|933625|scaffold_401613.1
Length=1279
Score = 2080 bits (1126), Expect = 0.0
Identities = 1229/1280 (96%), Gaps = 2/1280 (0%)
Strand=Plus/Plus
Query 60 AGTTAGAGCTGTAAAAGCACATGACTTCGATACCATTGGGGCCTCCTCAGCCTCCGTCTT 119
|||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||
Sbjct 1 AGTTAGAGCTGTAAAAGCACATGACTTCAATACCATTGGGGCATCCTCAGCCGCCGTCTT 60
Query 120 TAGCTCCTCAGCCGCCGCATCTTCACGGCGGAGATTCTTTGAAACGTCGTCCCGATATAG 179
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 61 TAGCTCCTCAGCCGCCGCATCTTCACGGCGGAGATGCTTTGAAACGTCGTCCCGATATGG 120
Query 180 ACAAC-GACAAGGAAATGTCTGCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCAC 238
| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 A-TTCAGACAAGGAAATGTCTTCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCAT 179
Query 239 ATAATTTCTACTACAATTGGAGGCAAAAATGGTGAACCTAAACAGACCATTAGTTACATG 298
|| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 180 ATCATTTCTACTACAATTGGTGGCAAAAATGGTGAACCTAAACAGACTATTAGTTACATG 239
Query 299 GCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGGCAAAATGCTTGGAA 358
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCCGAACGGGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGGCAAAATGCTTGGAA 299
Query 359 ACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAAGATCGCCGTTATAAAAACCGAGAG 418
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 ACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAAGATCGCCGCTATAAAAACCGAGAG 359
Query 419 TTGCAATTAATGCGACTAATGGACCATCCAAATGTGGTTTCCTTGAAGCATTGTTTCTTC 478
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 TTACAATTAATGCGACTAATGGACCACCCAAATGTGGTTTCCTTGAAGCATTGTTTCTTC 419
Query 479 TCTACAACGACTAGAGATGAGCTCTTCCTCAATCTCGTTATGGAGTATGTACCAGAGACA 538
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 TCTACAACCACTAGAGATGAGCTCTTCCTCAATCTGGTTATGGAGTATGTACCAGAGACG 479
Query 539 TTGTACCGGGTTTTGAAGCACTATACTAGTTCAAACCAGCGGATGCCTATCTTCTATGTC 598
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 480 CTGTACCGGGTTTTGAAGCACTATACTGGTTCAAACCAGCGGATGCCTATTTTCTATGTC 539
Query 599 AAACTTTACACATACCAAATCTTCAGAGGCTTGGCTTATATCCATACTGCTCCTGGTGTC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAACTTTACACATACCAAATCTTCAGAGGCTTGGCTTATATCCATACTGCTCCTGGTGTC 599
Query 659 TGCCACAGAGATGTGAAACCACAAAATCTTTTGGTTGATCCCCTCACCCATCAGTGTAAG 718
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGCCACAGAGATGTGAAACCTCAAAATCTTTTGGTTGATCCCCTCACCCATCAGTGTAAG 659
Query 719 CTCTGTGATTTTGGAAGTGCAAAAGTACTGGTGAAAGGTGAAGCAAACATATCATATATC 778
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 CTCTGTGATTTTGGAAGTGCAAAAGTATTGGTGAAAGGTGAAGCAAACATATCATATATC 719
Query 779 TGCTCTCGGTATTACCGAGCTCCAGAACTCATCTTTGGTGCCACAGAGTATACATCATCC 838
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 720 TGTTCTCGGTATTACCGAGCTCCAGAACTCATCTTTGGGGCTACAGAGTATACATCATCC 779
Query 839 ATTGATATATGGTCTGCTGGTTGTGTTCTGGCAGAGCTACTTCTTGGGCAGCCGTTATTC 898
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 780 ATTGATATATGGTCTGCTGGTTGTGTTCTGGCAGAGCTCCTACTTGGCCAGCCGTTATTC 839
Query 899 CCGGGAGAAAATTCTGTGGACCAGCTAGTGGAGATCATAAAGGTTCTTGGTACTCCAACT 958
|| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 840 CCCGGAGAGAACTCTGTGGATCAGCTAGTGGAGATCATAAAGGTTCTTGGTACTCCAACT 899
Query 959 CGCGAAGAAATCCGGTGCATGAACCCAAACTACACAGACTTCAGATTCCCACAAATCAAA 1018
|| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 900 CGAGAAGAAATTCGATGCATGAACCCAAACTACACCGACTTCAGATTCCCACAAATCAAA 959
Query 1019 GCCCACCCTTGGCATAAGGTTTTCCACAAGCGGATGCCTCCGGAAGCCATTGACCTTGCA 1078
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 960 GCTCACCCTTGGCATAAGGTTTTCCACAAGCGGATGCCTCCAGAAGCCATTGACCTCGCA 1019
Query 1079 TCTCGGCTTCTTCAATACTCACCAAGTCTACGTTGCACTGCGCTCGAGGCATGTGCGCAT 1138
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1020 TCTCGACTTCTTCAATACTCACCAAGTCTACGTTGCACTGCGCTCGAAGCATGTGCACAT 1079
Query 1139 CCGTTTTTCAATGAACTCCGTGAGCCAAATGCTCGTCTTCCAAATGGCCGACCTCTACCA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CCGTTTTTCAATGAACTCCGTGAGCCAAATGCTCGTCTTCCAAATGGCCGACCTCTACCA 1139
Query 1199 CCGTTGTTCAACTTCAAACAAGAGTTGTCTGGGGCTTCACCGGAGCTTATCAACAGGCTA 1258
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1140 CCGTTGTTCAACTTCAAACAAGAGTTGTCTGGGGCGTCACCGGAGCTTATCAACAGGCTA 1199
Query 1259 ATACCAGAGCATGTGAGGCGACAGATGAATGGTGGCTTTCCATTTCAAGCTGGACCCTAG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1200 ATACCAGAGCATGTGAGGCGACAGATGAATGGTGGCTTTCCATTTCAAGCTGGTCCCTAG 1259
Query 1319 AAAAGCGATCTCGAGATGCT 1338
|||| |||| |||| |||||
Sbjct 1260 AAAAACGATTTCGAAATGCT 1279
> Ahg470656 jgi|Araly1|470656|fgenesh2_kg.1__610__AT1G06390.1
Length=1604
Score = 1478 bits (800), Expect = 0.0
Identities = 1101/1246 (88%), Gaps = 22/1246 (2%)
Strand=Plus/Plus
Query 52 GAGAGAGAAGTTAGAGCTGTAAAAGCACATGACTTCGA-TACCATTGGGGCCTCCTCAGC 110
||||||||| |||| | ||||||||||| | || | |||||||||||||| | | ||
Sbjct 15 GAGAGAGAA--AAGAG-TAAAAAAGCACATGGCCTC-ATTACCATTGGGGCCT-C-C-GC 67
Query 111 CTC-CG-TCTT--T--AGCTCCTCAGCCGCCGCATCTTCACGGCGGAGATTCTTTGAAAC 164
||| | |||| | | |||| | || |||||| ||||||| ||| || |||||||||
Sbjct 68 CTCATGCTCTTGCTCCACCTCCGCCGCAGCCGCAGCTTCACGACGGCGACGCTTTGAAAC 127
Query 165 GTCGTCCCGATATAGACAAC-GACAAGGAAATGTCTGCTGCTGTTATAGAAGGAAATGAT 223
| ||||| || || || | || ||||||||||||||||||||||| || |||||||||
Sbjct 128 GCCGTCCTGAAATGGA-TTCTGATAAGGAAATGTCTGCTGCTGTTATTGAGGGAAATGAT 186
Query 224 GCTGTTACCGGTCACATAATTTCTACTACAATTGGAGGCAAAAATGGTGAACCTAAACAG 283
|||||||||||||| || ||||| ||||| ||||| ||||||||||||||||| || |||
Sbjct 187 GCTGTTACCGGTCATATCATTTCCACTACCATTGGGGGCAAAAATGGTGAACCGAAGCAG 246
Query 284 ACCATTAGTTACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG 343
||||||||||||||||| || || |||||||||||||| |||||||||||||| ||||||
Sbjct 247 ACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGAATTGTTTTCCAG 306
Query 344 GCAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAGAAGGTTTTGCAAGATCGCCGT 403
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 307 GCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAAGATCGACGC 366
Query 404 TATAAAAACCGAGAGTTGCAATTAATGCGACTAATGGACCATCCAAATGTGGTTTCCTTG 463
|| |||||||| ||||||||| ||||||||| |||||| || |||||||| | ||||||
Sbjct 367 TACAAAAACCGTGAGTTGCAACTAATGCGACCAATGGATCACCCAAATGTCATCTCCTTG 426
Query 464 AAGCATTGTTTCTTCTCTACAACGACTAGAGATGAGCTCTTCCTCAATCTCGTTATGGAG 523
||||||||||||||||||||||| | ||||||||||||||||||||| || |||||||||
Sbjct 427 AAGCATTGTTTCTTCTCTACAACAAGTAGAGATGAGCTCTTCCTCAACCTTGTTATGGAG 486
Query 524 TATGTACCAGAGACATTGTACCGGGTTTTGAAGCACTATACTAGTTCAAACCAGCGGATG 583
|||||||| ||||| |||||||||||||||| |||||||||||||||||| ||| |||||
Sbjct 487 TATGTACCTGAGACTTTGTACCGGGTTTTGAGGCACTATACTAGTTCAAATCAGAGGATG 546
Query 584 CCTATCTTCTATGTCAAACTTTACACATACCAAATCTTCAGAGGCTTGGCTTATATCCAT 643
|| || ||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||
Sbjct 547 CCAATTTTCTATGTCAAACTTTACACATATCAAATCTTTAGAGGTTTGGCTTACATCCAT 606
Query 644 ACTGCTCCTGGTGTCTGCCACAGAGATGTGAAACCACAAAATCTTTTGGTTGATCCCCTC 703
|||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 607 ACTGTTCCCGGTGTTTGCCACAGAGATGTGAAACCACAAAATCTGTTGGTTGATCCCTTG 666
Query 704 ACCCATCAGTGT-AAGCTCTGTGATTTTGGAAGTGCAAAAGTACTGGTGAAAGGTGAAGC 762
||||||||| || ||||| |||||||||||||||||||||||| |||| |||||||||||
Sbjct 667 ACCCATCAG-GTTAAGCTGTGTGATTTTGGAAGTGCAAAAGTATTGGTCAAAGGTGAAGC 725
Query 763 AAACATATCATATATCTGCTCTCGGTATTACCGAGCTCCAGAACTCATCTTTGGTGCCAC 822
||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||
Sbjct 726 AAACATATCATATATCTGCTCCCGTTATTATCGAGCTCCAGAACTCATCTTTGGCGCCAC 785
Query 823 AGAGTATACATCATCCATTGATATATGGTCTGCTGGTTGTGTTCTGGCAGAGCTACTTCT 882
|||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 786 AGAGTATACAGCATCCATAGATATATGGTCCGCTGGTTGTGTTCTGGCAGAGCTTCTTCT 845
Query 883 TGGGCAGCCGTTATTCCCGGGAGAAAATTCTGTGGACCAGCTAGTGGAGATCATAAAGGT 942
||| ||||||||||| || ||||||||||| || || ||||| |||||||||||||||||
Sbjct 846 TGGCCAGCCGTTATTTCCAGGAGAAAATTCAGTTGATCAGCTTGTGGAGATCATAAAGGT 905
Query 943 TCTTGGTACTCCAACTCGCGAAGAAATCCGGTGCATGAACCCAAACTACACAGACTTCAG 1002
|||||||||||||||||| |||||||| || || ||||||||||||||||||||||| ||
Sbjct 906 TCTTGGTACTCCAACTCGTGAAGAAATTCGATGTATGAACCCAAACTACACAGACTTTAG 965
Query 1003 ATTCCCACAAATCAAAGCCCACCCTTGGCATAAGGTTTTCCACAAGCGGATGCCTCCGGA 1062
||||||||||||||||| ||||||||| | |||||||| || |||||||||||||| ||
Sbjct 966 GTTCCCACAAATCAAAGCTCACCCTTGGTACAAGGTTTTTCATAAGCGGATGCCTCCAGA 1025
Query 1063 AGCCATTGACCTTGCATCTCGGCTTCTTCAATACTCACCAAGTCTACGTTGCACTGCGCT 1122
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 1026 AGCCATTGACCTTGCATCTCGGCTTCTTCAATATTCACCAAGCCTACGCTGCACTGCGCT 1085
Query 1123 CGAGGCATGTGCGCATCCGTTTTTCAATGAACTCCGTGAGCCAAATGCTCGTCTTCCAAA 1182
||| |||||||| ||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1086 CGAAGCATGTGCCCATCCGTTTTTCAATGAACTCCGAGAGCCAAACGCCCGTCTTCCAAA 1145
Query 1183 TGGCCGACC-TCTACCACCGTTGTTCAACTTCAAACAAGAGTT-GTCTGGGGCTTCACCG 1240
||| || || | |||| || ||||||| |||||||||||||| | ||| |||||| |
Sbjct 1146 TGGTCGTCCAT-TACCGCCACTGTTCAATTTCAAACAAGAGTTAGG-TGGAGCTTCAGTG 1203
Query 1241 GAGCTTATCAACAGGCTAATACCAGAGCATGTGAGGCGACAGATGA 1286
||||| || |||||||||||||| ||||||||||| ||||||||||
Sbjct 1204 GAGCTAATAAACAGGCTAATACCTGAGCATGTGAGACGACAGATGA 1249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59915955385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5