BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G30984.1

Length=710
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg900890 jgi|Araly1|900890|Al_scaffold_0004_1540                    289    2e-77


> Ahg900890 jgi|Araly1|900890|Al_scaffold_0004_1540
Length=201

 Score =  289 bits (156),  Expect = 2e-77
 Identities = 186/201 (93%), Gaps = 0/201 (0%)
 Strand=Plus/Plus

Query  70   ATGAAAGAAGCTGCTGCTTTTGGGGGTGTTTTGTTCTTGATTTTCATGTTTCTTCTGTCG  129
            ||||||||||||  ||||||||||| || |||||||||||| |||||||||||| |||| 
Sbjct  1    ATGAAAGAAGCTATTGCTTTTGGGGATGGTTTGTTCTTGATCTTCATGTTTCTTTTGTCT  60

Query  130  TTGTTACTTGTAACCATGGCCGTATTTGCTTGCTCCAAAAAGAAGGAAAAGAAGAAGGAT  189
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTGTTACTTGTAACCATGGCGGTATTTGCTTGCTCCAAAAAGAAGGAAAAGAAGAAGGAT  120

Query  190  TCAAGTTGCTGTTGCTGCTGTAAAGGTGGCGTTTTTGGCGGTTGCAGTGGTGATGGTGGT  249
            ||| || |||||||||||||||||||||||| || |||||||||| ||||||||||||||
Sbjct  121  TCAGGTAGCTGTTGCTGCTGTAAAGGTGGCGGTTGTGGCGGTTGCTGTGGTGATGGTGGT  180

Query  250  GGAGGAGGAGGGGGTTGCTAG  270
            ||||||||||| ||||| |||
Sbjct  181  GGAGGAGGAGGAGGTTGTTAG  201



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26114198145


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5