BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30984.1 Length=710 Score E Sequences producing significant alignments: (Bits) Value Ahg900890 jgi|Araly1|900890|Al_scaffold_0004_1540 289 2e-77 > Ahg900890 jgi|Araly1|900890|Al_scaffold_0004_1540 Length=201 Score = 289 bits (156), Expect = 2e-77 Identities = 186/201 (93%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 70 ATGAAAGAAGCTGCTGCTTTTGGGGGTGTTTTGTTCTTGATTTTCATGTTTCTTCTGTCG 129 |||||||||||| ||||||||||| || |||||||||||| |||||||||||| |||| Sbjct 1 ATGAAAGAAGCTATTGCTTTTGGGGATGGTTTGTTCTTGATCTTCATGTTTCTTTTGTCT 60 Query 130 TTGTTACTTGTAACCATGGCCGTATTTGCTTGCTCCAAAAAGAAGGAAAAGAAGAAGGAT 189 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTGTTACTTGTAACCATGGCGGTATTTGCTTGCTCCAAAAAGAAGGAAAAGAAGAAGGAT 120 Query 190 TCAAGTTGCTGTTGCTGCTGTAAAGGTGGCGTTTTTGGCGGTTGCAGTGGTGATGGTGGT 249 ||| || |||||||||||||||||||||||| || |||||||||| |||||||||||||| Sbjct 121 TCAGGTAGCTGTTGCTGCTGTAAAGGTGGCGGTTGTGGCGGTTGCTGTGGTGATGGTGGT 180 Query 250 GGAGGAGGAGGGGGTTGCTAG 270 ||||||||||| ||||| ||| Sbjct 181 GGAGGAGGAGGAGGTTGTTAG 201 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26114198145 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5