BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30990.1
Length=2103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482023 jgi|Araly1|482023|fgenesh2_kg.4__1083__AT2G30990.2 2569 0.0
> Ahg482023 jgi|Araly1|482023|fgenesh2_kg.4__1083__AT2G30990.2
Length=2082
Score = 2569 bits (1391), Expect = 0.0
Identities = 1824/2019 (90%), Gaps = 86/2019 (4%)
Strand=Plus/Plus
Query 129 ATGTTAATGGGGAGCTTAATGATGGAAGAGAAGCAACTGGATTTCAACCGTCCGCTTATA 188
||||||||||||||||| |||||||||||||||||| | ||||||||||| |||||||||
Sbjct 106 ATGTTAATGGGGAGCTTCATGATGGAAGAGAAGCAATTAGATTTCAACCGCCCGCTTATA 165
Query 189 TCCATTAGACGGCCTACACAAACTTCAGAATCTGAGAGCAAAACAAGATCTTTTGATTCA 248
||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 166 TCCGTTAGAAGGCCTGCACAAACTTCAGAATCTGAGAGCAAAACAAGATCTTTTGATGCA 225
Query 249 GTAACCAACATGATTCCTCCTTCTCCACCAGTTTACAAGTCTGATATCAAGTCAGGTCCT 308
| || | || |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 226 GCAAATAGCAAGATTCCTCCTTCTCCACCGGTTTACAAGTCTGATATCAAGTCAGGTCCT 285
Query 309 GTGAGAAATCCAGGAACTGTTCCTTTTCAATGGGAACATAAGCCTGGAAAGCCAAAAGAC 368
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 286 GTGAGAAATCCAGGAACTGTTCCTTTTCAATGGGAACATAAGCCAGGAAAGCCGAAAGAC 345
Query 369 GAAAGGAAACCGGTTTTGCAAAGTTTTGTAGAGCCACATTTTGTGCCAAAGCTTCCTCCT 428
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GAAAGGAAACCGGTTTTACAAAGTTTTGTAGAGCCACATTTTGTGCCAAAGCTTCCTCCT 405
Query 429 GGTAGAGAGCGAGTAGTAGAGTTAGGGAGGAAACCTGAAAGTACTGGAGCTGATCACCAG 488
|||||||||| | ||||||||||| ||||||||||| || ||| ||||||||||||||
Sbjct 406 GGTAGAGAGC--G-AGTAGAGTTAGTGAGGAAACCTG-AA--ACTAGAGCTGATCACCAG 459
Query 489 ACCAAAACTGTATCGTCTTCGGATAAATATCTTGTGGAGGATGCAAAGAGTAATAGTTCT 548
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 460 ACCAAAACTGTATCGTCTTCGGATAAAAATCTTGTGGAGGATGCAAAGAGTTATAGTTCT 519
Query 549 CGGTatgatgatgatgatgatgatagtgatgGTACTTATCTTGATGCAACTGATACACTT 608
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 CGG--T-ATGATGATGATGATGATAGTGATGGTACTTATCTTGATGCAACTGATACACTT 576
Query 609 TCAAGAACTGAGTCATTCTTCTTT-AACTGTAGTGCTGTTAGTGGTGCGAGTGGTTTGGA 667
|||||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||||||
Sbjct 577 TCAAGAACTGAGTCATTCTT-TTTCAACTGTAGTGCTGTTAGTGGTGTGAGCGGTTTGGA 635
Query 668 TGGTTCAGGGATACTAGTAGAGCCATTTGGAACTTTATCGACTGATCGACAAACTCAGGA 727
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 636 TGGTTCCGGGATACTAGTAGAGCCATTTGGAACTTTATCGAGTGATCGACAAACTCAGGA 695
Query 728 TCTAATGATGGGGAGATTCTTGCCTGCAGCTAAAGCTTTGACTTCAGAATCACCTCCACA 787
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 696 TCTAATGATGGGGAGATTCTTGCCTGCAGCTAAAGCTTTGACTTCAGAAACACCTCCACA 755
Query 788 TCTTGCTAGGAAACCACCTAAACCAGAAG-A---AC----C-G--G-TGAAGCA-GTTG- 833
|||| |||||||||| ||||||||||||| | || | | | ||||| | || |
Sbjct 756 TCTTACTAGGAAACCGCCTAAACCAGAAGAACCGACTAAGCAGTTGATGAAGAAGGTAGT 815
Query 834 A-T-G--AAGAAGAAACAGAACAAAGTGGAGCAAAATCCGTATCGGTTTCGTCATTCGCC 889
| | | ||| |||||||||||||||| |||||||||||||||||||||| ||||||| |
Sbjct 816 ACTGGTAAAGGAGAAACAGAACAAAGTTGAGCAAAATCCGTATCGGTTTCATCATTCGTC 875
Query 890 TGATCAAGAAGAGGAAGATGGAAATATAAGCAGCATGATGGCGTCTGGTGTTTGTGGATT 949
|||||||||||||||||||| ||||| |||||||||| || ||| || ||||||||||
Sbjct 876 TGATCAAGAAGAGGAAGATGAAAATACAAGCAGCATG--GG-TTCTAGTATTTGTGGATT 932
Query 950 ACTCCCTCA-ACTCTGCTTGAGAAGCTCTTTGGGACTATTGAATCCGGTTCCATCTGTGA 1008
| | ||||| | | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 933 AGTTCCTCAGA-TATGCTTGAGAAGCTCTTTAGGACTATTGAATCCGGTTCCATCTGTGA 991
Query 1009 GAATGC-AGCAACAAAGAGCTGTTTCTGTTCGTCGTATGCGGTCTAAGTACCAAGATTCT 1067
|||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 992 GAATGCAAGC-ACAAAGAGCTGTTTCTGTTCGTCGTATGCGGTCTAAGTATCAAGATTCT 1050
Query 1068 GCACCTTCTAATGAAACTCATAACAAG-----C-----AA-----AATGAAGATAAGAGG 1112
|||||| |||||||| ||| ||||| | || |||||||||||||||
Sbjct 1051 ACACCTTGTAATGAAAGTCAGGACAAGAAAACCTATGAAACTGTGAATGAAGATAAGAGG 1110
Query 1113 AAGTTGAAGCTAATTGAATCAGTTGCAAAAGGGTC-TTCTCAAGGTGAGTCATTATCAGT 1171
||||||||||||| || |||||||||| ||| | | |||||||| |||||||||||||||
Sbjct 1111 AAGTTGAAGCTAAATGGATCAGTTGCACAAGTG-CATTCTCAAGATGAGTCATTATCAGT 1169
Query 1172 ATCTTCTATACCACAAGGAAAAGAGAAACTCGAGAACGTT-GGCACCGCTTCACGCAGTA 1230
||||||||| ||||||||||| || |||||||||| | || ||||||||||||||| ||
Sbjct 1170 ATCTTCTATTCCACAAGGAAAGGAAAAACTCGAGAGC-TTCTGCACCGCTTCACGCACTA 1228
Query 1231 AAATCAGTAAAAACTTTGGTGAGCTCTTGGCTAGTGATGAGAATACATGGGAACCTTCAT 1290
||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1229 AAACCAGCAAAAACTTTGGTGAGCTCTTGGCTAGTGATGATAATACATGGGAACCTTCGT 1288
Query 1291 CCGAGACTCCTGTGGCAGAGAAAACTCTGTATGTAGACATTGTGCA-TCTAGTAGATAAG 1349
| ||||||| |||||| |||||||||||||||||||||| ||||| || ||||||||||
Sbjct 1289 CTGAGACTCTTGTGGCTGAGAAAACTCTGTATGTAGACACCGTGCATTC-AGTAGATAAG 1347
Query 1350 AAGGTACAAGAAGAGTCCAAGAAGCAGCCTATATTGAAAGAGTCTCCTTCACTAGACATT 1409
|||||||||||||||||||||||||| || ||| ||||| | |||||||||||||||
Sbjct 1348 AAGGTACAAGAAGAGTCCAAGAAGCAATCTTTATCAAAAGACTATCCTTCACTAGACATC 1407
Query 1410 GTTCCTGTAAAAGATGAAGAAGCTGATATCTCGCAGCCTAAAAGCATTGAGCAAGAGAAT 1469
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1408 GTTCCTGTAAAAGATGAAGAAGCTGCTATCTCGCAGCCTAAAAGCATTGAGCAAAAGAAT 1467
Query 1470 GGTAACAGAGATGAGGATTTCACTAAATTCTCAAGTCAGAAAGTTGAAGAATGTCCTGAT 1529
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1468 GGTAACAGAGATGAGGATTTCACTAAATTCTCTAGTCAGAAAGTTGAAGAATGTCCTG-- 1525
Query 1530 CATCAAGCTATTGTTGCACTGCCAGAATCCGATGTGGTAGAGATTACAAAGGAGAAGAAG 1589
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1526 -ATCAAGCTATTATTGCACTGCCAGAATCCAATGTGGTAGAGATTACAAAGGAGAAGAAG 1584
Query 1590 ATTGATCTTGAAGTTCAGTTGCAAGTAATCACAACAAATATTGAAAGTTCAAGGCTTCAT 1649
|||||||||||||| |||||||| | ||||||||||||| ||||||| ||||||||||||
Sbjct 1585 ATTGATCTTGAAGTCCAGTTGCAGGGAATCACAACAAATCTTGAAAGCTCAAGGCTTCAT 1644
Query 1650 CATCGTTCAAGTTATCTCATTGTTCCTCCACCACCATTACCAAAAGCTCCTTCAGATTCT 1709
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 CATCGTTCAACTTATCACATTGTTCCTCCACCACCATTACCAAAAGCTCCTTCAGATTCT 1704
Query 1710 TGGTTAAAGCGTACATTACCAACAATACCACCAAAAAACAACTCATTCGCATGGTTACAG 1769
||||||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||||
Sbjct 1705 TGGTTAAAGCGCACATTACCAACGATACCATCAAAGAACAACTCATTCGCATGGTTACAG 1764
Query 1770 TCTCTTGGCACTGATGATGATAATCACTTTACCAAGACTCAAGCTAATCCAAAGTGGGAA 1829
|||||||||||||||||| | | |||||| ||||||||||||||||||||||||||||||
Sbjct 1765 TCTCTTGGCACTGATGAT-A-A-TCACTTCACCAAGACTCAAGCTAATCCAAAGTGGGAA 1821
Query 1830 ACTATGGTCAAAACGTCCAATACACAGCAAGGGTTTGTGTGCTTCTCCAAGGAAACACTA 1889
|||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||
Sbjct 1822 ACTATGGTCAAAACGTCCAATACAGAACAAGGTTTTGTTTGCTTCTCCAAGGAAACACTA 1881
Query 1890 AACCCTATACCAGAGTCATAGCAAGACCAAAACAAAATTCTCACTGGTGGTAATGAAGAA 1949
||| |||||||||||||||||||||||||||||||| | | || || ||||
Sbjct 1882 AACTCTATACCAGAGTCATAGCAAGACCAAAACAAA-TA---A-TG-----AA-GAAGG- 1929
Query 1950 ACTGTAAAATTTTTCACACCAAATTACATGTAAATTTTCAACAAT-AA-AGAA--GGGAT 2005
|||||| |||||||||||||||||||||||||||| ||||||| || | || |||||
Sbjct 1930 --TGTAAA-TTTTTCACACCAAATTACATGTAAATTT-CAACAATTAATAAAAAAGGGAT 1985
Query 2006 GAGCCAATAAAGTTTGGGTAT-TTTGTCTTTAACTATTTGTGTAAATCTGAATCAAAAAG 2064
| ||||| ||||||||||| | |||||||||| |||||||||||||||||||||||| |
Sbjct 1986 GGGCCAACAAAGTTTGGGT-TCTTTGTCTTTAGTTATTTGTGTAAATCTGAATCAAAA-G 2043
Query 2065 ATTCCATGATAAAGAGAAAGCAATGGAGATAAATGTCTT 2103
||||||| ||||||||||||| |||||||||| ||||||
Sbjct 2044 ATTCCATAATAAAGAGAAAGCTATGGAGATAATTGTCTT 2082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79113438865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5