BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31040.1
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482029 jgi|Araly1|482029|fgenesh2_kg.4__1089__AT2G31040.1 1947 0.0
> Ahg482029 jgi|Araly1|482029|fgenesh2_kg.4__1089__AT2G31040.1
Length=1281
Score = 1947 bits (1054), Expect = 0.0
Identities = 1212/1285 (94%), Gaps = 23/1285 (2%)
Strand=Plus/Plus
Query 48 TCATAAGC-TCCACAAAAAACTCATCCATGGCGATTCTTAGTTACATCTCAGCAACATCA 106
|||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TCATAA-CATCCACAAGAAACTCATCCATGGCGATTCTTAGTTACATCTCAGCAACATCA 60
Query 107 ACCACACCACCAATTCCTCAAGATCAATCTCCCAATTCTCGTCTACCAACCAAAATCATT 166
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 ACTACACCACCGATTCCTCAAGATCAATCACCCAATTCTCGTCTACCAACCAAAATCATT 120
Query 167 CTACCCAATAAGAAACCTGAGAAATGGTCCACCGGAGTTGCTCCCGGAGAGTACGGTGGT 226
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 CTACCCAATAAGAAACCGGAGAAATGGTCCACCGGCGTTGCTCCCGGAGAGTACGGTGGT 180
Query 227 CCTCCGACTACCACCAAGCTCCGAAAGTACTGGGGAGGTGAAAAAGAAGATCCCATTACT 286
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CCTCCGACCACCACCAAGCTTCGAAAGTACTGGGGAGGAGAAAAAGAAGATCCCATTACT 240
Query 287 TCCACAGACTTAATCTGGAACAGAGATTTTATGGATCAAATGAAGAAATTGTTTGATGAT 346
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 241 TCCACAGACTTAATCTGGAACAGAGATTTTATGGATCAAATGAAGAAATTGTTCGATTCT 300
Query 347 CCTAATGATTCTTCTCTCGACCCATCTCCTTCAAAGGAAAAGTCTTCTGGGTTTCTGAGC 406
||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 301 CCTGATGATTCTTCTCTCGACCCATCTCCCTCAAAGGAAGAGTCTTCTGGGTTTCTGAGC 360
Query 407 TTTAGCAGAGTTATGAGTCTTGACAGTATGGATGTTGATTTAAGTAAAGAGCTTGCA-TC 465
||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| |
Sbjct 361 TTTAGTAGAGTTATGAGTCTTGACAGTATGGATGTTGATTTGAGCAAAGAGCTTGCAGT- 419
Query 466 GTCTTCTAAATCCGTTGTGAAAAATCGTCTTGACACCTCCAAGTCAGAAGCTAAAAAGCA 525
|||||||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 420 GTCTTCTAAACCCGTTGTGAAAGATCTTCTTGACACCTCCAAGTTAGAAGCTAAAAAGCA 479
Query 526 AATGAGTAAGGCTATTGTGTCTCCTAAATGGAAGCTGGCACCTACACGTCGTGAGCAAGA 585
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 AATGAGTAAGGCTATTGTGTCTCCTAAATGGAAGCTGGCACCAACACGTCGTGAGCAAGA 539
Query 586 GAAATGGGATAGAGCAACGAAGGCTGCAACTGGTGGCAGTGATGTGATGTTTAGGGAGCT 645
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAAATGGGATAGAGCAACTAAGGCTGCAACTGGTGGCAGTGATGTGATGTTTAGGGAGCT 599
Query 646 GAGACGGCCACGTGGTGACCCAGAAGTACAAGCTGCTAAAGACAGGGAACAATATTTTAA 705
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 600 GAGGCGGCCACGTGGTGACCCAGAAGTACAGGCTGCTAAAGACAGGGAACAATATTTCAA 659
Query 706 GCTGAAAAATAAGATTCAGGTTCTCACACTCGGTATTGGTGGTGTTGGTTTAGTCTCAGC 765
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 660 GCTGAAAAATAAGATACAGGTTCTCACACTCGGTATTGGCGGTGTTGGTTTAGTCTCAGC 719
Query 766 TTATATCTCATACACCCCAGAGATAGCACTTAGTTTTGGTGCTGGCTTGTTGGGTTCACT 825
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 TTATATCTCATACACCCCAGAGATAGCACTTAGTTTTGGTGCTGGCTTGATGGGTTCACT 779
Query 826 TGCATATATGAGGATGCTTGGTAACTCTGTAGATGCCATGGCAGATGGAGCCAGAGGAGT 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGCATATATGAGGATGCTTGGTAACTCTGTAGATGCCATGGCAGATGGAGCCAGAGGAGT 839
Query 886 TGCCAAAGGTGCAGCTAACCAGCCACGGTTACTAGTCCCCGTTGTGTTGGTTATGATATT 945
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGTCAAAGGTGCAGCTAACCAGCCACGGTTACTAGTCCCCGTTGTGTTGGTTATGATATT 899
Query 946 CAATAGATGGAACGCAATACTTGTTCCTGAGTATGGATTCATGCATTTGGAGTTGATACC 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CAATAGATGGAACGCAATACTTGTTCCTGAGTATGGATTCATGCATTTGGAGTTGATACC 959
Query 1006 AATGTTGGTTGGGTTCTTTACTTACAAAATTGCTACGTTCTTTCAAGCTATAGAAGAAGC 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AATGTTGGTTGGGTTCTTTACTTACAAAATTGCTACGTTCTTTCAAGCTATAGAAGAAGC 1019
Query 1066 CATCTCCATTACTACTCAAAAACCCGAATCAATC-TCTCCAGACACACAGGCCAGTGATT 1124
||| ||||||||||| ||||||||||||||| || ||||| |||| | ||||||||||||
Sbjct 1020 CATTTCCATTACTACCCAAAAACCCGAATCA-TCATCTCCTGACATAGAGGCCAGTGATT 1078
Query 1125 AATAAGGTCAAGGTCAGTGTTGTAAGAAATGTAATTAA-ACACAGAAGTGTTAATGTAAT 1183
||||||||| | |||||||||||||||||||||||| | ||||| ||| |||||||||||
Sbjct 1079 AATAAGGTCGATGTCAGTGTTGTAAGAAATGTAATTTATACACAAAAGCGTTAATGTAAT 1138
Query 1184 AAAAACT-AATAA-------CTCATAAACTCATTCATACCAGCAAATCACCAAGAGATAG 1235
||||||| ||||| |||| ||| ||||||||| ||||||||||||||||||| |
Sbjct 1139 AAAAACTTAATAAGTAATAACTCAGAAATTCATTCATAGCAGCAAATCACCAAGAGAT-G 1197
Query 1236 -ATAGCTA-GAACATATAAAGCAAATGCAGAAAGAGTGAA-ACATAGAAAGTTAA-TGAC 1291
| | ||| |||||||||||||||||||| ||||||| || |||||||||||||| |||
Sbjct 1198 CACAACTAAGAACATATAAAGCAAATGCATAAAGAGT-AAGACATAGAAAGTTAACTGAA 1256
Query 1292 -TT-TGAAATTTTTAGACCAAACCG 1314
|| ||| ||||| |||||||||||
Sbjct 1257 ATTATGATATTTTCAGACCAAACCG 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49140440013
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5