BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31050.1
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900732 jgi|Araly1|900732|Al_scaffold_0004_1382 658 0.0
Ahg900904 jgi|Araly1|900904|Al_scaffold_0004_1554 630 3e-180
Ahg933650 jgi|Araly1|933650|scaffold_401638.1 387 7e-107
> Ahg900732 jgi|Araly1|900732|Al_scaffold_0004_1382
Length=576
Score = 658 bits (356), Expect = 0.0
Identities = 511/580 (88%), Gaps = 33/580 (6%)
Strand=Plus/Plus
Query 24 CTTCTTTACTTCTTTGCTTATTCTTGTAGCACTTTTTGGAATTTCCGTTGGAGGAACCGT 83
|||||||||||||||| | |||||||||| ||||| |||| ||||| |||||||||||||
Sbjct 6 CTTCTTTACTTCTTTGATAATTCTTGTAGTACTTTGTGGAGTTTCCATTGGAGGAACCGT 65
Query 84 TCACAAAGTTGGTGACTCCGACGGATGGACGATTATGAGCGTC---AACTACGA-GACAT 139
||||||||| ||||||||||||||||||||||| ||||||||| || ||||| || ||
Sbjct 66 TCACAAAGTCGGTGACTCCGACGGATGGACGATAATGAGCGTCAATAATTACGACGA-AT 124
Query 140 GGGCATCTACAATAACTTTTCAAGTTGGAGACTCTTTGGTCTTCAAATACAACAAAGACT 199
|| ||||| ||| |||||||||||| | |||||||||||||||||||||||||||||| |
Sbjct 125 GGTCATCTTCAAAAACTTTTCAAGTCGAAGACTCTTTGGTCTTCAAATACAACAAAGATT 184
Query 200 TCCACGACGTCACCGAAGTCACTCACAATGATTACGAGATGTGTGAACCGTCCAAACCGC 259
||||||||||||| ||||||||||||||||||| | || |||||||||| || |||||||
Sbjct 185 TCCACGACGTCACTGAAGTCACTCACAATGATTTCAAGTTGTGTGAACCATCTAAACCGC 244
Query 260 TAGCAAGATACGAGACCGGGTCTGATATCGTCATTCTAACCAAACCGGGACTCCAACACT 319
|| | |||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 245 TAACGAGATACGAGACCGGGTCTGACACCATCATTCTAACCAAACCGGGACTCCAACACT 304
Query 320 TCATATGCGGATTTCCTGGTCACTGTGACATGGGACAAAAGCTTCAAATCCATGTATTAC 379
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 305 TCATATGCGGATTTCCTGGTCACTGCGACATGGGCCAAAAGCTTCAAATCCATGTATTAC 364
Query 380 CAGCCTCATTGGGACCTGTCGCTGCTCCGGTTCCTGGACCCGTCCGACCACCAAGCTCTT 439
||||||| ||||||||||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct 365 CAGCCTCGTTGGGACCTGTCGCTGCTCCGGTTCCTAGACCTGTCCGATCACCAAGCTCTT 424
Query 440 TTTCGTCTCCTTCACAGTCTCCGTTGGCTGAGTCACCGGTTAATCATGCTCCAGTACAGT 499
||||||||||||||| ||||||||||||| | | | || | | | | |||
Sbjct 425 TTTCGTCTCCTTCACCGTCTCCGTTGGCT----C-C-----A--CA-G-T--A-T-CAG- 465
Query 500 ATCAGATGGGACCATCACCAGCTCCACATAGTGCAGCTTCAAACTCTAATGTTTGGATTG 559
|| | || ||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 466 AT--G--GG-ACCATCACCAGCTCCACTTAGCGCAGCTTCAAACTCTAATGTTTGGATTG 520
Query 560 GACTCTGCTTCCTTCCTTTACTTT--CTTTGCTCATCTTA 597
||||||||||| |||||||||||| |||| ||||||||
Sbjct 521 GACTCTGCTTCATTCCTTTACTTTTACTTT--TCATCTTA 558
> Ahg900904 jgi|Araly1|900904|Al_scaffold_0004_1554
Length=489
Score = 630 bits (341), Expect = 3e-180
Identities = 442/491 (90%), Gaps = 5/491 (1%)
Strand=Plus/Plus
Query 114 GATTATGAGCGTCAACTACGAGACATGGGCATCTACAATAACTTTTCAAGTTGGAGACTC 173
||| || |||||||| ||||||| |||||| ||| ||| ||||||||| || ||||||||
Sbjct 3 GATGATAAGCGTCAATTACGAGAGATGGGCCTCTTCAAGAACTTTTCATGTCGGAGACTC 62
Query 174 TTTGGTCTTCAAATACAACAAAGACTTCCACGACGTCACCGAAGTCACTCACAATGATTA 233
|||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 63 TTTGGTCTTCAAATACAACAAAGATTTTCACGACGTCACTGAAGTCACTCACAATGATTT 122
Query 234 CGAGATGTGTGAACCGTCCAAACCGCTAGCAAGATACGAGACCGGGTCTGATATCGTCAT 293
| || ||||||||||||| ||||||||| | |||||||||||||| ||||||| ||||||
Sbjct 123 CAAGCTGTGTGAACCGTCTAAACCGCTAACGAGATACGAGACCGGATCTGATACCGTCAT 182
Query 294 TCTAACCAAACCGGGACTCCAACACTTCATATGCGGATTTCCTGGTCACTGTGACATGGG 353
|||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 183 TCTAACCAAACCAGGACTCCAACACTTCATATGCGGATTTCCAAGTCACTGCGACATGGG 242
Query 354 ACAAAAGCTTCAAATCCATGTATTACCAGCCTCATTGGGACCTGTCGCTGCTCCGGTTCC 413
||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 243 ACAAAAGCTTCAAATCCATGTATTACCGGCCTCTTTGGGACATGTCGCTGCTCCGGTTCC 302
Query 414 TGGACCCGTCCGACCACCAAGCTCTTTTTCGTCTCCTTCACAGTCTCCGTTGGCTGAGTC 473
||||||||||||| ||| ||||||||| |||||||||||| ||||| |||| |||| ||
Sbjct 303 TGGACCCGTCCGATCACTAAGCTCTTTGACGTCTCCTTCACCGTCTCGGTTGACTGATTC 362
Query 474 ACCGGTTAATCATGCTCCAGTACAGTATCAGATGGGACCATCACCAGCTCCACATAGTGC 533
|||||||||| ||| |||| ||||||||||||||||||||||||||||||| ||| |
Sbjct 363 ACCGGTTAATAATGTTCCA---CAGTATCAGATGGGACCATCACCAGCTCCACTTAGCGT 419
Query 534 AGCTTCAAACTCTAATGTTTGGATTGGACTCTGCTTCCTTCCTTTACTTTCT-TTGCTCA 592
||||||| |||||| ||||||||| ||||||||||||||||||||||||||| || |||
Sbjct 420 AGCTTCATACTCTAGTGTTTGGATCGGACTCTGCTTCCTTCCTTTACTTTCTCTTT-TCA 478
Query 593 TCTTAGTTTGA 603
|||||||||||
Sbjct 479 TCTTAGTTTGA 489
> Ahg933650 jgi|Araly1|933650|scaffold_401638.1
Length=603
Score = 387 bits (209), Expect = 7e-107
Identities = 367/441 (83%), Gaps = 19/441 (4%)
Strand=Plus/Plus
Query 1 ATGGCTTTGATCAA-AAGCAACG-C--CTTCTTT-ACTTCTTTGCTT-ATTCTTGTAGCA 54
||||||||||| || || ||||| | ||| ||| ||||| ||| || ||||||||| |
Sbjct 22 ATGGCTTTGATTAAGAA-CAACGTCGTCTT-TTTCACTTCATTG-TTGATTCTTGTAACT 78
Query 55 CTTTTTGGAATTTCCGTTGGAGGAACCGTTCACAAAGTTGGTGACTCCGACGGATGGACG 114
||||| || || ||||||||||||||||||||||||| |||||| | | || ||||||
Sbjct 79 CTTTTAGGTGTTACCGTTGGAGGAACCGTTCACAAAGTCGGTGACACTAAAGGGTGGACG 138
Query 115 ATTATGAGCGTCAACTACGA-GACATGGGCATCTACAATAACTTTTCAAGTTGGAGACTC 173
|| | | ||| | ||||| || ||||| ||| ||| |||||||||||| ||||| ||
Sbjct 139 ATGGCGGGAGTCGATTACGAGGA-TTGGGCTTCTTCAAAAACTTTTCAAGTGGGAGATTC 197
Query 174 TTTGGTCTTCAAATACAACAAAGACTTCCACGACGTCACCGAAGTCACTCACAATGATTA 233
|||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 198 TTTGGTCTTCGCATACAACAAAGATTTCCACGACGTCACGGAAGTCACTCACAATGATTT 257
Query 234 CGAGATGTGTGAACCGTCCAAACCGC-T-AGCAAGATACGAGACCGGGTCTGATATC-GT 290
|||| |||||||| |||| ||||| | | || |||||| | |||||||| || || |
Sbjct 258 CGAGCTGTGTGAATCGTCTAAACCACTTAAG--AGATACAAAACCGGGTCCGA-CTCAAT 314
Query 291 CATTCTAACCAAACCGGGACTCCAACACTTCATATGCGGATTTCCTGGTCACTGTGACAT 350
|| ||||||||||||||||||||||||||||||||||||| |||||||||| || ||||
Sbjct 315 CAGTCTAACCAAACCGGGACTCCAACACTTCATATGCGGAGTTCCTGGTCATTGCAACAT 374
Query 351 -GGGACAAAAGCTTCAAATCCATGTATTACCAGCCTCATTGGGACCTGTCGCTGCTCCGG 409
||| |||||||||| ||||||||| ||||| || || ||||| || |||||||||||||
Sbjct 375 AGGG-CAAAAGCTTCTAATCCATGTCTTACCGGCTTCGTTGGGTCCCGTCGCTGCTCCGG 433
Query 410 TTCCTGGACCCGTCCGACCAC 430
|||||||||| |||||| |||
Sbjct 434 TTCCTGGACCTGTCCGATCAC 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22092086031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5