BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31081.1 Length=554 Score E Sequences producing significant alignments: (Bits) Value Ahg482033 jgi|Araly1|482033|fgenesh2_kg.4__1093__AT2G31081.1 551 2e-156 > Ahg482033 jgi|Araly1|482033|fgenesh2_kg.4__1093__AT2G31081.1 Length=505 Score = 551 bits (298), Expect = 2e-156 Identities = 466/539 (86%), Gaps = 44/539 (8%) Strand=Plus/Plus Query 1 CCAAAGACTAGCTTGAAGAGGGATTAGTA-GGCAATATTAATAACAATTAACTGAATATG 59 ||||||||||||||||||| ||||||||| |||||| ||||||||||||| ||||||| Sbjct 1 CCAAAGACTAGCTTGAAGA-GGATTAGTACAACAATATAAATAACAATTAACAGAATATG 59 Query 60 GCAAGTTTCAAGTTATGGGTTTGCCTTATATTGCTTCTACTCGAGTTCTCGGTGCATCAA 119 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 60 GCAAGTTTCAAGTTATGGGTTTGCCTTATATTGCTTCTACTCGAGATCTCGGTGCATCAA 119 Query 120 TGCCGACCACTGGTTGCGGAAGAGAGCCCTTCAGATTCAGGTAACATAAGAAAGATTATG 179 |||||||||||||| ||||||||||||| || |||||||| |||||||||||||||||| Sbjct 120 TGCCGACCACTGGTCGCGGAAGAGAGCCGGTCTGATTCAGGGAACATAAGAAAGATTATG 179 Query 180 AGGGAACTTCTCAAAAGATCAGAAGAGCTGAAGGTAAGATCGAAAGACGGCCAAACGGTT 239 ||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| Sbjct 180 AGGGAACTTCTCAAAAGATCAGAAGAGCTGAAGGTAAGATCCAAAGGCGGCGAAACGGTT 239 Query 240 CTAGGC---ACCCTTGATTCAAAGCGGCTCAGCCCTGGTGGGCCGGACCCTAGACATCAC 296 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CTAGGCAATACCCTTGATTCAAAGCGGCTCAGCCCTGGTGGGCCGGACCCTAGACATCAC 299 Query 297 TAAAATGATGAGTAGTTTTATAACCTTTTGGTGAGGTATTCAAACTTGTAATATCAGCTG 356 | ||| || || | | | | | ||| | || | ||| | | || | || Sbjct 300 T-AAA-GA-GA-T-G---TGT-A--GTTT--T----TA-T--AAC--CT--T-TC-GGTG 333 Query 357 AGGGCATTGCATAAGC--GTTATTGGTGTAACTCTAAGGCTACCATCTTGTTAACATTGA 414 | || |||| | || | || |||||||||||||||||| ||||||||| | |||||||| Sbjct 334 A-GGTATTG-A-AA-CTTGTAATTGGTGTAACTCTAAGGTTACCATCTTATCAACATTGA 389 Query 415 GGTGAAATTAAATCTTGAAGTATGTTCATCTAAGGTGAAGCGTACTAGATAATGTGCTTG 474 || ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 390 -GTCAAATT-AATCTTGAAGTATGTTCATCTAAAGTGAAGCGTACTAGATAATGTGCTTG 447 Query 475 TTTGTATT-AA--GTTT-TCTTTTGTGCTTCCCAAAATTATGAGGAATTGTCATTTATC 529 ||| |||| || | || ||||||||||||| ||||||||||| ||||| |||||||| Sbjct 448 TTTTTATTTAATCGGTTCTCTTTTGTGCTTCT-AAAATTATGAGAAATTGGCATTTATC 505 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20222462170 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5