BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G31081.1

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482033 jgi|Araly1|482033|fgenesh2_kg.4__1093__AT2G31081.1         551    2e-156


> Ahg482033 jgi|Araly1|482033|fgenesh2_kg.4__1093__AT2G31081.1
Length=505

 Score =  551 bits (298),  Expect = 2e-156
 Identities = 466/539 (86%), Gaps = 44/539 (8%)
 Strand=Plus/Plus

Query  1    CCAAAGACTAGCTTGAAGAGGGATTAGTA-GGCAATATTAATAACAATTAACTGAATATG  59
            ||||||||||||||||||| |||||||||   |||||| ||||||||||||| |||||||
Sbjct  1    CCAAAGACTAGCTTGAAGA-GGATTAGTACAACAATATAAATAACAATTAACAGAATATG  59

Query  60   GCAAGTTTCAAGTTATGGGTTTGCCTTATATTGCTTCTACTCGAGTTCTCGGTGCATCAA  119
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  60   GCAAGTTTCAAGTTATGGGTTTGCCTTATATTGCTTCTACTCGAGATCTCGGTGCATCAA  119

Query  120  TGCCGACCACTGGTTGCGGAAGAGAGCCCTTCAGATTCAGGTAACATAAGAAAGATTATG  179
            |||||||||||||| |||||||||||||  || |||||||| ||||||||||||||||||
Sbjct  120  TGCCGACCACTGGTCGCGGAAGAGAGCCGGTCTGATTCAGGGAACATAAGAAAGATTATG  179

Query  180  AGGGAACTTCTCAAAAGATCAGAAGAGCTGAAGGTAAGATCGAAAGACGGCCAAACGGTT  239
            ||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||
Sbjct  180  AGGGAACTTCTCAAAAGATCAGAAGAGCTGAAGGTAAGATCCAAAGGCGGCGAAACGGTT  239

Query  240  CTAGGC---ACCCTTGATTCAAAGCGGCTCAGCCCTGGTGGGCCGGACCCTAGACATCAC  296
            ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  CTAGGCAATACCCTTGATTCAAAGCGGCTCAGCCCTGGTGGGCCGGACCCTAGACATCAC  299

Query  297  TAAAATGATGAGTAGTTTTATAACCTTTTGGTGAGGTATTCAAACTTGTAATATCAGCTG  356
            | ||| || || | |   | | |   |||  |    || |  |||   |  | || | ||
Sbjct  300  T-AAA-GA-GA-T-G---TGT-A--GTTT--T----TA-T--AAC--CT--T-TC-GGTG  333

Query  357  AGGGCATTGCATAAGC--GTTATTGGTGTAACTCTAAGGCTACCATCTTGTTAACATTGA  414
            | || |||| | || |  || |||||||||||||||||| ||||||||| | ||||||||
Sbjct  334  A-GGTATTG-A-AA-CTTGTAATTGGTGTAACTCTAAGGTTACCATCTTATCAACATTGA  389

Query  415  GGTGAAATTAAATCTTGAAGTATGTTCATCTAAGGTGAAGCGTACTAGATAATGTGCTTG  474
             || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  390  -GTCAAATT-AATCTTGAAGTATGTTCATCTAAAGTGAAGCGTACTAGATAATGTGCTTG  447

Query  475  TTTGTATT-AA--GTTT-TCTTTTGTGCTTCCCAAAATTATGAGGAATTGTCATTTATC  529
            ||| |||| ||  | || |||||||||||||  ||||||||||| ||||| ||||||||
Sbjct  448  TTTTTATTTAATCGGTTCTCTTTTGTGCTTCT-AAAATTATGAGAAATTGGCATTTATC  505



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20222462170


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5