BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G31082.1

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482034 jgi|Araly1|482034|fgenesh2_kg.4__1094__AT2G31082.1         409    6e-114
  Ahg497427 jgi|Araly1|497427|fgenesh2_kg.426__1__AT2G31082.1          309    6e-84 


> Ahg482034 jgi|Araly1|482034|fgenesh2_kg.4__1094__AT2G31082.1
Length=251

 Score =  409 bits (221),  Expect = 6e-114
 Identities = 241/251 (96%), Gaps = 0/251 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTTCTAAAGCGTTATTGTTATTTGTTATGCTCACCTTTCTATTGGTAATTGAAATG  60
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct  1    ATGGCTTCTAAAGCGTTATTGTTATTTGTTATGCTCACATTTCTATTGGTAATTGCAATG  60

Query  61   GAAGGGAGGATACTTCGGGTGAATTCAAAGACTAAAGATGGTGAGAGCAACGATCTTTTG  120
            ||||| ||||||||| |||| |||||||||| | ||||||||||||||||||||||||||
Sbjct  61   GAAGGAAGGATACTTGGGGTTAATTCAAAGAGTGAAGATGGTGAGAGCAACGATCTTTTG  120

Query  121  AAACGGTTAGGTTACAATGTTTCTGAACTAAAGCGTATTGGCCGAGAGCTTTCCGTCCAA  180
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CAACGGTTAGGTTACAATGTTTCTGAACTAAAGCGTATTGGCCGAGAGCTTTCCGTCCAA  180

Query  181  AACGAAGTAGATAGGTTTTCTCCAGGAGGGCCTGACCCTCAACATCACTCTTATCCTCTG  240
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct  181  AACGAAGTAGATAGGTTTTCACCAGGAGGGCCTGACCCTCAACATCACTCTTATCCTTTG  240

Query  241  TCTTCAAAACC  251
            |||||||||||
Sbjct  241  TCTTCAAAACC  251


> Ahg497427 jgi|Araly1|497427|fgenesh2_kg.426__1__AT2G31082.1
Length=194

 Score =  309 bits (167),  Expect = 6e-84
 Identities = 185/194 (95%), Gaps = 0/194 (0%)
 Strand=Plus/Plus

Query  58   ATGGAAGGGAGGATACTTCGGGTGAATTCAAAGACTAAAGATGGTGAGAGCAACGATCTT  117
            |||||||| ||||||||| |||| |||||||||| | |||||||||||||||||||||||
Sbjct  1    ATGGAAGGAAGGATACTTGGGGTTAATTCAAAGAGTGAAGATGGTGAGAGCAACGATCTT  60

Query  118  TTGAAACGGTTAGGTTACAATGTTTCTGAACTAAAGCGTATTGGCCGAGAGCTTTCCGTC  177
            ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   TTGCAACGGTTAGGTTACAATGTCTCTGAACTAAAGCGTATTGGCCGAGAGCTTTCCGTC  120

Query  178  CAAAACGAAGTAGATAGGTTTTCTCCAGGAGGGCCTGACCCTCAACATCACTCTTATCCT  237
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  121  CAAAACGAAGTAGATAGGTTTTCACCAGGAGGGCCTGACCCTCAACATCACTCTTATCCT  180

Query  238  CTGTCTTCAAAACC  251
             |||||||||||||
Sbjct  181  TTGTCTTCAAAACC  194



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9088806118


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5