BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31083.1 Length=547 Score E Sequences producing significant alignments: (Bits) Value Ahg482035 jgi|Araly1|482035|fgenesh2_kg.4__1095__AT2G31083.1 702 0.0 Ahg482036 jgi|Araly1|482036|fgenesh2_kg.4__1096__AT2G31085.1 342 1e-93 > Ahg482035 jgi|Araly1|482035|fgenesh2_kg.4__1095__AT2G31083.1 Length=539 Score = 702 bits (380), Expect = 0.0 Identities = 499/553 (90%), Gaps = 21/553 (4%) Strand=Plus/Plus Query 1 ATCATACTCTCTCAATATCATCTCATTTTGCATCTCTCTCTCAACTCCCACCCCTCCAAA 60 ||||||||||||| |||| |||||||||||||||||||||| ||| |||||||||| ||| Sbjct 1 ATCATACTCTCTCGATATAATCTCATTTTGCATCTCTCTCTTAACCCCCACCCCTCAAAA 60 Query 61 TTCACCTTTAATTTCTTCCTCTATTATGGCGACTTTGATCCTCAAGCAAACTCTAATCAT 120 ||||| |||||||||||| |||||||||||||||||| ||||| |||| ||||| Sbjct 61 GTCACC-----TTTCTTCCTCTACTATGGCGACTTTGATCCTTAAGCATTCTCTGATCAT 115 Query 121 ACTCCTAATCATATTTTCATTACAAACCTTAAGTTCTCAAGCTCGAATCCTCCGTTCATA 180 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 116 ACTCCTAATCATATTTTCATCACAAACCTTAAGATCTCAAGCTCGAATCCTCCGTTCATA 175 Query 181 TCGTGCCGTGTCCATGGGCAATATGGATAGTCAGGTTCTCCTACATGAACTCGGGTTTGA 240 ||||| |||||||||| ||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 176 TCGTGTCGTGTCCATGAGCAATGTGGATAGTCAGGTTCTCCTACGTGAACTCGGGTTTGA 235 Query 241 TCTCTCTAAGTTCAAAGGTCATAACGAGAGGCGATTTTTAGTGAGTTCCGACAGGGTTTC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 TCTCTCTAAGTTCAAAGGTCATAACGAGAGGCGATTTTTAGTGAGTTCCGACAGGGTTTC 295 Query 301 ACCCGGAGGTCCCGATCCACAACACCATTGAATGATCGAT-ACCTAAATAAATACTTTAC 359 ||| |||||||||||||| |||||||||| |||| ||| | || || ||||||||||||| Sbjct 296 ACCGGGAGGTCCCGATCCGCAACACCATTAAATGGTCG-TCACATATATAAATACTTTAC 354 Query 360 CGAAGATCCAAGCACAAATAATGTGACTGATTCATC-ATCCATCTATGCAAGTCATCATA 418 | |||||||||||||||||||||||| || ||| ||| ||| ||||||||||| || Sbjct 355 CAAAGATCCAAGCACAAATAATGTGAG-GACGGATCCATC-ATCCATGCAAGTCAT-AT- 410 Query 419 TGATTATCGCTCTTTCTATGTTTTTCTTTCCTCTCTTTGTTTTTCATAAAACCTTAC--- 475 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 411 -GATTATCGCTATTTCTATGTTTT-CTTTCCTCTCTTTGTTTTTCATAAAACCTTACTAT 468 Query 476 --GTACAACTTTGTTGTATCAAGGTTTTGGTATCCTTGTACCACACATTACCTTAATACA 533 |||||| |||||||||||||||||||||||| |||||||||| | ||||||| ||||| Sbjct 469 ACGTACAATTTTGTTGTATCAAGGTTTTGGTATTCTTGTACCAC-C-TTACCTTGATACA 526 Query 534 CCAAGCTTTTTCT 546 ||||||||||||| Sbjct 527 CCAAGCTTTTTCT 539 > Ahg482036 jgi|Araly1|482036|fgenesh2_kg.4__1096__AT2G31085.1 Length=409 Score = 342 bits (185), Expect = 1e-93 Identities = 341/412 (83%), Gaps = 28/412 (7%) Strand=Plus/Plus Query 1 ATCATACTCTCTCA-ATATCATCTCATTT-TGCATCTCTCTCTCAA-CTC--C-CACCCC 54 |||||||||||||| | ||||||| ||| | | |||||||||||| ||| | | ||| Sbjct 1 ATCATACTCTCTCAGCT-TCATCTC-TTTCT-C-TCTCTCTCTCAATCTCTGCAAATCCC 56 Query 55 TCCAAATTCACCTTTAAT-TTC---TTC-CTCTATTATGGCGACTTTGATCCTCAAGCAA 109 |||| |||| ||| | ||| ||| | || ||||||||| || |||||| |||||| Sbjct 57 -ACAAA-TCACTTTTCTTCTTCTTATTCAC-CTTTTATGGCGAATTCGATCCTTAAGCAA 113 Query 110 ACTCTAATCATACTCCTAATCATATTTTCATTACAAACCTTAAGTTCTCAAGCTCGAATC 169 |||||||||||||||||||||||||||||| || || ||| |||||||||||||||||| Sbjct 114 TCTCTAATCATACTCCTAATCATATTTTCATCACCAATCTTTAGTTCTCAAGCTCGAATC 173 Query 170 CTCCGTTCATATCGTGCCGTGTCCATGGGCAATATGGATAGTCAGGTTCTCCTACATGAA 229 |||||| |||||| || | || ||||||||||||||||||||||||| ||| |||| Sbjct 174 CTCCGTACATATCACCCCACGGCCGTGGGCAATATGGATAGTCAGGTTCTTTTACGTGAA 233 Query 230 CTCGGGTTTGATCTCTCTAAGTTCAAAGGTCATAACGAGAGGCGATTTTTAGTG-AGTTC 288 |||||| ||||||||||||||||||||||| ||| ||| ||||| ||||||||| | ||| Sbjct 234 CTCGGGATTGATCTCTCTAAGTTCAAAGGTAATAGCGAAAGGCGGTTTTTAGTGGA-TTC 292 Query 289 CGACAGGGTTTCACCCGGAGGTCCC-GATCCACAACACCATTGAATGATCGATACCTAAA 347 ||| ||||||||||| ||||| ||| || ||||||||||||| | ||||| ||| | | Sbjct 293 CGAAAGGGTTTCACCAGGAGG-CCCTGACCCACAACACCATT-ACTGATCTTTACAGATA 350 Query 348 TAAATACTTTACCG-A-A--GATCCAAGCACAAATAAT-GTGACTGATTCAT 394 || ||||||||||| | | |||||||||||||||||| ||||||||| ||| Sbjct 351 TATATACTTTACCGGAGATCGATCCAAGCACAAATAATTGTGACTGATCCAT 402 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19955373047 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5