BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31083.1
Length=547
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482035 jgi|Araly1|482035|fgenesh2_kg.4__1095__AT2G31083.1 702 0.0
Ahg482036 jgi|Araly1|482036|fgenesh2_kg.4__1096__AT2G31085.1 342 1e-93
> Ahg482035 jgi|Araly1|482035|fgenesh2_kg.4__1095__AT2G31083.1
Length=539
Score = 702 bits (380), Expect = 0.0
Identities = 499/553 (90%), Gaps = 21/553 (4%)
Strand=Plus/Plus
Query 1 ATCATACTCTCTCAATATCATCTCATTTTGCATCTCTCTCTCAACTCCCACCCCTCCAAA 60
||||||||||||| |||| |||||||||||||||||||||| ||| |||||||||| |||
Sbjct 1 ATCATACTCTCTCGATATAATCTCATTTTGCATCTCTCTCTTAACCCCCACCCCTCAAAA 60
Query 61 TTCACCTTTAATTTCTTCCTCTATTATGGCGACTTTGATCCTCAAGCAAACTCTAATCAT 120
||||| |||||||||||| |||||||||||||||||| ||||| |||| |||||
Sbjct 61 GTCACC-----TTTCTTCCTCTACTATGGCGACTTTGATCCTTAAGCATTCTCTGATCAT 115
Query 121 ACTCCTAATCATATTTTCATTACAAACCTTAAGTTCTCAAGCTCGAATCCTCCGTTCATA 180
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 116 ACTCCTAATCATATTTTCATCACAAACCTTAAGATCTCAAGCTCGAATCCTCCGTTCATA 175
Query 181 TCGTGCCGTGTCCATGGGCAATATGGATAGTCAGGTTCTCCTACATGAACTCGGGTTTGA 240
||||| |||||||||| ||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 176 TCGTGTCGTGTCCATGAGCAATGTGGATAGTCAGGTTCTCCTACGTGAACTCGGGTTTGA 235
Query 241 TCTCTCTAAGTTCAAAGGTCATAACGAGAGGCGATTTTTAGTGAGTTCCGACAGGGTTTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TCTCTCTAAGTTCAAAGGTCATAACGAGAGGCGATTTTTAGTGAGTTCCGACAGGGTTTC 295
Query 301 ACCCGGAGGTCCCGATCCACAACACCATTGAATGATCGAT-ACCTAAATAAATACTTTAC 359
||| |||||||||||||| |||||||||| |||| ||| | || || |||||||||||||
Sbjct 296 ACCGGGAGGTCCCGATCCGCAACACCATTAAATGGTCG-TCACATATATAAATACTTTAC 354
Query 360 CGAAGATCCAAGCACAAATAATGTGACTGATTCATC-ATCCATCTATGCAAGTCATCATA 418
| |||||||||||||||||||||||| || ||| ||| ||| ||||||||||| ||
Sbjct 355 CAAAGATCCAAGCACAAATAATGTGAG-GACGGATCCATC-ATCCATGCAAGTCAT-AT- 410
Query 419 TGATTATCGCTCTTTCTATGTTTTTCTTTCCTCTCTTTGTTTTTCATAAAACCTTAC--- 475
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 411 -GATTATCGCTATTTCTATGTTTT-CTTTCCTCTCTTTGTTTTTCATAAAACCTTACTAT 468
Query 476 --GTACAACTTTGTTGTATCAAGGTTTTGGTATCCTTGTACCACACATTACCTTAATACA 533
|||||| |||||||||||||||||||||||| |||||||||| | ||||||| |||||
Sbjct 469 ACGTACAATTTTGTTGTATCAAGGTTTTGGTATTCTTGTACCAC-C-TTACCTTGATACA 526
Query 534 CCAAGCTTTTTCT 546
|||||||||||||
Sbjct 527 CCAAGCTTTTTCT 539
> Ahg482036 jgi|Araly1|482036|fgenesh2_kg.4__1096__AT2G31085.1
Length=409
Score = 342 bits (185), Expect = 1e-93
Identities = 341/412 (83%), Gaps = 28/412 (7%)
Strand=Plus/Plus
Query 1 ATCATACTCTCTCA-ATATCATCTCATTT-TGCATCTCTCTCTCAA-CTC--C-CACCCC 54
|||||||||||||| | ||||||| ||| | | |||||||||||| ||| | | |||
Sbjct 1 ATCATACTCTCTCAGCT-TCATCTC-TTTCT-C-TCTCTCTCTCAATCTCTGCAAATCCC 56
Query 55 TCCAAATTCACCTTTAAT-TTC---TTC-CTCTATTATGGCGACTTTGATCCTCAAGCAA 109
|||| |||| ||| | ||| ||| | || ||||||||| || |||||| ||||||
Sbjct 57 -ACAAA-TCACTTTTCTTCTTCTTATTCAC-CTTTTATGGCGAATTCGATCCTTAAGCAA 113
Query 110 ACTCTAATCATACTCCTAATCATATTTTCATTACAAACCTTAAGTTCTCAAGCTCGAATC 169
|||||||||||||||||||||||||||||| || || ||| ||||||||||||||||||
Sbjct 114 TCTCTAATCATACTCCTAATCATATTTTCATCACCAATCTTTAGTTCTCAAGCTCGAATC 173
Query 170 CTCCGTTCATATCGTGCCGTGTCCATGGGCAATATGGATAGTCAGGTTCTCCTACATGAA 229
|||||| |||||| || | || ||||||||||||||||||||||||| ||| ||||
Sbjct 174 CTCCGTACATATCACCCCACGGCCGTGGGCAATATGGATAGTCAGGTTCTTTTACGTGAA 233
Query 230 CTCGGGTTTGATCTCTCTAAGTTCAAAGGTCATAACGAGAGGCGATTTTTAGTG-AGTTC 288
|||||| ||||||||||||||||||||||| ||| ||| ||||| ||||||||| | |||
Sbjct 234 CTCGGGATTGATCTCTCTAAGTTCAAAGGTAATAGCGAAAGGCGGTTTTTAGTGGA-TTC 292
Query 289 CGACAGGGTTTCACCCGGAGGTCCC-GATCCACAACACCATTGAATGATCGATACCTAAA 347
||| ||||||||||| ||||| ||| || ||||||||||||| | ||||| ||| | |
Sbjct 293 CGAAAGGGTTTCACCAGGAGG-CCCTGACCCACAACACCATT-ACTGATCTTTACAGATA 350
Query 348 TAAATACTTTACCG-A-A--GATCCAAGCACAAATAAT-GTGACTGATTCAT 394
|| ||||||||||| | | |||||||||||||||||| ||||||||| |||
Sbjct 351 TATATACTTTACCGGAGATCGATCCAAGCACAAATAATTGTGACTGATCCAT 402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19955373047
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5