BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31085.1
Length=529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482036 jgi|Araly1|482036|fgenesh2_kg.4__1096__AT2G31085.1 514 3e-145
Ahg482035 jgi|Araly1|482035|fgenesh2_kg.4__1095__AT2G31083.1 340 5e-93
> Ahg482036 jgi|Araly1|482036|fgenesh2_kg.4__1096__AT2G31085.1
Length=409
Score = 514 bits (278), Expect = 3e-145
Identities = 371/414 (90%), Gaps = 13/414 (3%)
Strand=Plus/Plus
Query 1 ATCATActctctcaacttca--tc--tctctctctctctcaatctct-TAAGATCCCACA 55
|||||||||||||| ||||| || ||||||||||||||||||||| || ||||||||
Sbjct 1 ATCATACTCTCTCAGCTTCATCTCTTTCTCTCTCTCTCTCAATCTCTGCAA-ATCCCACA 59
Query 56 AGTCACTTTTCTTCTTCTTAATCACCTTTAATGGCGAATTTGATCCTTAAGCAATCTCTA 115
| |||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||
Sbjct 60 AATCACTTTTCTTCTTCTTATTCACCTTTTATGGCGAATTCGATCCTTAAGCAATCTCTA 119
Query 116 ATCATACTCCTAATCATATATTCAACACCAATCTTGAGTTCTCAAGCTCGAATCCTCCGT 175
||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 120 ATCATACTCCTAATCATATTTTCATCACCAATCTTTAGTTCTCAAGCTCGAATCCTCCGT 179
Query 176 ACATATCGCCCCACAACCATGGGCGATATGGATAGTCAGGTTCTCCTACGTGAACTCGGG 235
||||||| |||||| || ||||| ||||||||||||||||||| ||||||||||||||
Sbjct 180 ACATATCACCCCACGGCCGTGGGCAATATGGATAGTCAGGTTCTTTTACGTGAACTCGGG 239
Query 236 ATTGATCTCTCTAAGTTCAAAGGTCA-AGACGAGAGACGGTTTTTAGTGGATTCCGAAAG 294
|||||||||||||||||||||||| | || ||| || |||||||||||||||||||||||
Sbjct 240 ATTGATCTCTCTAAGTTCAAAGGTAATAG-CGAAAGGCGGTTTTTAGTGGATTCCGAAAG 298
Query 295 GGTTTCTCCGGGGGGTCCTGATCCACAACACCATTGACTGATCTTTACCGATATATATAT 354
|||||| || || || ||||| ||||||||||||| |||||||||||| ||||||||||
Sbjct 299 GGTTTCACCAGGAGGCCCTGACCCACAACACCATT-ACTGATCTTTACAGATATATATA- 356
Query 355 ACTTTACCGAAGATCGAAGCA--CACATATAACTGTGACTGATCCATGCAAGTC 406
|||||||| ||||||| || |||| |||| |||||||||||||||||||||
Sbjct 357 -CTTTACCGGAGATCGATCCAAGCACAAATAATTGTGACTGATCCATGCAAGTC 409
> Ahg482035 jgi|Araly1|482035|fgenesh2_kg.4__1095__AT2G31083.1
Length=539
Score = 340 bits (184), Expect = 5e-93
Identities = 377/465 (81%), Gaps = 34/465 (7%)
Strand=Plus/Plus
Query 86 ATGGCGAATTTGATCCTTAAGCAATCTCTAATCATACTCCTAATCATATATTCAACACCA 145
||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||| ||| |
Sbjct 81 ATGGCGACTTTGATCCTTAAGCATTCTCTGATCATACTCCTAATCATATTTTCATCACAA 140
Query 146 ATCTTGAGTTCTCAAGCTCGAATCCTCCGTACATATCGCCCCACAACCATGGGCGATATG 205
| ||| || ||||||||||||||||||||| ||||||| | ||||| || || ||
Sbjct 141 ACCTTAAGATCTCAAGCTCGAATCCTCCGTTCATATCGTGTCGTGTCCATGAGCAATGTG 200
Query 206 GATAGTCAGGTTCTCCTACGTGAACTCGGGATTGATCTCTCTAAGTTCAAAGGTCA-AGA 264
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 201 GATAGTCAGGTTCTCCTACGTGAACTCGGGTTTGATCTCTCTAAGTTCAAAGGTCATA-A 259
Query 265 CGAGAGACGGTTTTTAGTG-GATTCCGAAAGGGTTTCTCCGGGGGGTCCTGATCCACAAC 323
|||||| || ||||||||| | |||||| |||||||| ||||| ||||| ||||| ||||
Sbjct 260 CGAGAGGCGATTTTTAGTGAG-TTCCGACAGGGTTTCACCGGGAGGTCCCGATCCGCAAC 318
Query 324 ACCATTGACTGATCTTTACCGATATATATATACTTTACCGAAGATCGAAGCACACATA-T 382
|||||| | || || | || ||||||| |||||||||| |||||| ||||||| ||| |
Sbjct 319 ACCATTAAATGGTCGTCAC--ATATATAAATACTTTACCAAAGATCCAAGCACAAATAAT 376
Query 383 ---A--ACTG-TG-ACTGATCCATGCAAGTCAATTTAAATATCG-TCATTTAC-ATG--- 430
| || | | | | |||||||||||||| | | | ||||| | |||| | |||
Sbjct 377 GTGAGGACGGATCCA-TCATCCATGCAAGTCA-TATGATTATCGCT-ATTT-CTATGTTT 432
Query 431 -CTTT--TCT-TTTCTTTTTCATAAATC-TTCCC-TAC--AC--TTTTGTTGTATCAAGA 480
|||| ||| ||| ||||||||||| | || | ||| || |||||||||||||||
Sbjct 433 TCTTTCCTCTCTTTGTTTTTCATAAAACCTTACTATACGTACAATTTTGTTGTATCAAGG 492
Query 481 TTTTGGTATTCTTGTACCTTCCTTATCTTTAAACATCAAGGTTTT 525
|||||||||||||||||| ||||| ||| | ||| |||| ||||
Sbjct 493 TTTTGGTATTCTTGTACCA-CCTTACCTTGATACACCAAGCTTTT 536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19268572445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5