BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31085.1 Length=529 Score E Sequences producing significant alignments: (Bits) Value Ahg482036 jgi|Araly1|482036|fgenesh2_kg.4__1096__AT2G31085.1 514 3e-145 Ahg482035 jgi|Araly1|482035|fgenesh2_kg.4__1095__AT2G31083.1 340 5e-93 > Ahg482036 jgi|Araly1|482036|fgenesh2_kg.4__1096__AT2G31085.1 Length=409 Score = 514 bits (278), Expect = 3e-145 Identities = 371/414 (90%), Gaps = 13/414 (3%) Strand=Plus/Plus Query 1 ATCATActctctcaacttca--tc--tctctctctctctcaatctct-TAAGATCCCACA 55 |||||||||||||| ||||| || ||||||||||||||||||||| || |||||||| Sbjct 1 ATCATACTCTCTCAGCTTCATCTCTTTCTCTCTCTCTCTCAATCTCTGCAA-ATCCCACA 59 Query 56 AGTCACTTTTCTTCTTCTTAATCACCTTTAATGGCGAATTTGATCCTTAAGCAATCTCTA 115 | |||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| Sbjct 60 AATCACTTTTCTTCTTCTTATTCACCTTTTATGGCGAATTCGATCCTTAAGCAATCTCTA 119 Query 116 ATCATACTCCTAATCATATATTCAACACCAATCTTGAGTTCTCAAGCTCGAATCCTCCGT 175 ||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||| Sbjct 120 ATCATACTCCTAATCATATTTTCATCACCAATCTTTAGTTCTCAAGCTCGAATCCTCCGT 179 Query 176 ACATATCGCCCCACAACCATGGGCGATATGGATAGTCAGGTTCTCCTACGTGAACTCGGG 235 ||||||| |||||| || ||||| ||||||||||||||||||| |||||||||||||| Sbjct 180 ACATATCACCCCACGGCCGTGGGCAATATGGATAGTCAGGTTCTTTTACGTGAACTCGGG 239 Query 236 ATTGATCTCTCTAAGTTCAAAGGTCA-AGACGAGAGACGGTTTTTAGTGGATTCCGAAAG 294 |||||||||||||||||||||||| | || ||| || ||||||||||||||||||||||| Sbjct 240 ATTGATCTCTCTAAGTTCAAAGGTAATAG-CGAAAGGCGGTTTTTAGTGGATTCCGAAAG 298 Query 295 GGTTTCTCCGGGGGGTCCTGATCCACAACACCATTGACTGATCTTTACCGATATATATAT 354 |||||| || || || ||||| ||||||||||||| |||||||||||| |||||||||| Sbjct 299 GGTTTCACCAGGAGGCCCTGACCCACAACACCATT-ACTGATCTTTACAGATATATATA- 356 Query 355 ACTTTACCGAAGATCGAAGCA--CACATATAACTGTGACTGATCCATGCAAGTC 406 |||||||| ||||||| || |||| |||| ||||||||||||||||||||| Sbjct 357 -CTTTACCGGAGATCGATCCAAGCACAAATAATTGTGACTGATCCATGCAAGTC 409 > Ahg482035 jgi|Araly1|482035|fgenesh2_kg.4__1095__AT2G31083.1 Length=539 Score = 340 bits (184), Expect = 5e-93 Identities = 377/465 (81%), Gaps = 34/465 (7%) Strand=Plus/Plus Query 86 ATGGCGAATTTGATCCTTAAGCAATCTCTAATCATACTCCTAATCATATATTCAACACCA 145 ||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||| ||| | Sbjct 81 ATGGCGACTTTGATCCTTAAGCATTCTCTGATCATACTCCTAATCATATTTTCATCACAA 140 Query 146 ATCTTGAGTTCTCAAGCTCGAATCCTCCGTACATATCGCCCCACAACCATGGGCGATATG 205 | ||| || ||||||||||||||||||||| ||||||| | ||||| || || || Sbjct 141 ACCTTAAGATCTCAAGCTCGAATCCTCCGTTCATATCGTGTCGTGTCCATGAGCAATGTG 200 Query 206 GATAGTCAGGTTCTCCTACGTGAACTCGGGATTGATCTCTCTAAGTTCAAAGGTCA-AGA 264 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | | Sbjct 201 GATAGTCAGGTTCTCCTACGTGAACTCGGGTTTGATCTCTCTAAGTTCAAAGGTCATA-A 259 Query 265 CGAGAGACGGTTTTTAGTG-GATTCCGAAAGGGTTTCTCCGGGGGGTCCTGATCCACAAC 323 |||||| || ||||||||| | |||||| |||||||| ||||| ||||| ||||| |||| Sbjct 260 CGAGAGGCGATTTTTAGTGAG-TTCCGACAGGGTTTCACCGGGAGGTCCCGATCCGCAAC 318 Query 324 ACCATTGACTGATCTTTACCGATATATATATACTTTACCGAAGATCGAAGCACACATA-T 382 |||||| | || || | || ||||||| |||||||||| |||||| ||||||| ||| | Sbjct 319 ACCATTAAATGGTCGTCAC--ATATATAAATACTTTACCAAAGATCCAAGCACAAATAAT 376 Query 383 ---A--ACTG-TG-ACTGATCCATGCAAGTCAATTTAAATATCG-TCATTTAC-ATG--- 430 | || | | | | |||||||||||||| | | | ||||| | |||| | ||| Sbjct 377 GTGAGGACGGATCCA-TCATCCATGCAAGTCA-TATGATTATCGCT-ATTT-CTATGTTT 432 Query 431 -CTTT--TCT-TTTCTTTTTCATAAATC-TTCCC-TAC--AC--TTTTGTTGTATCAAGA 480 |||| ||| ||| ||||||||||| | || | ||| || ||||||||||||||| Sbjct 433 TCTTTCCTCTCTTTGTTTTTCATAAAACCTTACTATACGTACAATTTTGTTGTATCAAGG 492 Query 481 TTTTGGTATTCTTGTACCTTCCTTATCTTTAAACATCAAGGTTTT 525 |||||||||||||||||| ||||| ||| | ||| |||| |||| Sbjct 493 TTTTGGTATTCTTGTACCA-CCTTACCTTGATACACCAAGCTTTT 536 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19268572445 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5