BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31090.1
Length=488
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933646 jgi|Araly1|933646|scaffold_401634.1 462 9e-130
> Ahg933646 jgi|Araly1|933646|scaffold_401634.1
Length=268
Score = 462 bits (250), Expect = 9e-130
Identities = 262/268 (98%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 125 aaCTCGCCGCCGGAGCCACCATGTGCGACGGAGATTGCCGtcctctcggtttcctcttag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACTCGCCGCCGGAGCCACCATGTGCGACGGAGATTGCCGTCCTCTCGGTTTCCTCTTAG 60
Query 185 gtcttcctttcgccttcctttctctccttctctccATCATCGGTGTCATTATCTGGATCG 244
||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||
Sbjct 61 GTCTTCCCTTCGCCTTCCTCTCTCTTCTTCTCTCCATCATCGGTGTCGTTATCTGGATCG 120
Query 245 TCGGATTGTTGTTATCATGCATATGTCCATGTTGCTTGTGTGTGACTGTACTAGTGGAGA 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TCGGATTGTTGTTATCATGCATATGTCCTTGTTGCTTGTGTGTGACTGTACTAGTGGAGA 180
Query 305 TCGCAATTGGTTTGATTAAAGCCCCAATTCATGTTATGGAGTGGTTCATGTCCAAGATCC 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCGCAATTGGTTTGATTAAAGCCCCAATTCATGTTATGGAGTGGTTCATGTCCAAGATCC 240
Query 365 CTTGTTGAGATCTTCTCCTTCTTCTTCT 392
|||||||||||||||| |||||||||||
Sbjct 241 CTTGTTGAGATCTTCTTCTTCTTCTTCT 268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17704193296
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5