BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31100.1
Length=1247
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320861 jgi|Araly1|320861|fgenesh1_pm.C_scaffold_4000918 1347 0.0
Ahg910311 jgi|Araly1|910311|Al_scaffold_0001_565 377 8e-104
> Ahg320861 jgi|Araly1|320861|fgenesh1_pm.C_scaffold_4000918
Length=1065
Score = 1347 bits (729), Expect = 0.0
Identities = 836/886 (94%), Gaps = 13/886 (1%)
Strand=Plus/Plus
Query 367 CAGACGAAGGCAAGAAGTTGTTAGGGAGGAGGGGCATTGTTGTTGCATGGCGAGGGACCA 426
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 188 CAGACGAAGGCAAGAAGTTGTTAGGGAGGAGGGACATTGTTGTTGCATGGCGAGGAACCA 247
Query 427 TTCAGCTGTACGAGTGGGCTAACGATTTCGATTTCCCACTTGAATCAGCTGTTA-TGGTT 485
||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||
Sbjct 248 TTCAGCTGTACGAGTGGGCTAACGACTTCGATTTCCCACTTGAATCAGCTGTTACT-GTT 306
Query 486 TTCCCTGGAGCTAACCCGAATGACGAGCCTCGCGTAGCAAATGGTTGGCTATCCCTTTAT 545
|||||| |||||||||||||||||||||||||| |||| ||||||||||| || ||||||
Sbjct 307 TTCCCTCGAGCTAACCCGAATGACGAGCCTCGCATAGCCAATGGTTGGCTGTCTCTTTAT 366
Query 546 ACATCCACTGATCCACGATCACGTTTTGACAAGACCAGTGCACAAGAACAGGTTCAAGAA 605
|||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| |
Sbjct 367 ACATCCACTGATCCGCGATCGCGTTTTGACAAGACCAGTGCACAAGAGCAGGTTCAAGGA 426
Query 606 GAGCTCAAAAGGTTACTAGAATTGTACAAAAACGAAGACGTTACCATCACCTTAACAGGC 665
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 427 GAGCTTAAAAGGTTACTAGAATTGTACAAAAACGAAGACATTACCATCACCTTAACAGGC 486
Query 666 CATAGCTTGGGCGCAGTTATGTCGATTCTATCCGCCGCAGACTTTCTCCATAACGAATGG 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 CATAGCTTGGGCGCAGTTATGTCGATTCTATCCGCCGCAGACTTTCTCCATAACGAATGG 546
Query 726 CCTAAGATCACACCAAGTCTACAACACAGCCTA---TGTGTCACAGTATTT-GCTTTCGG 781
||||||||||||||||||||||||||||| ||| ||||||||||| ||| ||||| ||
Sbjct 547 CCTAAGATCACACCAAGTCTACAACACAGGCTATCCTGTGTCACAGT-TTTCGCTTTTGG 605
Query 782 GAGTCCCCAAATCGGTGACCGAAGCTTCAAAAGACTCGTAGAGTCTCTCGAACACCTCCA 841
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 606 TAGTCCCCGCATCGGTGACCGCAGCTTCAAAAGACTCGTAGAGTCTCTCGAACACCTCCA 665
Query 842 CATCCTAAGAGTAACAAACGTCCCGGACCTCATTCCCCGTTACCCCGTATTCAGGTTCAC 901
|||| ||||||||||||| ||||| || |||||||| |||||||| ||||||||||||||
Sbjct 666 CATCTTAAGAGTAACAAATGTCCCAGATCTCATTCCGCGTTACCCGGTATTCAGGTTCAC 725
Query 902 AGATATAGGCGAGGAGCTTCAAATCAACACATTAAAATCAGAGTACCTAAAACGATCTCT 961
|||| |||||||||||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 726 AGATGTAGGCGAGGAGCTTCAAATCAACACACTGAAATCAGAGTACCTGAAACGATCTCT 785
Query 962 AAACCTGGGACATTTCCATAACCTGGAGGCTTACTTACACGGCGTGGCAGGGACACAACA 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 AAACCTGGGACATTTCCATAACCTGGAGGCTTACTTACACGGCGTGGCAGGGACACAACA 845
Query 1022 CAACCAAGGAGAATTCAAACTAGAGATTAACCGAGATATAGCACTGGTAAACAAAGGTTT 1081
||| ||||||||||||||||||||||| ||||| ||||| || ||||| |||||||||||
Sbjct 846 CAATCAAGGAGAATTCAAACTAGAGATAAACCGCGATATTGCGCTGGTGAACAAAGGTTT 905
Query 1082 AGATGCTCTTGAAGATAAGTACTTAGTACCAGGACATTGGTGGGTTCTTGAGAACAAAGG 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 AGATGCTCTTGAAGATAAGTACTTAGTACCAGGACATTGGTGGGTTCTTGAGAACAAAGG 965
Query 1142 AATGGTTCAAAGTGATGATGGGACATGGAAACTAAATGGTGACAGGTCaaagaagaaaca 1201
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 966 AATGGTTCAAAGTGATGATGGGACATGGAAACTAAATGGTGACAGGTCAAAGAACAAACA 1025
Query 1202 agaagaagaagacgaaaaagaagaaaaCAATTGCAAATTCCCATGA 1247
|||||||||||| | |||||||||||||||||||||||||||
Sbjct 1026 AGAAGAAGAAGA--A----GAAGAAAACAATTGCAAATTCCCATGA 1065
Score = 191 bits (103), Expect = 1e-47
Identities = 117/124 (94%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 3 ATGGTAGGAGACATCGCCACGAGATGGAAAGAATTGAGCGGTAGTAGCAAGTGGAAAGAC 62
||||| ||||||||||||| ||||||||||||||||||||| | |||||| |||||||||
Sbjct 1 ATGGTCGGAGACATCGCCAAGAGATGGAAAGAATTGAGCGGCAATAGCAAATGGAAAGAC 60
Query 63 CTGCTTGATCCTCTTGACTTGGATCTACGCCGTTATATCCTACACTATGGTGATATGGCT 122
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 61 CTGCTTGATCCTCTTGACTTGGATCTACGTCGTTATATCCTACACTATGGTGACATGGCT 120
Query 123 GAGG 126
||||
Sbjct 121 GAGG 124
Score = 117 bits (63), Expect = 2e-25
Identities = 67/69 (97%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 170 AGGAGATAGCTGCTACACCAAAGAAGAGCTCTTTGCTCGAACCGGTTACCTCAAAGCCAA 229
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 122 AGGAGATAGCTGCTACACCAAAGAAGAGCTCTTTGCTCGAACTGGTTACCTCAAAGCAAA 181
Query 230 CCCTTTCAG 238
|||||||||
Sbjct 182 CCCTTTCAG 190
> Ahg910311 jgi|Araly1|910311|Al_scaffold_0001_565
Length=1053
Score = 377 bits (204), Expect = 8e-104
Identities = 740/994 (74%), Gaps = 55/994 (6%)
Strand=Plus/Plus
Query 50 CAAGTGGAAAGACCTGCTTGATCCTCTTGACTTGGATCTACGCCGTTATATCCTACACTA 109
||| ||| ||| |||||||||||| |||||| |||||| ||||| || ||| | |||||
Sbjct 48 CAAATGGCAAGGCCTGCTTGATCCACTTGACCCGGATCTTCGCCGCTACATCATTCACTA 107
Query 110 TGGTGATATGGCTGAGGTAGGGTACCTTGCCTTTAA-TAGTGACCGCCGGTCTAAATATG 168
|||||| ||| || |||| || || ||||||||| | | ||||| ||| ||||| |
Sbjct 108 TGGTGAGATGTCTCAGGTTGGTTATGATGCCTTTAACT-GGGACCGTAAGTCCAAATACG 166
Query 169 TAGGAGATAGCTGCTACACCAAAGAA-GAGCTCTTTGCTCGAACCGG-TTACCTCAAAGC 226
|| ||| | | ||| ||||||| | || |||||||||||||| || ||| |||||
Sbjct 167 CCGGTGATTGTTATTAC-TCAAAGAACCAACTGTTTGCTCGAACCGGCTT-CCTTAAAGC 224
Query 227 CAACCCTTTCAGGTACGAGGTGACCAAGTACATATATGGAACTTCGTCTATAAGGTTACC 286
|||||||||||||||| | ||||| |||||||| || | ||| | || |||| ||||||
Sbjct 225 CAACCCTTTCAGGTACAATGTGACTAAGTACATCTACGCAACAGCTTCCATAAAGTTACC 284
Query 287 AGA-ATGTTTCATAATCAAATCATTGTCAAGGGAAGCATGGAACAAAG-AGTCTAACTGG 344
| | |||||||| |||| || ||||||| ||| |||| | | || ||||||||
Sbjct 285 A-ATCTGTTTCATCGTCAAGTCTTTGTCAAAGGATGCATCTCGC-GTGCAGACTAACTGG 342
Query 345 TTGGGTTACATTGCGGTGGCTACAGACGAAGG-CAAGAAGTTGTTAGGGAGGAGGGGCAT 403
||||||||||||| || ||||||||| | || ||| | ||||||| ||||| | |||
Sbjct 343 ATGGGTTACATTGCAGTTGCTACAGACCAGGGTAAAG-CGATGTTAGGAAGGAGAGACAT 401
Query 404 TGTTGTTGCATGGCGAGGGACCA-TTCAGCTGTACGAGTGGGCTAACGATTTCGATTTCC 462
||||||||||||| || ||| || |||||| || || |||||||| ||||| ||||| |
Sbjct 402 TGTTGTTGCATGGAGA-GGAACACTTCAGCCATATGAATGGGCTAATGATTTTGATTTTC 460
Query 463 CACTTGAATCAGCTGTTAT-GGTTTTCCCTGGAGCTAACCCGAATGACGAGCCTCGCGTA 521
| ||||| |||||| | | ||||||||| | | || |||| || || | ||||| |
Sbjct 461 CGCTTGAGTCAGCT-ATCTCGGTTTTCCCAGTAACTGACCCCAAAGATAACCCTCGTATT 519
Query 522 GCAAATGGTTGGCTATCCCTTTATACATCCACTGATCCACGATCACGTTTTGACAAGACC 581
| || ||| ||||| | | ||||| | ||||| | || |||| || ||||| |||
Sbjct 520 GGAAGTGGCTGGCTCGACATCTATACCGCTTCTGATTCTCGCTCACCTTATGACACGACT 579
Query 582 AGTGCACAAGAACAGGTTCAAGAAGAGCTCAAAAGGTTACTAGAA-TTGTACAAAAACGA 640
||||||||||||||||| |||| ||||| || ||||| |||||| || ||||| || ||
Sbjct 580 AGTGCACAAGAACAGGTACAAGGTGAGCTGAAGAGGTTGCTAGAACTT-TACAAGAATGA 638
Query 641 AGACGTTACCATCACCTTAACAGGCCATAGCTTGGGCGCAGTTATGTC-GATTCTATCCG 699
|| | | |||||| || ||||||||||||||||||||||||||||| | ||||||| |
Sbjct 639 GGAAATAAGCATCACTTTCACAGGCCATAGCTTGGGCGCAGTTATGTCAG-TTCTATCAG 697
Query 700 CCGCAGA-CTT-TCTCCATAACGAATGGC-CTAAGATCAC-ACCAAGTCTACAACACA-G 754
| ||||| ||| ||| || | || | | ||| ||| | |||||| ||| | | |
Sbjct 698 CTGCAGATCTTGTCT--ATGGCAAAAAGAAC-AAGGTCAATAT-AAGTCTTCAAAAAAAG 753
Query 755 CCTA-TG--TGTCACAGTATTTGCTTTCGGGAGTCCCCAAATCGGTGACCG-AAGCTTCA 810
| | | | ||||||| ||||||||||||||||| | || || |||| || |||||
Sbjct 754 CA-AGTTCCTATCACAGTTTTTGCTTTCGGGAGTCCTCGGATTGGAGACCATAA-CTTCA 811
Query 811 AAAGAC-TCGTAGAGTCTCTCGAAC-ACCTCCACATCCTAAGAGTAACAAACGTCCCGGA 868
||| || |||| || || ||| ||| || | ||||||||||| || ||| || || ||
Sbjct 812 AAA-ACATCGTCGACTCACTCCAACCAC-TAAACATCCTAAGAATAGTAAATGTTCCAGA 869
Query 869 CCTCATTCCCCGTTACCC-CGTATT-CAGGT-TCACAGATATAGGCGAGGAGCTTCA-A- 923
|| || | ||| || | | || | | | | |||| || ||||||| | || | |
Sbjct 870 TGTCGCACCACATTATCCAC-TCTTACTG-TATG-CAGAAATTGGCGAGGTG-TT-AGAG 924
Query 924 ATCAACACATTAAAATCAG-AGTACCTAAAACGATCTCTAAACCTG-GGACATTTCCATA 981
||||| || || || ||| | ||||| ||||| ||||| ||| | ||| | | |||||
Sbjct 925 ATCAATACTTTGAACTCAACA-TACCTGAAACGGTCTCTGAACTTCAGGA-ACTACCATA 982
Query 982 ACCTGGAGGCT-TACTTACACGGCGTGGCAGGGA 1014
|||||||| | ||| | |||||| | |||||||
Sbjct 983 ACCTGGAGA-TATACCTGCACGGCATAGCAGGGA 1015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46586204574
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5