BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31110.2
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482040 jgi|Araly1|482040|fgenesh2_kg.4__1100__AT2G31110.2 1997 0.0
> Ahg482040 jgi|Araly1|482040|fgenesh2_kg.4__1100__AT2G31110.2
Length=1288
Score = 1997 bits (1081), Expect = 0.0
Identities = 1225/1294 (95%), Gaps = 12/1294 (1%)
Strand=Plus/Plus
Query 5 TTTCTTGGCGACCTTAAATACAAAATGGGACTCTGTTTCCAACTCAACTTAGCCTCTCTG 64
|||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTTCTTAGTGACCCCAAAAACAAAATGGGACTCTGTTTCCAACTCAACTTAGCCTCTCTG 61
Query 65 TCTCTCATACTCTTCTCTTCATTCCCTGGACTTTTAGCACAATCTCAACAACATTTCTTG 124
||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| |||
Sbjct 62 TCTCTCATACTCTTCTCTTCATTTCCTGAACTATTAGCACAATCTCAACAACATTTTTTG 121
Query 125 GGACAAAACAACACAAGCTTGTTGAGTGGAGGGAGATGCAATTTGGCTAGAGGCAAATGG 184
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 122 GGACAAAACAACACAAGCTTGTTGAGTGGAGGAAGATGCAATTTGGCTAGAGGAAAATGG 181
Query 185 GTCTATGATTCTTCATATCCTCTCTATAGTGCTTTTAGTTGTCCCTTCATCGATTCCGAA 244
|||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 182 GTCTATGATTCTACATATCCTCTCTATAGTGCTTTTAATTGTCCCTTCATCGACTCCGAA 241
Query 245 TTCAACTGCCAGAAAGCGGGTCGTCCGGACACTAACTATCAACACTTCCGTTGGCAGCCT 304
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| |||
Sbjct 242 TTCAACTGCCAGAAAGCGGGTCGACCCGACACTAACTATCAACACTTCCGATGGCAACCT 301
Query 305 TTCTCCTGTCCTCTCCCTAGATTCGATGGGGCGAATTTTATGAGGAGAATGAGAGGGAAG 364
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 302 TTCTCCTGTCCTCTCCCCAGATTCGATGGGGTGAATTTTATGAGGAGAATGAGAGGGAAG 361
Query 365 AAGATAATGATGGTAGGTGACTCACTGAGTCTTAACATGTTCGAATCGTTGGCCTGCTTG 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 AAGATAATGATGGTAGGTGACTCACTGAGTCTTAACATGTTCGAATCGTTGGCCTGCTTG 421
Query 425 CTTCATGCTTCTCTCCCTAATGCTAAGTACTCTCTTCGTCGAAGCCAACCTCTCACTTCC 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CTTCATGCTTCTCTCCCTAATGCTAAGTACTCTCTTCGTCGAAGCCAACCTCTCACTTCC 481
Query 485 CTCACTTTCCAGGATTATGGAGTGACGATAAATTTGTATAGAACACAGTTTCTAGTAGAT 544
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 482 CTCACTTTCCAGGATTATGGAGTGACGATACATTTGTATAGAACACAGTTTCTAGTAGAC 541
Query 545 GTGGTTCAAGAAAAGGCAGGACGAGTGCTTGTGCTTGACTCCATCAAACAAGCCGATGCT 604
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 542 GTGGTTCAAGAAAAGGCAGGAAGAGTGCTTATGCTTGACTCCATCAAACAAGCCGATGCT 601
Query 605 TGGCTTGGCATGGATGTTCTTATCTTCAACTCGTGGCACTGGTGGACTCACACCTCCGGA 664
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 602 TGGCTTGGCATGGACGTTCTAATCTTCAACTCGTGGCACTGGTGGACTCACACCTCCGGA 661
Query 665 CTTCAGCCCTGGGATTATATGAGGGAAGGAAACCAATTGTACAAAGACATGAACAGGCTT 724
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CTCCAGCCGTGGGATTATATGAGGGAAGGAAACCAATTGTACAAAGACATGAACAGGCTT 721
Query 725 GTGGCTTATTACAAAGGACTTAACACATGGGCTCGTTGGATTAACAATAACATTGTCCCT 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GTGGCTTATTACAAAGGACTTAACACATGGGCTCGTTGGATTAACAATAACATTGTCCCT 781
Query 785 TCACGTACTCAAGTCTTCTTTCAAGGTGTTTCTCCTGTCCACTATGACGGAAGAGAGTGG 844
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 782 TCACGCACTCAAGTCTTCTTTCAAGGTGTTTCTCCTGTCCACTATGATGGAAGAGAGTGG 841
Query 845 AACGAACCATTGAAGTCGTGCAATGGTCAAACTCAGCCGTTCATGGGACAAAGATATCCA 904
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 AACGAACCATTGAAGTCGTGCAATGGTCAAACTCAGCCGTTCATGGGACAAAGATATCCC 901
Query 905 GGAGGATTGCCCTTAGGTTGGGTTGTGGTTAACAAAGTGTTGAGCCGAATTA-GAAAACC 963
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 902 GGAGGATTGCCCTTAGGTTGGGTTGTGGTTAACAAAGTGTTGAGCCGAATCAAGAAA-CC 960
Query 964 GGTCCATCTTCTCGATCTCACTACTCTCTCGGAGTATCGCAAAGACGCACATCCAAGTCT 1023
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGTCCGTCTTCTCGATCTCACTACTCTCTCGGAGTATCGCAAAGACGCACATCCAAGTCT 1020
Query 1024 CTACAATGGTATCTCAAAGGATCTAGACTGTAGCCATTGGTGCCTCCCTGGACTCCCTGA 1083
||| |||||| ||||||||| ||||||||| ||||||||||| |||||||||||||||||
Sbjct 1021 CTATAATGGTCTCTCAAAGGGTCTAGACTGCAGCCATTGGTGTCTCCCTGGACTCCCTGA 1080
Query 1084 TACTTGGAACTTACTTCTCTACTCATCTCTTACTTCCTAGTCCTTGTTTTACATATTTGT 1143
||||||||||| |||||||||| |||| || |||||||||| || |||||||| || |
Sbjct 1081 TACTTGGAACTCACTTCTCTACGCATCACTCACTTCCTAGTTCTCGTTTTACACATATAA 1140
Query 1144 TTGTTT-CTACCATTTTATAAATAGTTTGTGATGAT-CCTGTGTGATTGTGATTGATATT 1201
|| ||| |||| ||||||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct 1141 TTCTTTTCTACTATTTTATAAATAGTTCGTGA-GATTCCTGTGTGATTGTGATTGATATT 1199
Query 1202 TTTCC-TTCGTTAATTTAATCTTAAA-TGTAATTAACATTGTTACTAGTTTACTTGCAGC 1259
||| || ||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 1200 CGTCCGTT-GTTAATTTAATCTTAAAATGTAATTAACATTATTACTAGTTTACATGCA-- 1256
Query 1260 ATCGATCAGCTTAAATTCTCCATACATTTGTTAT 1293
| | |||||||||||||||||||| |||| ||||
Sbjct 1257 A-C-ATCAGCTTAAATTCTCCATAAATTTTTTAT 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49216685847
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5