BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31130.1
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482041 jgi|Araly1|482041|fgenesh2_kg.4__1101__AT2G31130.1 2091 0.0
> Ahg482041 jgi|Araly1|482041|fgenesh2_kg.4__1101__AT2G31130.1
Length=1585
Score = 2091 bits (1132), Expect = 0.0
Identities = 1474/1629 (90%), Gaps = 63/1629 (4%)
Strand=Plus/Plus
Query 20 TTGCTTCATCGTAATAACTTACTCTCTTTCACGAAAA--CTCTCTCAATCGAGTGAGAAA 77
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1 TTGCTTCATCGTAATAACTTACTCTCTTTCACGAAAACTCTCTCTCCATCGAGTGAGAAA 60
Query 78 TCAGAATTCGTACGTTGCTTTGAGGACGCACACAAGAAC-TTAATTCGATTCAGAGAGAT 136
|||||||||||||||||||||||| || || ||||||| || || |||| |||| |
Sbjct 61 TCAGAATTCGTACGTTGCTTTGAGAACAAACTCAAGAACGTT-GTTGGATTTGGAGAAAC 119
Query 137 AATGGATTTTAAAGGTATAAAATGGGTTGGGAATGTTTATCAGAAGTTTGAAGCAATGTG 196
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 AATGGATTTTAAAGGTATAAAATGGGTTGGGAATGTGTATCAGAAGTTTGAAGCAATGTG 179
Query 197 CTTAGAGGTTGAAGAAATTATCGTGCAGGACACAGCAAAATATGTTGAGAATCAAGTTCA 256
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTTAGAGGTTGAAGAAATTATTGTGCAGGACACAGCAAAATATGTTGAGAATCAAGTTCA 239
Query 257 GACGGTTGGTAACAGTGTCAAGAAATTCTGTTCAGATGTGGTTCACGACTTGCTGCCTGA 316
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 240 GACTGTTGGTAACAGTGTCAAGAAATTCTGTTCAGATGTGGTTCAAGACTTGCTTCCTGA 299
Query 317 TGAATCTGTAGATTCGGGAAAACCTTTGCCCGTTTCTATGTTACATGAATACGCCCCTGT 376
||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 TGACTCTGTAGATTCGGAAAAACCTTTGCCCGTTTCTATGTTACATGAATACGCTCCTGT 359
Query 377 TTATTCTTTCaaaaaaaaaaaaGATAGTATGAACCGGAAAACTAAAGATGTGACACAAGA 436
|| ||| |||||||| |||| |||||||||||||| ||||||| |||||||| ||||||
Sbjct 360 TTGTTCCTTCAAAAAGAAAAGAGATAGTATGAACCAAAAAACTAGAGATGTGAAACAAGA 419
Query 437 GCAAGAGGTAACTGAGGGGAAGAAGGATGGATTTGCAAAGAAATTACGTGGTCTTGATGC 496
|||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 420 ACAAGAGGTAACTGAAGGGAAGAAGGATGGATGTGCAAAGAAATTCCGTGGTCTTGATGC 479
Query 497 AGATGATTATGATATCTGTACTTCTCCAAGGCAGTATAGTTATGGAGGTCCATACAGAAG 556
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 480 AGATGATTACGATATCTGTACGTCTCCAAGGCAGTATAGTTATGGAGGTCCATATAGAAG 539
Query 557 AACAAGAATCGGCCGCAAACAGATATTTAAAAAAGAGGAGCTTTCCCAAGTCATCAGGCC 616
||||||| | ||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 540 AACAAGAGTTGGCCGCAAACAGATATTTAAAAAGGAGGAGCTTTCCCAAGTCACCAGGCC 599
Query 617 TTATATCCAGAAAGACTTGACTAGTTTATCAATGGTTCATAGTGCTCGTGTCAAAGATGA 676
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTATATCCAGAAAGACTCGAGTAGTTTATCAATGGTTCATAGTGCTCGTGTCAAAGATGA 659
Query 677 TCTTGGAACTGTAAACTCTAGTAGTTTATCAATGGTTCATAGTGCTCGTGTCAATGATGA 736
| | |||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||
Sbjct 660 TGTCGGAACTGTAAACTCAAGTAGTTTATCTATGGTTCATAGTGCTCGTATCAAAGATGA 719
Query 737 TGTTGGAACTGTAAACTCAAGTAGTTTATCAATGGTTCATCA-TGCTAGTATGAAAGATG 795
|||||||||||||||||||||||||||||||||||||||| | |||| |||| |||||||
Sbjct 720 TGTTGGAACTGTAAACTCAAGTAGTTTATCAATGGTTCAT-AGTGCTCGTATCAAAGATG 778
Query 796 ATGTCGGAACTGTAAAGTCAAGTGATTCTCCTCCAGGTGAAGTAGAAAAACTCATCTCCA 855
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 779 ATGTTGGAACTGTAAAGTCAAGTGATTCTCCTCCAGGTGAAGTAGAAAAACTCATCTCTA 838
Query 856 AAAAGAAATGTCAGAAAGACGATA-AAGCCAAAAATCAACAGAGTCTGACAGTGGTTAAT 914
||||| ||||||||||||| |||| || ||||||||||||||||||||||||||||||||
Sbjct 839 AAAAGGAATGTCAGAAAGATGATAGAA-CCAAAAATCAACAGAGTCTGACAGTGGTTAAT 897
Query 915 TCTGTTAAAAGTAATGATTCAGAGGTTATAGTCGATAATGAACACGGTCTT-TCGGCAGA 973
||||||||||| |||| ||||||| ||| | |||| |||||||| |||||| | || ||
Sbjct 898 TCTGTTAAAAGCAATGTTTCAGAGATTAGAATCGACAATGAACATGGTCTTATGGGG-GA 956
Query 974 TAAGTCTGTTAGAAGTCAAGATTTGGAGATTCAACCATCTCTGGCCACTAGCTTACCTGC 1033
|| || || |||||||| |||||||||||||||| | |||||||||||| ||||
Sbjct 957 TA-GT-----AG---TCAAGATTCGGAGATTCAACCATCTGTTGCCACTAGCTTAGCTGC 1007
Query 1034 AGAATCTGATGATTGCAGAAAGGAAACCAATGTGGA-A-A----CAAGTTCGAGTTCTGT 1087
|| ||||||||||||||||||||||||||| ||||| | | ||||||||||||||||
Sbjct 1008 AGGATCTGATGATTGCAGAAAGGAAACCAACGTGGATACAAAAACAAGTTCGAGTTCTGT 1067
Query 1088 CTCAGAGCCGAAGTCAGAGATTCTCCAACATCTTAGTGGGAGATCAGTTGAAGAAAGCTG 1147
|||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1068 CTCAGAGCAGAAGTCAGAGATTCTCCAACATCTTAGTGGAAGATCAGTCGAAGAAAGCTG 1127
Query 1148 TATACTTGTGGATAGAGACGAATTCCATAGTGTGTTTCCTGACAAGATGGAGAATGACAA 1207
|||||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 1128 TATACTCGTGGATAGAGACGAATTTCATTGTGTATTTCCTGACAAGATGGAGAATGACAA 1187
Query 1208 ACACAAACCTTACAAGAAGATCAGAGACGCTATATCTTCAAGAATGAAGCAAAACAGAGA 1267
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1188 ACACAAACCTTACAAGAAGATCCGAGACGCTATATCTTCAAGAATGAAGCAAAACAGAGA 1247
Query 1268 AAAAGAATACAAGCGACTTGCCCGGCAATGGTACGCAGAAGATGTTGAAAATGGGAGAGA 1327
||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 1248 AAAAGAATACAAGCGACTTGCGCGTCAATGGTACGCAGAAGATGTTGAAAATGGAAGAGA 1307
Query 1328 ATGTGGCGATAATCCGAAACCGAT-AGAGGAAAACCAATCATCAGAAGAATCTGAATGGG 1386
|||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1308 ATGTGGCGATGATCCGAAACC-ATTAGAGGAAAACCAATCATCAGAAGAATCTGAATGGG 1366
Query 1387 AGCTTCTGTAAAATGTTAAATGGTAAACAGAGAATATAGctctcctctctctctTTGTAC 1446
||||||||||||||||||||||||||| | ||||| | | | ||||
Sbjct 1367 AGCTTCTGTAAAATGTTAAATGGTAAA-------T----CTCTC-T-T-T------GTAC 1406
Query 1447 ATAAAGAATGTATTAAGCAAAACATAAGATAAGAAGCAGCTAAGAAGTCAAAAGGCTTCT 1506
||||||||||||||||||||||||| |||||||||||||| ||| || ||||||
Sbjct 1407 ATAAAGAATGTATTAAGCAAAACATCCGATAAGAAGCAGCT--GAA---AA--GGCTTC- 1458
Query 1507 TCCTCTGGTTACATAATAAATAAGGCCCTTATCTTTATCAAATTTTCGTTTAACTTATTT 1566
| |||| |||||||||||||||||| ||||| ||||||||||||| || |||||| |||
Sbjct 1459 -C-TCTGCTTACATAATAAATAAGGCTCTTATATTTATCAAATTTTTGTCTAACTTTTTT 1516
Query 1567 TTAT----AATTTCAAGTGAAGATGTTTT--ATAAATTGTTTGCATTTGTGAATATTTTT 1620
|| | ||||||||||||| ||||||| ||||||||||||||| |||||||||||||
Sbjct 1517 TTTTTTTTAATTTCAAGTGAAAATGTTTTTTATAAATTGTTTGCATATGTGAATATTTTT 1576
Query 1621 GTGGGAGAA 1629
|||||||||
Sbjct 1577 GTGGGAGAA 1585
Score = 185 bits (100), Expect = 7e-46
Identities = 114/121 (94%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 638 TAGTTTATCAATGGTTCATAGTGCTCGTGTCAAAGATGATCTTGGAACTGTAAACTCTAG 697
||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| ||
Sbjct 681 TAGTTTATCTATGGTTCATAGTGCTCGTATCAAAGATGATGTTGGAACTGTAAACTCAAG 740
Query 698 TAGTTTATCAATGGTTCATAGTGCTCGTGTCAATGATGATGTTGGAACTGTAAACTCAAG 757
|||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||
Sbjct 741 TAGTTTATCAATGGTTCATAGTGCTCGTATCAAAGATGATGTTGGAACTGTAAAGTCAAG 800
Query 758 T 758
|
Sbjct 801 T 801
Score = 182 bits (98), Expect = 9e-45
Identities = 119/129 (92%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 691 ACTCTAGTAGTTTATCAATGGTTCATAGTGCTCGTGTCAATGATGATGTTGGAACTGTAA 750
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 614 ACTCGAGTAGTTTATCAATGGTTCATAGTGCTCGTGTCAAAGATGATGTCGGAACTGTAA 673
Query 751 ACTCAAGTAGTTTATCAATGGTTCATCA-TGCTAGTATGAAAGATGATGTCGGAACTGTA 809
|||||||||||||||| ||||||||| | |||| |||| ||||||||||| |||||||||
Sbjct 674 ACTCAAGTAGTTTATCTATGGTTCAT-AGTGCTCGTATCAAAGATGATGTTGGAACTGTA 732
Query 810 AAGTCAAGT 818
|| ||||||
Sbjct 733 AACTCAAGT 741
Score = 91.6 bits (49), Expect = 2e-17
Identities = 57/61 (93%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 638 TAGTTTATCAATGGTTCATAGTGCTCGTGTCAAAGATGATCTTGGAACTGTAAACTCTAG 697
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||| || ||
Sbjct 741 TAGTTTATCAATGGTTCATAGTGCTCGTATCAAAGATGATGTTGGAACTGTAAAGTCAAG 800
Query 698 T 698
|
Sbjct 801 T 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61744287145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5