BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31140.1 Length=972 Score E Sequences producing significant alignments: (Bits) Value Ahg482042 jgi|Araly1|482042|fgenesh2_kg.4__1102__AT2G31140.1 1088 0.0 Ahg919333 jgi|Araly1|919333|scaffold_100614.1 431 5e-120 > Ahg482042 jgi|Araly1|482042|fgenesh2_kg.4__1102__AT2G31140.1 Length=857 Score = 1088 bits (589), Expect = 0.0 Identities = 701/751 (93%), Gaps = 23/751 (3%) Strand=Plus/Plus Query 145 ATTTTAAGGGTTTTGGTCATGGCTTCAATCTCGACTTGGTTCCGATACATGGCTCACAAG 204 |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 98 ATTTGAAGGGTTTCGGCCATGGCTTCAATCTCGACTTGGTTCCGATACATGGCTCACAAG 157 Query 205 CTCGAGTATTCCCTCACTCTCAGTCTCAAGAGTCATAGGAGTAATAAACTGAGTGACCGG 264 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 158 CTCGAGTATTCCCTCACTCTCAGTCTCAAGAGTCATAGGAGTAAGAAACTGAGTGACCGG 217 Query 265 GAACTTATTCAAATAATCTGCAAGAATCTGTTCTATGGGAAAATAACCTACTTACACTCG 324 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 218 GAACTTATTCAAATAATTTGCAAGAATCTATTCTATGGGAAAATAACCTACTTACACTCA 277 Query 325 GATAAAGGACCAGAAATGTCACCAACCATGACAGCAAATGAAAACACACTTCTTATTCGT 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 278 GATAAAGGACCAGAAATGTCACCAACCATGACAGCAAATGAAAACACACTTCTTATCCGT 337 Query 385 AAGATACCAATTGCTAATACCAGGTTTGTATTCATTGGAGATGCTGTCGTCTTAAAGGAT 444 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 338 AAGATACCAATTGCTAATACCAGGTTTGTATTCATTGGAGATGCCGTCGTCTTAAAGGAC 397 Query 445 CCAAACGATTCAGATAAGTATCTGGTAAGAAGATTAGCAGCTGTAGAAGGATTCGAAATG 504 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 398 CCAAATGATTCAGATAAGTATCTGGTAAGAAGATTAGCAGCTGTAGAAGGATTTGAAATG 457 Query 505 GTATCGGGTGATGAAAAAGAGGAGCCTTTTGTTCTTGAGAAGAATCAGTGTTGGGTAACA 564 ||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||| Sbjct 458 GTATCGGGTGATGAAAAAGAGGAGCCTTTTGTTCTCGAAAAGGATCAGTGTTGGGTAACA 517 Query 565 GCTGAAAACCAGGAGCTCAAAGCTAAGGAAGCATATGATAGTAGAACATTTGGTCCAGTT 624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 518 GCTGAAAACCAGGAGCTCAAAGCTAAGGAAGCATATGATAGTAGAACATTTGGTCCAGTT 577 Query 625 TCAACAGCAGACATTGTTGGAAGAGCTATATACTGTCTGAGAACAGCCGTCGATCACGGA 684 ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 578 TCAACAGCAGATATTGTTGGAAGAGCTATATATTGTCTGAGAACAGCCGTCGATCACGGT 637 Query 685 CCTGTTCGAAACAGCCAAACTGCAATGGGACAAGATTCTCCAATCCTGGCCGTGGAATTG 744 |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 638 CCTGTTCGAAACAGTCACACTGCAATGGGACAAGATTCTCCAATCCTGGCCGTAGAATTG 697 Query 745 GACGTGGACGAGATGGCTAAGAACCATAAGGCATAGAGAGACGCACTTTCTTGTGTTTGT 804 |||||||||||||||||||| ||||| |||||||| |||||||||||||| Sbjct 698 GACGTGGACGAGATGGCTAAAAACCACAAGGCATAAAGAGACGCACTTTC---------- 747 Query 805 TTATTATTGTCAAAGCTAAAATTGCCTTCTTTGATTGAGATTTGAGAAAACAATAAA-TC 863 | | | ||| |||||||||||||||||||||||||||| |||||||||| || Sbjct 748 --A--A-----A--GCTGAAATTGCCTTCTTTGATTGAGATTTGAGTAAACAATAAAATC 796 Query 864 ATTACAACAATGAAACTAAAA-TCCTAAATT 893 ||||||||||||| ||||||| ||||||||| Sbjct 797 ATTACAACAATGATACTAAAAATCCTAAATT 827 Score = 82.4 bits (44), Expect = 6e-15 Identities = 59/65 (91%), Gaps = 5/65 (8%) Strand=Plus/Plus Query 1 ATCAAAAACCAAACCAAACCCATAGGGTTGTGTTGTTGCTGTTCTGTTCCTATCGACCAC 60 ||||||||||||||||||||||||||||||| | | |||||||||||| ||||||||| Sbjct 1 ATCAAAAACCAAACCAAACCCATAGGGTTGT-T-G---CTGTTCTGTTCCAATCGACCAC 55 Query 61 GGCGG 65 ||||| Sbjct 56 GGCGG 60 > Ahg919333 jgi|Araly1|919333|scaffold_100614.1 Length=659 Score = 431 bits (233), Expect = 5e-120 Identities = 496/623 (80%), Gaps = 18/623 (3%) Strand=Plus/Plus Query 163 ATGGCTTCAATCTCGACTTGGT-TCCGATACATGGCTCACAAGCTCGAGTATTCCCTCAC 221 ||||| || ||| ||| || | |||||||||||||||||||||||||||| || ||||| Sbjct 22 ATGGCATCCATCACGAATT-ATGTCCGATACATGGCTCACAAGCTCGAGTACTCTCTCAC 80 Query 222 TCTCAGTCTCAAGAGTCATAGGAGTA-ATAAACTGAGTGACCGGGAACTTATTCAAATAA 280 |||||| ||||||| |||| || | | || || |||||||||||||| || ||| Sbjct 81 TCTCAGCCTCAAGAAACATACTAG-AGAGAAGCTCAGTGACCGGGAACTCCTTGGGATAG 139 Query 281 TC-TGCAAGAATCTGTTCTATGGGAA-AATAACCTACTTACACTCGGATAAAGGACCAGA 338 || || |||||||| |||||| |||| |||||||||||||||||||||||||||| ||| Sbjct 140 TCATG-AAGAATCTATTCTAT-GGAAGGATAACCTACTTACACTCGGATAAAGGACAAGA 197 Query 339 AATGTCACCAACCATGACAGCAAATGAAAACACACTTCTTATTCGTAAGATACCAATTGC 398 ||| | ||||| ||| | ||||||||||||| || ||| | |||||| | ||| ||| Sbjct 198 GATGGCCCCAACTATGGGAACAAATGAAAACACGCTACTTGTCCGTAAGCTGCCAGTTGT 257 Query 399 TAATACCAGGTTTGTATTCATTGGAGATGCTGTCGTCTTAAAGGATCCAAACGATTCAGA 458 | | || |||| | ||| |||| |||||||| ||||| ||||| || || || | | Sbjct 258 TGACACAAGGTACATTTTCGTTGGGGATGCTGTTGTCTTCAAGGACCCGAATGAAAAAAA 317 Query 459 TAAGTATCTGGTAAGAAGATTAGCAGCTGTAGAAGGAT-TCGAAATGGTATCGGGTGATG 517 |||||| | || ||||||||||||||| |||| |||| | ||||||||||| |||||| Sbjct 318 GAAGTATATAGTCAGAAGATTAGCAGCTTTAGAGGGATCT-GAAATGGTATCAAGTGATG 376 Query 518 AAAAAGAGGAGCCTTTTGTTCTTGAGAAGAATCAGTGTTGGGTAACAGCTGAAAACCAGG 577 ||||| |||||||||||||| || ||| ||||||| ||||| |||||| ||||| | Sbjct 377 GGAAAGATGAGCCTTTTGTTCTCGAAAAGGATCAGTGCTGGGTCGTAGCTGAGAACCAAG 436 Query 578 AGCTCAAAGCTAAGGAAGCATATGATAGTAGAACATTTGGTCC-AGTTTCAACAGCAGAC 636 || | ||| |||||||||||||||||||| ||||||||||||| | |||| | || ||| Sbjct 437 AGATGAAATCTAAGGAAGCATATGATAGTCGAACATTTGGTCCGA-TTTCCATGGCGGAC 495 Query 637 ATTGTTGGAAGAGCTATATACTGTCTGAGAACAGCCGTCGATCACGGACCTGTTCGAAAC 696 || || |||||||||||||| |||||||| ||||| || ||||| || || || | ||| Sbjct 496 ATAGTAGGAAGAGCTATATATTGTCTGAGGACAGCGGTGGATCATGGTCCAGTAAGCAAC 555 Query 697 AGCCAAACTGCAATGGGACAAGATTCTCCAATCCTGGCCGTGGAA-TTGGACGTGGACGA 755 || || ||| |||| | | ||||||||||||||||| || ||| ||| ||||||| || Sbjct 556 AGTGAATTTGCCATGGAAGAGGATTCTCCAATCCTGGCGGTAGAACTTG-ACGTGGATGA 614 Query 756 GAT-GGCTAA-GAACCATAAGGC 776 || |||||| || ||| ||||| Sbjct 615 -ATTGGCTAAAGA-CCACAAGGC 635 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36102402399 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5