BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31140.1
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482042 jgi|Araly1|482042|fgenesh2_kg.4__1102__AT2G31140.1 1088 0.0
Ahg919333 jgi|Araly1|919333|scaffold_100614.1 431 5e-120
> Ahg482042 jgi|Araly1|482042|fgenesh2_kg.4__1102__AT2G31140.1
Length=857
Score = 1088 bits (589), Expect = 0.0
Identities = 701/751 (93%), Gaps = 23/751 (3%)
Strand=Plus/Plus
Query 145 ATTTTAAGGGTTTTGGTCATGGCTTCAATCTCGACTTGGTTCCGATACATGGCTCACAAG 204
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 ATTTGAAGGGTTTCGGCCATGGCTTCAATCTCGACTTGGTTCCGATACATGGCTCACAAG 157
Query 205 CTCGAGTATTCCCTCACTCTCAGTCTCAAGAGTCATAGGAGTAATAAACTGAGTGACCGG 264
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 158 CTCGAGTATTCCCTCACTCTCAGTCTCAAGAGTCATAGGAGTAAGAAACTGAGTGACCGG 217
Query 265 GAACTTATTCAAATAATCTGCAAGAATCTGTTCTATGGGAAAATAACCTACTTACACTCG 324
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 218 GAACTTATTCAAATAATTTGCAAGAATCTATTCTATGGGAAAATAACCTACTTACACTCA 277
Query 325 GATAAAGGACCAGAAATGTCACCAACCATGACAGCAAATGAAAACACACTTCTTATTCGT 384
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 278 GATAAAGGACCAGAAATGTCACCAACCATGACAGCAAATGAAAACACACTTCTTATCCGT 337
Query 385 AAGATACCAATTGCTAATACCAGGTTTGTATTCATTGGAGATGCTGTCGTCTTAAAGGAT 444
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 338 AAGATACCAATTGCTAATACCAGGTTTGTATTCATTGGAGATGCCGTCGTCTTAAAGGAC 397
Query 445 CCAAACGATTCAGATAAGTATCTGGTAAGAAGATTAGCAGCTGTAGAAGGATTCGAAATG 504
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 398 CCAAATGATTCAGATAAGTATCTGGTAAGAAGATTAGCAGCTGTAGAAGGATTTGAAATG 457
Query 505 GTATCGGGTGATGAAAAAGAGGAGCCTTTTGTTCTTGAGAAGAATCAGTGTTGGGTAACA 564
||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct 458 GTATCGGGTGATGAAAAAGAGGAGCCTTTTGTTCTCGAAAAGGATCAGTGTTGGGTAACA 517
Query 565 GCTGAAAACCAGGAGCTCAAAGCTAAGGAAGCATATGATAGTAGAACATTTGGTCCAGTT 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 GCTGAAAACCAGGAGCTCAAAGCTAAGGAAGCATATGATAGTAGAACATTTGGTCCAGTT 577
Query 625 TCAACAGCAGACATTGTTGGAAGAGCTATATACTGTCTGAGAACAGCCGTCGATCACGGA 684
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 578 TCAACAGCAGATATTGTTGGAAGAGCTATATATTGTCTGAGAACAGCCGTCGATCACGGT 637
Query 685 CCTGTTCGAAACAGCCAAACTGCAATGGGACAAGATTCTCCAATCCTGGCCGTGGAATTG 744
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 638 CCTGTTCGAAACAGTCACACTGCAATGGGACAAGATTCTCCAATCCTGGCCGTAGAATTG 697
Query 745 GACGTGGACGAGATGGCTAAGAACCATAAGGCATAGAGAGACGCACTTTCTTGTGTTTGT 804
|||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 698 GACGTGGACGAGATGGCTAAAAACCACAAGGCATAAAGAGACGCACTTTC---------- 747
Query 805 TTATTATTGTCAAAGCTAAAATTGCCTTCTTTGATTGAGATTTGAGAAAACAATAAA-TC 863
| | | ||| |||||||||||||||||||||||||||| |||||||||| ||
Sbjct 748 --A--A-----A--GCTGAAATTGCCTTCTTTGATTGAGATTTGAGTAAACAATAAAATC 796
Query 864 ATTACAACAATGAAACTAAAA-TCCTAAATT 893
||||||||||||| ||||||| |||||||||
Sbjct 797 ATTACAACAATGATACTAAAAATCCTAAATT 827
Score = 82.4 bits (44), Expect = 6e-15
Identities = 59/65 (91%), Gaps = 5/65 (8%)
Strand=Plus/Plus
Query 1 ATCAAAAACCAAACCAAACCCATAGGGTTGTGTTGTTGCTGTTCTGTTCCTATCGACCAC 60
||||||||||||||||||||||||||||||| | | |||||||||||| |||||||||
Sbjct 1 ATCAAAAACCAAACCAAACCCATAGGGTTGT-T-G---CTGTTCTGTTCCAATCGACCAC 55
Query 61 GGCGG 65
|||||
Sbjct 56 GGCGG 60
> Ahg919333 jgi|Araly1|919333|scaffold_100614.1
Length=659
Score = 431 bits (233), Expect = 5e-120
Identities = 496/623 (80%), Gaps = 18/623 (3%)
Strand=Plus/Plus
Query 163 ATGGCTTCAATCTCGACTTGGT-TCCGATACATGGCTCACAAGCTCGAGTATTCCCTCAC 221
||||| || ||| ||| || | |||||||||||||||||||||||||||| || |||||
Sbjct 22 ATGGCATCCATCACGAATT-ATGTCCGATACATGGCTCACAAGCTCGAGTACTCTCTCAC 80
Query 222 TCTCAGTCTCAAGAGTCATAGGAGTA-ATAAACTGAGTGACCGGGAACTTATTCAAATAA 280
|||||| ||||||| |||| || | | || || |||||||||||||| || |||
Sbjct 81 TCTCAGCCTCAAGAAACATACTAG-AGAGAAGCTCAGTGACCGGGAACTCCTTGGGATAG 139
Query 281 TC-TGCAAGAATCTGTTCTATGGGAA-AATAACCTACTTACACTCGGATAAAGGACCAGA 338
|| || |||||||| |||||| |||| |||||||||||||||||||||||||||| |||
Sbjct 140 TCATG-AAGAATCTATTCTAT-GGAAGGATAACCTACTTACACTCGGATAAAGGACAAGA 197
Query 339 AATGTCACCAACCATGACAGCAAATGAAAACACACTTCTTATTCGTAAGATACCAATTGC 398
||| | ||||| ||| | ||||||||||||| || ||| | |||||| | ||| |||
Sbjct 198 GATGGCCCCAACTATGGGAACAAATGAAAACACGCTACTTGTCCGTAAGCTGCCAGTTGT 257
Query 399 TAATACCAGGTTTGTATTCATTGGAGATGCTGTCGTCTTAAAGGATCCAAACGATTCAGA 458
| | || |||| | ||| |||| |||||||| ||||| ||||| || || || | |
Sbjct 258 TGACACAAGGTACATTTTCGTTGGGGATGCTGTTGTCTTCAAGGACCCGAATGAAAAAAA 317
Query 459 TAAGTATCTGGTAAGAAGATTAGCAGCTGTAGAAGGAT-TCGAAATGGTATCGGGTGATG 517
|||||| | || ||||||||||||||| |||| |||| | ||||||||||| ||||||
Sbjct 318 GAAGTATATAGTCAGAAGATTAGCAGCTTTAGAGGGATCT-GAAATGGTATCAAGTGATG 376
Query 518 AAAAAGAGGAGCCTTTTGTTCTTGAGAAGAATCAGTGTTGGGTAACAGCTGAAAACCAGG 577
||||| |||||||||||||| || ||| ||||||| ||||| |||||| ||||| |
Sbjct 377 GGAAAGATGAGCCTTTTGTTCTCGAAAAGGATCAGTGCTGGGTCGTAGCTGAGAACCAAG 436
Query 578 AGCTCAAAGCTAAGGAAGCATATGATAGTAGAACATTTGGTCC-AGTTTCAACAGCAGAC 636
|| | ||| |||||||||||||||||||| ||||||||||||| | |||| | || |||
Sbjct 437 AGATGAAATCTAAGGAAGCATATGATAGTCGAACATTTGGTCCGA-TTTCCATGGCGGAC 495
Query 637 ATTGTTGGAAGAGCTATATACTGTCTGAGAACAGCCGTCGATCACGGACCTGTTCGAAAC 696
|| || |||||||||||||| |||||||| ||||| || ||||| || || || | |||
Sbjct 496 ATAGTAGGAAGAGCTATATATTGTCTGAGGACAGCGGTGGATCATGGTCCAGTAAGCAAC 555
Query 697 AGCCAAACTGCAATGGGACAAGATTCTCCAATCCTGGCCGTGGAA-TTGGACGTGGACGA 755
|| || ||| |||| | | ||||||||||||||||| || ||| ||| ||||||| ||
Sbjct 556 AGTGAATTTGCCATGGAAGAGGATTCTCCAATCCTGGCGGTAGAACTTG-ACGTGGATGA 614
Query 756 GAT-GGCTAA-GAACCATAAGGC 776
|| |||||| || ||| |||||
Sbjct 615 -ATTGGCTAAAGA-CCACAAGGC 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36102402399
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5