BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31150.1
Length=2049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320865 jgi|Araly1|320865|fgenesh1_pm.C_scaffold_4000922 1223 0.0
Ahg951784 jgi|Araly1|951784|scaffold_16300003.1 1061 0.0
> Ahg320865 jgi|Araly1|320865|fgenesh1_pm.C_scaffold_4000922
Length=1191
Score = 1223 bits (662), Expect = 0.0
Identities = 885/985 (90%), Gaps = 45/985 (5%)
Strand=Plus/Plus
Query 1020 GCCATAGGAGAAATAATCCTGATTTCTCAAGAAACAATAAGCATGGTTTCCGAGGCAGAA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 GCCATAGGAGAAATAATCCTGATTTCTCAAGAAACAATAAGCATGGTTTCCGAGGCAGAA 274
Query 1080 ACAGGCGAAACGAAGATAAGGATGGTTTAGTAGATGGTGGTCTTGAAGACGACATGTTGT 1139
|||| ||||||||||||| |||||||||||||||||||||||| ||||||||||| || |
Sbjct 275 ACAGACGAAACGAAGATAGGGATGGTTTAGTAGATGGTGGTCTCGAAGACGACATTTTTT 334
Query 1140 C-------TTCCA----A----A--A-----AC-GA--GA-AA-GAGATAGTGGAGCTTT 1172
| ||||| | | | || || || || ||||||||||||||||
Sbjct 335 CCCCGAAATTCCAGGCTACTTCATCACCTGGACCGAAAGAGAAAGAGATAGTGGAGCTTT 394
Query 1173 TCAAGAAAGTCCAAGTTCAGCTCCGGGCTCGAGCTGCTGCTaagaaagaagaaaagaaga 1232
||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 TCAGGAAAGTTCAAGCTCAGCTCCGGGCTCGAGCTGCTGCTAAGAAAGAAGAAAAGAAGA 454
Query 1233 ctgaagaagCTTCTAAAGGACAGGGAGGAAAAGAGAGTGAGACAGTGGACTCCCTTCTTA 1292
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 455 CTGAAGAAGCTTCTAAAGGACAAGGAGGAAAAGATAGCGAGACAGTGGACTCCCTTCTTA 514
Query 1293 AGTTACTGAGGAAGCACTCAGGAGAACAAAGCAAGAAACAAGTTAGCAATTTCAATTCTG 1352
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 515 AGTTACTGAGGAAGCACTCAGGAGAACAAAGCAAAAAACAAGTTAGCAATTTTAATTCTG 574
Query 1353 AGAAGCAGCTCCAAAGAGATGATGATGCTTCAGAAAGACAAAATCACAGTTCCAGTCGTT 1412
| |||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 575 AAAAGCAGCTACAAAGAGATGATGATGCTTCAGAAAGACAAGATCACAGTTCCAATCGTT 634
Query 1413 TCGATTCGCGAAACAAAGATCATAATGCAACACCCTTTACCAGGCCAGCATCAAGCTTCA 1472
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 TTGATTCGCAAAACAAAGATCATAATGCAACACCCTTTACCAGGCCAGCATCAAGCTTCA 694
Query 1473 AACGTAATTCTCCTGTACCGAGACATAAATCTCAAGCCAGTTATTCTAGTGAGGCCATTT 1532
||| ||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 695 GACGCAATTCGCCTGTACCAAGACATAAATCCCAAGCCAGCTATTCTAGTGAGGCCATTT 754
Query 1533 TTGATGAAGCTTCAAGTTACAGTGTGACTTGGACCCAGAAAAAGGATCAAGTAGAGTCGC 1592
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 TTGATCAAGGTTCAAGTTACAGTGTGACTTGGACCCAGAAAAAGGATCAAGTAGAGTCGC 814
Query 1593 GTGATGAACCTGAATACGAGCCTGAGC------CTGAGTCTGCAGCTGAGTATGATGAAC 1646
||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||
Sbjct 815 GTGATGAACCTGAATACGAACCTGAGCATGAGTCTGAGTCTGCAGCTGGGTATGATGAAC 874
Query 1647 CTGAACCTGAGGCTGAGTATGAACCTGAATCTGAACCAGAACTTGCTATTCTCGAATCAG 1706
||||||| |||| |||||||||| ||||||||||||||| |||||||||||| || ||||
Sbjct 875 CTGAACCCGAGGGTGAGTATGAATCTGAATCTGAACCAGGACTTGCTATTCTAGATTCAG 934
Query 1707 TGTCAGAGCTGAAACTAGAGTCGTTTTACCAAGAGGAAGATGAAGATGA-G-G-AGGATC 1763
|||||||||| |||| ||| ||||||||||||||||| ||||||||||| | | ||||||
Sbjct 935 TGTCAGAGCTAAAACCAGAATCGTTTTACCAAGAGGAGGATGAAGATGAAGAGGAGGATC 994
Query 1764 ATAACTTCGTTATAGATGAGTTATCAGATGATGACGAGTCTCTCAATACCGACTACCGAG 1823
|| || |||| |||||||||||||||||||||||||||||||| ||| | | |||
Sbjct 995 ATGACGCCGTTGTAGATGAGTTATCAGATGATGACGAGTCTCTCGATA-----T-C-GAG 1047
Query 1824 GAAGAGACTGCGAAAGACGAAGATTTGAGTGCACTGAAGTTGGTAGAACTTAGAGCCATA 1883
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1048 GAAGAAACTGCGAAAGACGAAGATTTGAGTGCACTGAAGTTTGTAGAACTTAGAGCCATA 1107
Query 1884 GCAAAATCAAGAGGACTCAAAG-GAATTTCAAAGATGAAGAAAGTTGAGCTAGTGACTTT 1942
|||||| |||||||||| |||| || |||||||||| ||||||| ||| ||| ||| |||
Sbjct 1108 GCAAAAACAAGAGGACTTAAAGTGA-TTTCAAAGATAAAGAAAGCTGATCTACTGAATTT 1166
Query 1943 ATTGGGTAGTAGTAATAAAGCATGA 1967
||||||||||| ||||||| |||||
Sbjct 1167 ATTGGGTAGTAATAATAAATCATGA 1191
> Ahg951784 jgi|Araly1|951784|scaffold_16300003.1
Length=1294
Score = 1061 bits (574), Expect = 0.0
Identities = 783/875 (89%), Gaps = 49/875 (6%)
Strand=Plus/Plus
Query 1151 GAGAAAGAGATAGTGGAGCTTTTCAAGAAAGTCCAAGTTCAGCTCCGGGCTCGAGCTGCT 1210
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 429 GAGAAAGAGATAGTGGAGCTTTTCAGGAAAGTCCAAGCTCAGCTCCGGGCTCGAGCTGCT 488
Query 1211 GCTaagaaagaagaaaagaagactgaagaagCTTCTAAAGGAC-AGGGAGGAAAAGAGAG 1269
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct 489 GCTAAGAAAGAAGAAAAGAAGACTGAAGAAGCTTCTAAAGGACAAGGG-GGAAAAGATAG 547
Query 1270 TGAGACAGTGGACTCCCTTCTTAAGTTACTGAGGAAGCACTCAGGAGAACAAAGCAAGAA 1329
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 CGAGACAGTGGACTCCCTTCTTAAGTTACTGAGGAAGCACTCAGGAGAACAAAGCAAGAA 607
Query 1330 ACAAGTTAGCAATTTCAATTCTGAGAAGCAGCTCCAAAGAGATGATGATGCTTCAGAAAG 1389
||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 608 ACAAGTTAGCAATTTTAATTCTGAAAAGCAGCTACAAAGAGATGATGATGCTTCAGAAAG 667
Query 1390 ACAAAATCACAGTTCCAGTCGTTTCGATTCGCGAAACAAAGATCATAATGCAACACCCTT 1449
|||| |||||||||||| |||||| ||||||| |||||||||||||||||||||||||||
Sbjct 668 ACAAGATCACAGTTCCAATCGTTTTGATTCGCAAAACAAAGATCATAATGCAACACCCTT 727
Query 1450 TACCAGGCCAGCATCAAGCTTCAAACGTAATTCTCCTGTACCGAGACATAAATCTCAAGC 1509
||||||||||||||||||||||| ||| ||||| |||||||| ||||||||||| |||||
Sbjct 728 TACCAGGCCAGCATCAAGCTTCAGACGCAATTCGCCTGTACCAAGACATAAATCCCAAGC 787
Query 1510 CAGTTATTCTAGTGAGGCCATTTTTGATGAAGCTTCAAGTTACAGTGTGACTTGGACCCA 1569
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 788 CAGTTATTCTAGTGAGGCCATTTTTGATCAAGCTTCAAGTTACAGTGTGACTTGGACCCA 847
Query 1570 GAAAAAGGATCAAGTAGAGTCGCGTGATGAACCTGAATACGAGCCTGAGCCTGAGTCTGC 1629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 GAAAAAGGATCAAGTAGAGTCGCGTGATGAACCTGAATACGAGCCTGAGCCTGAGTCTGC 907
Query 1630 AGCTGAGTATGATGAACCTGAACCTGAG---GC---TGAGTATGA--A-CCTGAATCTGA 1680
||||||||||||||||||||| |||||| || ||||||||| | |||||| ||||
Sbjct 908 AGCTGAGTATGATGAACCTGAGCCTGAGTCTGCAGCTGAGTATGATGAACCTGAACCTGA 967
Query 1681 ACC--AG-A--ACT-TG---CT-A--------TT-CT---CGA-AT-CAGTGTCAGAGCT 1716
| || | | | || || | || || | | || |||||||||||||
Sbjct 968 GGCTGAGTATGAATCTGAATCTGAACCAGGACTTGCTATTCTAGATTCAGTGTCAGAGCT 1027
Query 1717 GAAACTAGAGTCGTTTTACCAAGAGGAAGATGAAGATGA-G-G-AGGATCATAACTTCGT 1773
|||| ||| ||||||||||||||||| ||||||||||| | | |||||||| || |||
Sbjct 1028 AAAACCAGAATCGTTTTACCAAGAGGAGGATGAAGATGAAGAGGAGGATCATGACGCCGT 1087
Query 1774 TATAGATGAGTTATCAGATGATGACGAGTCTCTCAATACCGACTACCGAGGAAGAGACTG 1833
| |||||||||||||||||||||||||||||||| ||| | | |||||||| ||||
Sbjct 1088 TGTAGATGAGTTATCAGATGATGACGAGTCTCTCGATA-----T-C-GAGGAAGAAACTG 1140
Query 1834 CGAAAGACGAAGATTTGAGTGCACTGAAGTTGGTAGAACTTAGAGCCATAGCAAAATCAA 1893
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1141 CGAAAGACGAAGATTTGAGTGCACTGAAGTTTGTAGAACTTAGAGCCATAGCAAAAACAA 1200
Query 1894 GAGGACTCAAAG-GAATTTCAAAGATGAAGAAAGTTGAGCTAGTGACTTTATTGGGTAGT 1952
||||||| |||| || |||||||||| ||||||| ||| ||| ||| |||||||||||||
Sbjct 1201 GAGGACTTAAAGTGA-TTTCAAAGATAAAGAAAGCTGATCTACTGAATTTATTGGGTAGT 1259
Query 1953 AGTAATAAAGCATGATGATCAGATTTTTAACATGA 1987
| ||||||| |||||||||||||||| |||||||
Sbjct 1260 AATAATAAATCATGATGATCAGATTT--AACATGA 1292
Score = 228 bits (123), Expect = 1e-58
Identities = 129/132 (98%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 1020 GCCATAGGAGAAATAATCCTGATTTCTCAAGAAACAATAAGCATGGTTTCCGAGGCAGAA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GCCATAGGAGAAATAATCCTGATTTCTCAAGAAACAATAAGCATGGTTTCCGAGGCAGAA 294
Query 1080 ACAGGCGAAACGAAGATAAGGATGGTTTAGTAGATGGTGGTCTTGAAGACGACATGTTGT 1139
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||
Sbjct 295 ACAGGCGAAACGAAGATAGGGATGGTTTAGTAGATGGTGGTCTCGAAGACGACATTTTGT 354
Query 1140 CTTCCAAAAACG 1151
||||||||||||
Sbjct 355 CTTCCAAAAACG 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77056565635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5