BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31160.1
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497295 jgi|Araly1|497295|fgenesh2_kg.163__1__AT2G31160.1 1399 0.0
Ahg344884 jgi|Araly1|344884|fgenesh1_pg.C_scaffold_4001226 1086 0.0
> Ahg497295 jgi|Araly1|497295|fgenesh2_kg.163__1__AT2G31160.1
Length=908
Score = 1399 bits (757), Expect = 0.0
Identities = 818/848 (96%), Gaps = 2/848 (0%)
Strand=Plus/Plus
Query 89 aaaaaTGGATATGATTCCCCAATTGATGGAAGGCTCTTCAGCTTACGGAGGTGTCACAAA 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 AAAAATGGATATGATTCCCCAATTGATGGAAGGCTCTTCAGCTTACGGAGGTGTCACAAA 121
Query 149 CCTCAACATCATCTCAAACAACTCCTCCTCCGTCACCGGAGCCACCGGAGGTGAAGCAAC 208
|||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 122 CCTCAACATCATCTCAGACAACTCCTCTTCCGTCACCGGAGCCACCGCAGGTGAAGCAAC 181
Query 209 GCAACCACTGTCTTCCTCCTCCTCACCATCGGCGAACTCAAGCCGTTACGAGAACCAGAA 268
||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 182 ACAACCACCGTCTTCTTCCTCCTCACCATCGGTGAACTCAAGCCGTTACGAGAACCAGAA 241
Query 269 GAGGAGAGACTGGAACACGTTCGGACAGTACTTAAGGAACCATCGGCCACCGCTTTCGCT 328
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 242 GAGGAGAGACTGGAACACGTTCGGGCAGTACTTAAGGAACCATCGGCCACCGCTTTCTCT 301
Query 329 TTCCCGATGCAGTGGAGCTCACGTGCTCGAGTTCCTCCGTTACTTGGACCAGTTCGGTAA 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TTCCCGATGCAGTGGAGCTCACGTGCTCGAGTTCCTCCGTTACTTGGACCAGTTCGGTAA 361
Query 389 GACAAAAGTCCACACGAACATTTGTCACTTCTATGGCCATCCTAATCCTCCGGCACCGTG 448
|||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 362 AACAAAAGTTCACACGAACGTTTGTCACTTCTACGGCCATCCTAATCCTCCGGCACCGTG 421
Query 449 TCCGTGTCCTCTCCGACAAGCTTGGGGAAGTCTTGACGCTCTTATCGGTCGTCTTCGAGC 508
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 422 TCCTTGTCCTCTCCGACAAGCTTGGGGAAGTCTTGACGCTCTCATCGGTCGTCTTCGAGC 481
Query 509 TGCCTTTGAGGAAAACGGAGGCAAGCCTGAGACGAATCCTTTTGGAGCTCGTGCCGTTAG 568
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TGCCTTTGAAGAAAACGGAGGCAAGCCTGAGACGAATCCTTTTGGAGCTCGTGCCGTTAG 541
Query 569 GCTTTATCTAAGGGAAGTTAGAGATATGCAGAGTAAAGCTAGAGGTGTTAGCTACGAGAA 628
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 542 GCTTTATCTAAGGGAAGTTAGAGATATGCAGAGCAAAGCTAGAGGTGTTAGCTACGAGAA 601
Query 629 GAAGAAGCGAAAGCGTCCTCTTCCTTCGTCGTCGACTTCTTCTTCCTCCGCCGTAGCTAG 688
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 602 GAAGAAGCGAAAGCGTCCTCTTCCTCCGTCGTCGGCTTCTTCTTCCTCCGCCGTAGCTAG 661
Query 689 CCACCAGCAATTTCAAATGCTACCGGGTACTAGTTCTACTACTCAATTAAAGTTTGAGAA 748
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 662 CCATCAGCAATTTCAAATGCTACCGAGTACTAGTTCTACTACTCAATTAAAGTTTGAGAA 721
Query 749 GTAAGTAATTATATAATTAAGAGAAATGGAGTATTTTATGTAATCTGAAATGTGATTTGG 808
|||||||||||||||||||||||||||| | ||||||||||||||| |||||||| | ||
Sbjct 722 GTAAGTAATTATATAATTAAGAGAAATGAAATATTTTATGTAATCTAAAATGTGAATGGG 781
Query 809 TCTCTTTCTTATATGTTGATTTTAATTTTAGGTTATGTGGTTCAGTTTTAGTTACTAGTG 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TCTCTTTCTTATATGTTGATTTTAATTTTAGGTTATGTGGTTCAGTTTTAGTTACTAGTG 841
Query 869 TATGCTGGGGGGAGGAAGGTAGGGTTTTCAATTTT-ATTTATATCTAATAAAAGAGAAAT 927
|||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 842 TATGTTGGGGA-AGGAAGGTAGGGTTTTCAATTTTTATTTATATCTAATAAAAGAGAAAT 900
Query 928 TCACATGT 935
||||||||
Sbjct 901 TCACATGT 908
Score = 108 bits (58), Expect = 9e-23
Identities = 60/61 (98%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 1 AACCGCACAAACAAAATTTCAGCTCCTCCATATCCATCAAGAAAGATCAAGAATCAAGAA 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AACCGCACAAACAAAATTTCAGCTCCTCCATATACATCAAGAAAGATCAAGAATCAAGAA 60
Query 61 C 61
|
Sbjct 61 C 61
> Ahg344884 jgi|Araly1|344884|fgenesh1_pg.C_scaffold_4001226
Length=717
Score = 1086 bits (588), Expect = 0.0
Identities = 634/657 (96%), Gaps = 0/657 (0%)
Strand=Plus/Plus
Query 93 ATGGATATGATTCCCCAATTGATGGAAGGCTCTTCAGCTTACGGAGGTGTCACAAACCTC 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATATGATTCCCCAATTGATGGAAGGCTCTTCAGCTTACGGAGGTGTCACAAACCTC 60
Query 153 AACATCATCTCAAACAACTCCTCCTCCGTCACCGGAGCCACCGGAGGTGAAGCAACGCAA 212
|||||||||||| |||||||||| ||||||||||||||||||| |||||||||||| |||
Sbjct 61 AACATCATCTCAGACAACTCCTCTTCCGTCACCGGAGCCACCGCAGGTGAAGCAACACAA 120
Query 213 CCACTGTCTTCCTCCTCCTCACCATCGGCGAACTCAAGCCGTTACGAGAACCAGAAGAGG 272
|||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 CCACCGTCTTCTTCCTCCTCACCATCGGTGAACTCAAGCCGTTACGAGAACCAGAAGAGG 180
Query 273 AGAGACTGGAACACGTTCGGACAGTACTTAAGGAACCATCGGCCACCGCTTTCGCTTTCC 332
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 181 AGAGACTGGAACACGTTCGGGCAGTACTTAAGGAACCATCGGCCACCGCTTTCTCTTTCC 240
Query 333 CGATGCAGTGGAGCTCACGTGCTCGAGTTCCTCCGTTACTTGGACCAGTTCGGTAAGACA 392
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 CGATGCAGTGGAGCTCACGTGCTCGAGTTCCTCCGTTACTTGGACCAGTTCGGTAAAACA 300
Query 393 AAAGTCCACACGAACATTTGTCACTTCTATGGCCATCCTAATCCTCCGGCACCGTGTCCG 452
||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 AAAGTTCACACGAACGTTTGTCACTTCTACGGCCATCCTAATCCTCCGGCACCGTGTCCT 360
Query 453 TGTCCTCTCCGACAAGCTTGGGGAAGTCTTGACGCTCTTATCGGTCGTCTTCGAGCTGCC 512
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 TGTCCTCTCCGACAAGCTTGGGGAAGTCTTGACGCTCTCATCGGTCGTCTTCGAGCTGCC 420
Query 513 TTTGAGGAAAACGGAGGCAAGCCTGAGACGAATCCTTTTGGAGCTCGTGCCGTTAGGCTT 572
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTGAAGAAAACGGAGGCAAGCCTGAGACGAATCCTTTTGGAGCTCGTGCCGTTAGGCTT 480
Query 573 TATCTAAGGGAAGTTAGAGATATGCAGAGTAAAGCTAGAGGTGTTAGCTACGAGAAGAAG 632
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 TATCTAAGGGAAGTTAGAGATATGCAGAGCAAAGCTAGAGGTGTTAGCTACGAGAAGAAG 540
Query 633 AAGCGAAAGCGTCCTCTTCCTTCGTCGTCGACTTCTTCTTCCTCCGCCGTAGCTAGCCAC 692
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||
Sbjct 541 AAGCGAAAGCGTCCTCTTCCTCCGTCGTCGGCTTCTTCTTCCTCCGCCGTAGCTAGTCAC 600
Query 693 CAGCAATTTCAAATGCTACCGGGTACTAGTTCTACTACTCAATTAAAGTTTGAGAAG 749
|||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 601 CAGCAATTTCAAATGCTATCGAGTACTAGTTCTACTTCTCAATTAAAGTTTGAGAAG 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34691854470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5