BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31170.1 Length=1925 Score E Sequences producing significant alignments: (Bits) Value Ahg482044 jgi|Araly1|482044|fgenesh2_kg.4__1104__AT2G31170.1 2747 0.0 Ahg887916 jgi|Araly1|887916|Al_scaffold_0163_1 381 1e-104 > Ahg482044 jgi|Araly1|482044|fgenesh2_kg.4__1104__AT2G31170.1 Length=1841 Score = 2747 bits (1487), Expect = 0.0 Identities = 1645/1721 (96%), Gaps = 12/1721 (1%) Strand=Plus/Plus Query 11 AGCTTATCGTTCCACACCAATGGCTTCTTCTGTCCTTAATCTCTTCAAATCATGTAGACC 70 |||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| Sbjct 1 AGCTTATCGTTCCACAGCAATGGCTTCTTCTGTTCTCAATCTCTTCAAATCATGTAGACC 60 Query 71 CTTCACTCCAATACGCTTCTCTTCTCTTCCCAAGTCTCAATTCAGAATCCAATTTCCCCT 130 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTTTACTCCAATACGCTTCTCTTCTCTTCCCAAGTCTCAATTCAGAATCCAATTTCCCCT 120 Query 131 CAGACCCGGAAAAGAAACTCAACTACGTCGCTGTTTCACGACTCTGTCATCATTAACGGA 190 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 121 CAGACCCGGAAAAGAAACTCAACCCCGTCGCTGTTTCACGACTCTATCATCATTAACGGA 180 Query 191 CGGTGGAGCACCAATTTCCGGTGGGAAGGAGCTGTGGCTGCACAACACGATGAGCCGGAA 250 ||||||||||||||||||||| | ||||||||| |||||| ||||||||||||||||||| Sbjct 181 CGGTGGAGCACCAATTTCCGGCGAGAAGGAGCTATGGCTGAACAACACGATGAGCCGGAA 240 Query 251 GAAGGAGCTGTTTAAGCCTAAGGTCGAAGGTAAAGTTGGAATGTACGTTTGCGGTGTCAC 310 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 241 GAAGGAGCTGTTTAAGCCTAAGATCGAAGGTAAAGTTGGAATGTACGTTTGCGGTGTCAC 300 Query 311 TGCTTACGATCTCAGTCACATTGGACACGCACGAGTCTACGTCACTTTCGATGTACTCTT 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 301 TGCTTACGATCTCAGTCACATTGGACACGCACGAGTCTACGTCACTTTCGATGTTCTCTT 360 Query 371 GAGGTACCTTAAGCATCTAGGATATGAAGTGTCTTACGTTCGAAATTTCACGGATGTGGA 430 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 361 GAGGTACCTTAAGCATCTAGGATATGAAGTGTCGTATGTTCGAAATTTCACGGATGTGGA 420 Query 431 TGACAAGATTATTGCCAGAGCGAAAGAATTAG-AGGAAGATCCAATCAGTTTGAGCAGAC 489 ||| ||||| |||||| ||||||| ||||||| || |||||||||||||||||||||||| Sbjct 421 TGATAAGATAATTGCCCGAGCGAATGAATTAGGAG-AAGATCCAATCAGTTTGAGCAGAC 479 Query 490 GTTTCTGTGAGGAATTTAATCGAGATATGGAACAGCTTCAATGTTTAGATCCGTCTGTCC 549 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 480 GATTCTGTGAGGAATTTAATCGAGATATGGAACAGCTTCAATGTTTAGATCCTTCTGTCC 539 Query 550 AACCACGAGTTTCAGATCATATACCTCAAATCATCGACCTGATCAAGCAGATTCTTGATA 609 ||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 540 AACCACGCGTCTCAGATCATATACCTCAAATCATTGACCTGATCAAGCAGATTCTTGATA 599 Query 610 ATGGCTATGCCTACAAAGTTGATGGAGACATTTACTTCTCAGTCGACAAATTTCCAACAT 669 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 600 ATGGTTATGCCTACAAAGTGGATGGAGACATTTACTTCTCAGTCGACAAATTTCCAACAT 659 Query 670 ATGGAAAATTGTCTGGGCGAAAATTAGAAGATAACCGTGCAGGTGAGAGAGTCGCAGTTG 729 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| | Sbjct 660 ATGGAAAATTGTCTGGGCGAAAATTGGAAGATAACCGTGCAGGTGAGAGAGTTGCAGTAG 719 Query 730 ACACGAGGAAGAAACATCCCGCAGATTTTGCTCTGTGGAAAGCTGCAAAAGAAGGGGAAC 789 |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 720 ACACAAGGAAGAAACATCCTGCAGATTTTGCTCTGTGGAAAACTGCAAAAGAAGGGGAAC 779 Query 790 CCTTTTGGGAGAGTCCGTGGGGAAGAGGAAGGCCCGGTTGGCACATAGAGTGCAGTGCGA 849 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 780 CCTTTTGGGAGAGTCCATGGGGAAGAGGAAGGCCCGGTTGGCACATAGAATGCAGTGCGA 839 Query 850 TGAGCGCGGCTTATCTCGGTTATAGTTTTGACATACATGGTGGCGGAATGGATCTTGTGT 909 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 840 TGAGCGCAGCTTATCTCGGTTATAGTTTTGACATACATGGTGGAGGAATGGATCTTGTGT 899 Query 910 TCCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCATGTGATAGCAGCAACATTA 969 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 900 TCCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCTTGTGATAGCAGCAACATCA 959 Query 970 GCTATTGGATCCATAATGGTTTTGTTACTGTTGACTCCGAGAAGATGTCAAAATCCTTGG 1029 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 960 GCTATTGGATCCATAATGGTTTTGTTACTGTTGACTCTGAGAAGATGTCAAAATCCTTGG 1019 Query 1030 GGAATTTCTTCACTATCAGACAGGTTATAGACCTTTATCATCCTCTTGCTCTGAGACTTT 1089 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 GGAATTTCTTCACAATCAGACAGGTTATAGACCTTTATCATCCTCTTGCTCTGAGACTTT 1079 Query 1090 TCCTAATGGGAACTCATTATCGGTCTCCTATCAATTACTCCGATTTCCTCCTCGAGAGTG 1149 | |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 1080 TTCTAATGGGAACTCACTATCGATCTCCTATCAATTACTCGGATTTCCTCCTCGAGAGTG 1139 Query 1150 CTTCGGAGCGCATTTTTTATATTTATCAGACGTTACACGACTGTGAAAGCGCTTT-AGGC 1208 |||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| Sbjct 1140 CTTCGGAGCGCATTTTTTATATTTATCAGACGTTGCACGACTGTGAAAGC-CTTTTAGGA 1198 Query 1209 GAGAAAGATTCGACATTTGAG-AATGGTTCTGTTCCTTCAGACACTTTGACAAGCATCAA 1267 |||| |||||||||||||| | |||| |||||||||||||||||||||||||| |||||| Sbjct 1199 GAGAGAGATTCGACATTTG-GCAATGATTCTGTTCCTTCAGACACTTTGACAACCATCAA 1257 Query 1268 CACATTCCGTACTGAATTTGTCGCCTCGATGTCTGATGATCTTCTCACACCTGTAACTCT 1327 |||||||| || ||||||||| |||||||||||||||||||| |||||||||||||| || Sbjct 1258 CACATTCCATAGTGAATTTGTGGCCTCGATGTCTGATGATCTCCTCACACCTGTAACCCT 1317 Query 1328 GGCTGCAATGTCAGAACCACTGAAAACTATCAACGATCTCATTCACACCCGAAAGGGGAA 1387 ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || Sbjct 1318 GGCTGCAATGTCAGAACCATTGAAAACTATCAACGATATCATTCACACCCGAAAGGG-AA 1376 Query 1388 AAAA-CAAGCAAGAAGAGAAGAGTCACTTAAGGCTCTAGAGACAACAATCAGAGATGTTC 1446 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1377 AAAAGCAAGCAAGAAGAGAAGAGTCACTTAAGGCTCTGGAGACAACAATCAGAGATGTTC 1436 Query 1447 TTACTATCTTAGGGCTTATGCCCACAAGTTACTCAGAGGTTCTCGAGCAGCTAAAAGAGA 1506 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1437 TTACTATCTTAGGGCTTATGCCCACAAGTTACTCAGAGGTTCTTGAGCAGCTAAAAGAGA 1496 Query 1507 AGGCACTAAAGCGAGCTGGACTAAAAGAGGAAGATGTGTTGCAGAGAGTGCAAGAGAGAA 1566 | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1497 AAGCACTAAAGCGAGCTGGACTAGAAGAGGAAGATGTGTTGCAGAGAGTGCAAGAGAGAA 1556 Query 1567 CAGACGCAAGGAAGAATAAAGAATACGAAAGATCTGATGCAATTAGGAAAGATTTGGCAA 1626 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1557 CAGACGCAAGGAAAAATAAAGAATACGAAAGATCTGATGCAATTAGGAAAGATTTGGCAA 1616 Query 1627 AAGTTGGGATCGCTTTGATGGATAGTCCTGAGGGAACAACTTGGAGACCAGCCATTCCTC 1686 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1617 GTGTTGGGATCGCTTTGATGGATAGTCCTGAGGGAACAACTTGGAGACCAGCCATTCCTC 1676 Query 1687 TTGCACTTCAAGAACCTGTAACTACTACACCTTGAGTTTTT 1727 |||| |||||||||||||||||||| || | |||| ||||| Sbjct 1677 TTGCCCTTCAAGAACCTGTAACTAC-AC-C-TTGA-TTTTT 1713 > Ahg887916 jgi|Araly1|887916|Al_scaffold_0163_1 Length=234 Score = 381 bits (206), Expect = 1e-104 Identities = 220/227 (97%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 1485 GTTCTCGAGCAGCTAAAAGAGAAGGCACTAAAGCGAGCTGGACTAAAAGAGGAAGATGTG 1544 ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 1 GTTCTTGAGCAGCTAAAAGAGAAAGCACTAAAGCGAGCTGGACTAGAAGAGGAAGATGTG 60 Query 1545 TTGCAGAGAGTGCAAGAGAGAACAGACGCAAGGAAGAATAAAGAATACGAAAGATCTGAT 1604 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 TTGCAGAGAGTGCAAGAGAGAACAGACGCAAGGAAAAATAAAGAATACGAAAGATCTGAT 120 Query 1605 GCAATTAGGAAAGATTTGGCAAAAGTTGGGATCGCTTTGATGGATAGTCCTGAGGGAACA 1664 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 121 GCAATTAGGAAAGATTTGGCAAGTGTTGGGATCGCTTTGATGGATAGTCCTGAGGGAACA 180 Query 1665 ACTTGGAGACCAGCCATTCCTCTTGCACTTCAAGAACCTGTAACTAC 1711 |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 181 ACTTGGAGACCAGCCATTCCTCTTGCCCTTCAAGAACCTGTAACTAC 227 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72333375255 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5