BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31170.1
Length=1925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482044 jgi|Araly1|482044|fgenesh2_kg.4__1104__AT2G31170.1 2747 0.0
Ahg887916 jgi|Araly1|887916|Al_scaffold_0163_1 381 1e-104
> Ahg482044 jgi|Araly1|482044|fgenesh2_kg.4__1104__AT2G31170.1
Length=1841
Score = 2747 bits (1487), Expect = 0.0
Identities = 1645/1721 (96%), Gaps = 12/1721 (1%)
Strand=Plus/Plus
Query 11 AGCTTATCGTTCCACACCAATGGCTTCTTCTGTCCTTAATCTCTTCAAATCATGTAGACC 70
|||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||
Sbjct 1 AGCTTATCGTTCCACAGCAATGGCTTCTTCTGTTCTCAATCTCTTCAAATCATGTAGACC 60
Query 71 CTTCACTCCAATACGCTTCTCTTCTCTTCCCAAGTCTCAATTCAGAATCCAATTTCCCCT 130
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTACTCCAATACGCTTCTCTTCTCTTCCCAAGTCTCAATTCAGAATCCAATTTCCCCT 120
Query 131 CAGACCCGGAAAAGAAACTCAACTACGTCGCTGTTTCACGACTCTGTCATCATTAACGGA 190
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 121 CAGACCCGGAAAAGAAACTCAACCCCGTCGCTGTTTCACGACTCTATCATCATTAACGGA 180
Query 191 CGGTGGAGCACCAATTTCCGGTGGGAAGGAGCTGTGGCTGCACAACACGATGAGCCGGAA 250
||||||||||||||||||||| | ||||||||| |||||| |||||||||||||||||||
Sbjct 181 CGGTGGAGCACCAATTTCCGGCGAGAAGGAGCTATGGCTGAACAACACGATGAGCCGGAA 240
Query 251 GAAGGAGCTGTTTAAGCCTAAGGTCGAAGGTAAAGTTGGAATGTACGTTTGCGGTGTCAC 310
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGGAGCTGTTTAAGCCTAAGATCGAAGGTAAAGTTGGAATGTACGTTTGCGGTGTCAC 300
Query 311 TGCTTACGATCTCAGTCACATTGGACACGCACGAGTCTACGTCACTTTCGATGTACTCTT 370
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 TGCTTACGATCTCAGTCACATTGGACACGCACGAGTCTACGTCACTTTCGATGTTCTCTT 360
Query 371 GAGGTACCTTAAGCATCTAGGATATGAAGTGTCTTACGTTCGAAATTTCACGGATGTGGA 430
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 361 GAGGTACCTTAAGCATCTAGGATATGAAGTGTCGTATGTTCGAAATTTCACGGATGTGGA 420
Query 431 TGACAAGATTATTGCCAGAGCGAAAGAATTAG-AGGAAGATCCAATCAGTTTGAGCAGAC 489
||| ||||| |||||| ||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 421 TGATAAGATAATTGCCCGAGCGAATGAATTAGGAG-AAGATCCAATCAGTTTGAGCAGAC 479
Query 490 GTTTCTGTGAGGAATTTAATCGAGATATGGAACAGCTTCAATGTTTAGATCCGTCTGTCC 549
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 480 GATTCTGTGAGGAATTTAATCGAGATATGGAACAGCTTCAATGTTTAGATCCTTCTGTCC 539
Query 550 AACCACGAGTTTCAGATCATATACCTCAAATCATCGACCTGATCAAGCAGATTCTTGATA 609
||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 AACCACGCGTCTCAGATCATATACCTCAAATCATTGACCTGATCAAGCAGATTCTTGATA 599
Query 610 ATGGCTATGCCTACAAAGTTGATGGAGACATTTACTTCTCAGTCGACAAATTTCCAACAT 669
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATGGTTATGCCTACAAAGTGGATGGAGACATTTACTTCTCAGTCGACAAATTTCCAACAT 659
Query 670 ATGGAAAATTGTCTGGGCGAAAATTAGAAGATAACCGTGCAGGTGAGAGAGTCGCAGTTG 729
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 660 ATGGAAAATTGTCTGGGCGAAAATTGGAAGATAACCGTGCAGGTGAGAGAGTTGCAGTAG 719
Query 730 ACACGAGGAAGAAACATCCCGCAGATTTTGCTCTGTGGAAAGCTGCAAAAGAAGGGGAAC 789
|||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 720 ACACAAGGAAGAAACATCCTGCAGATTTTGCTCTGTGGAAAACTGCAAAAGAAGGGGAAC 779
Query 790 CCTTTTGGGAGAGTCCGTGGGGAAGAGGAAGGCCCGGTTGGCACATAGAGTGCAGTGCGA 849
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 780 CCTTTTGGGAGAGTCCATGGGGAAGAGGAAGGCCCGGTTGGCACATAGAATGCAGTGCGA 839
Query 850 TGAGCGCGGCTTATCTCGGTTATAGTTTTGACATACATGGTGGCGGAATGGATCTTGTGT 909
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 840 TGAGCGCAGCTTATCTCGGTTATAGTTTTGACATACATGGTGGAGGAATGGATCTTGTGT 899
Query 910 TCCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCATGTGATAGCAGCAACATTA 969
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 900 TCCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCTTGTGATAGCAGCAACATCA 959
Query 970 GCTATTGGATCCATAATGGTTTTGTTACTGTTGACTCCGAGAAGATGTCAAAATCCTTGG 1029
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 960 GCTATTGGATCCATAATGGTTTTGTTACTGTTGACTCTGAGAAGATGTCAAAATCCTTGG 1019
Query 1030 GGAATTTCTTCACTATCAGACAGGTTATAGACCTTTATCATCCTCTTGCTCTGAGACTTT 1089
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GGAATTTCTTCACAATCAGACAGGTTATAGACCTTTATCATCCTCTTGCTCTGAGACTTT 1079
Query 1090 TCCTAATGGGAACTCATTATCGGTCTCCTATCAATTACTCCGATTTCCTCCTCGAGAGTG 1149
| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1080 TTCTAATGGGAACTCACTATCGATCTCCTATCAATTACTCGGATTTCCTCCTCGAGAGTG 1139
Query 1150 CTTCGGAGCGCATTTTTTATATTTATCAGACGTTACACGACTGTGAAAGCGCTTT-AGGC 1208
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||
Sbjct 1140 CTTCGGAGCGCATTTTTTATATTTATCAGACGTTGCACGACTGTGAAAGC-CTTTTAGGA 1198
Query 1209 GAGAAAGATTCGACATTTGAG-AATGGTTCTGTTCCTTCAGACACTTTGACAAGCATCAA 1267
|||| |||||||||||||| | |||| |||||||||||||||||||||||||| ||||||
Sbjct 1199 GAGAGAGATTCGACATTTG-GCAATGATTCTGTTCCTTCAGACACTTTGACAACCATCAA 1257
Query 1268 CACATTCCGTACTGAATTTGTCGCCTCGATGTCTGATGATCTTCTCACACCTGTAACTCT 1327
|||||||| || ||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 1258 CACATTCCATAGTGAATTTGTGGCCTCGATGTCTGATGATCTCCTCACACCTGTAACCCT 1317
Query 1328 GGCTGCAATGTCAGAACCACTGAAAACTATCAACGATCTCATTCACACCCGAAAGGGGAA 1387
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1318 GGCTGCAATGTCAGAACCATTGAAAACTATCAACGATATCATTCACACCCGAAAGGG-AA 1376
Query 1388 AAAA-CAAGCAAGAAGAGAAGAGTCACTTAAGGCTCTAGAGACAACAATCAGAGATGTTC 1446
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1377 AAAAGCAAGCAAGAAGAGAAGAGTCACTTAAGGCTCTGGAGACAACAATCAGAGATGTTC 1436
Query 1447 TTACTATCTTAGGGCTTATGCCCACAAGTTACTCAGAGGTTCTCGAGCAGCTAAAAGAGA 1506
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1437 TTACTATCTTAGGGCTTATGCCCACAAGTTACTCAGAGGTTCTTGAGCAGCTAAAAGAGA 1496
Query 1507 AGGCACTAAAGCGAGCTGGACTAAAAGAGGAAGATGTGTTGCAGAGAGTGCAAGAGAGAA 1566
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1497 AAGCACTAAAGCGAGCTGGACTAGAAGAGGAAGATGTGTTGCAGAGAGTGCAAGAGAGAA 1556
Query 1567 CAGACGCAAGGAAGAATAAAGAATACGAAAGATCTGATGCAATTAGGAAAGATTTGGCAA 1626
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CAGACGCAAGGAAAAATAAAGAATACGAAAGATCTGATGCAATTAGGAAAGATTTGGCAA 1616
Query 1627 AAGTTGGGATCGCTTTGATGGATAGTCCTGAGGGAACAACTTGGAGACCAGCCATTCCTC 1686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 GTGTTGGGATCGCTTTGATGGATAGTCCTGAGGGAACAACTTGGAGACCAGCCATTCCTC 1676
Query 1687 TTGCACTTCAAGAACCTGTAACTACTACACCTTGAGTTTTT 1727
|||| |||||||||||||||||||| || | |||| |||||
Sbjct 1677 TTGCCCTTCAAGAACCTGTAACTAC-AC-C-TTGA-TTTTT 1713
> Ahg887916 jgi|Araly1|887916|Al_scaffold_0163_1
Length=234
Score = 381 bits (206), Expect = 1e-104
Identities = 220/227 (97%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 1485 GTTCTCGAGCAGCTAAAAGAGAAGGCACTAAAGCGAGCTGGACTAAAAGAGGAAGATGTG 1544
||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1 GTTCTTGAGCAGCTAAAAGAGAAAGCACTAAAGCGAGCTGGACTAGAAGAGGAAGATGTG 60
Query 1545 TTGCAGAGAGTGCAAGAGAGAACAGACGCAAGGAAGAATAAAGAATACGAAAGATCTGAT 1604
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TTGCAGAGAGTGCAAGAGAGAACAGACGCAAGGAAAAATAAAGAATACGAAAGATCTGAT 120
Query 1605 GCAATTAGGAAAGATTTGGCAAAAGTTGGGATCGCTTTGATGGATAGTCCTGAGGGAACA 1664
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GCAATTAGGAAAGATTTGGCAAGTGTTGGGATCGCTTTGATGGATAGTCCTGAGGGAACA 180
Query 1665 ACTTGGAGACCAGCCATTCCTCTTGCACTTCAAGAACCTGTAACTAC 1711
|||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 ACTTGGAGACCAGCCATTCCTCTTGCCCTTCAAGAACCTGTAACTAC 227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72333375255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5