BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31180.1
Length=836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900923 jgi|Araly1|900923|Al_scaffold_0004_1573 1138 0.0
> Ahg900923 jgi|Araly1|900923|Al_scaffold_0004_1573
Length=753
Score = 1138 bits (616), Expect = 0.0
Identities = 711/756 (94%), Gaps = 9/756 (1%)
Strand=Plus/Plus
Query 2 ATGGGAAGAGCACCATGTTGTGAGAAAATGGGGGTGAAGAGAGGACCATGGACTCCTGAA 61
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGAGCACCATGTTGCGAGAAAATGGGGATGAAGAGAGGACCATGGACTCCTGAA 60
Query 62 GAAGATCAAATCTTGATCAATTATATTCATCTTTATGGTCATTCTAATTGGCGAGCTCTC 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGATCAAATCTTGATCAATTATATTCATCTTTATGGTCATTCTAATTGGCGAGCTCTC 120
Query 122 CCAAAACACGCAGGTTTACTTAGATGTGGGAAAAGTTGCAGACTTCGTTGGATCAATTAT 181
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCAAAACACGCAGGTTTACTTCGATGTGGGAAAAGTTGCAGACTTCGTTGGATCAATTAT 180
Query 182 CTTAGACCAGACATTAAACGTGGCAATTTCACTCCTCAAGAAGAACAAACTATTATCAAT 241
|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CTGAGGCCAGACATTAAACGTGGCAATTTCACTCCTCAAGAAGAACAAACTATCATCAAT 240
Query 242 CTGCATGAAAGCTTAGGCAACAGATGGTCTGCGATTGCTGCAAAATTGCCGGGACGAACC 301
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 TTGCATGAAAGCTTAGGCAACAGATGGTCTGCGATTGCTGCAAAGTTGCCGGGACGAACC 300
Query 302 GACAATGAAATAAAAAATGTTTGGCACACTCATTTGAAGAAAAGACTCAGCAAAAATCT- 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 301 GACAATGAAATAAAAAATGTTTGGCACACTCATTTGAAGAAAAGAATCAGCAAAAATATT 360
Query 361 -AAA-CAATGGCGGAGACACCAAAGACGTTAACGGAATTAACGAGACCACAAATGAAGAC 418
||| |||||||||||||||||||||| |||||||||||||||||||| || | | ||||
Sbjct 361 CAAAACAATGGCGGAGACACCAAAGACATTAACGGAATTAACGAGACCGCACACGTAGAC 420
Query 419 AAAGGATCTGTGATAGTCGACACAGCCTCTTTACAACAATTTTCTAATAGTATTACAACA 478
|||| ||| ||||| ||||||||||||||| ||||||||||||||| ||||||||| |||
Sbjct 421 AAAGAATCGGTGATTGTCGACACAGCCTCTCTACAACAATTTTCTAGTAGTATTACGACA 480
Query 479 TTTGATATTTCAAATGATAACAAGGACGATATTATGTCGTACGAGGATATTTCTGCCTTG 538
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 481 TTTGATATTTCAAATGATAGCAAGGACGATGTTATGTCGTACGAGGATATTTCTGCCTTG 540
Query 539 ATAGATGATAGTTTTTGGTCGGACGTCATATCGGTAGATAA-TTCGAATAAG-AATGAGA 596
||| ||||||||||||||||||||||| |||| |||||||| ||| || | | |||||||
Sbjct 541 ATAAATGATAGTTTTTGGTCGGACGTCGTATCAGTAGATAACTTC-AACA-GCAATGAGA 598
Query 597 AGAAGATAGAGGATTGGGAAGGATTGATCGATA-GAAATAGTAAAAAATGTAGCTATAGT 655
|||| ||||||||||||||||| |||||||||| ||| |||| ||||||||||||| |
Sbjct 599 AGAAAATAGAGGATTGGGAAGGGTTGATCGATAAGAAGG-GTAAGAAATGTAGCTATAAT 657
Query 656 AATTCTAAGTTGTATAATGATGACATGGAGTTTTGGTTTGATGTTTTCACTAGTAATCGT 715
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 658 AATTCGAAGTTGTATAATGATGACATGGAGTTTTGGTTTGAGGTTTTCACTAGTAATCGT 717
Query 716 AGAATTGAGGAATTTTCCGACATACCCGAgttttaa 751
|||||||||||||||||||||||||| |||||||||
Sbjct 718 AGAATTGAGGAATTTTCCGACATACCAGAGTTTTAA 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30917685687
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5