BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31190.1
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482047 jgi|Araly1|482047|fgenesh2_kg.4__1107__AT2G31190.1 1487 0.0
> Ahg482047 jgi|Araly1|482047|fgenesh2_kg.4__1107__AT2G31190.1
Length=1560
Score = 1487 bits (805), Expect = 0.0
Identities = 907/957 (95%), Gaps = 4/957 (0%)
Strand=Plus/Plus
Query 1 GGCGATTACTGTTGTGGTGGTTCACTCCAACTCCGGCGACTCTTAACGTTCGGAACCTGA 60
|||||||||||||| || ||||||||| |||||||||||||| |||||| | |||||||
Sbjct 1 GGCGATTACTGTTGCGGCGGTTCACTCGAACTCCGGCGACTC-CAACGTTAGAAACCTGA 59
Query 61 CTGTGCCATCGTGTCTCAGAGATGCAGTTTCTTCAGGAGAAGGTGAAGTTGATAAAGAAG 120
||| ||| |||| ||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct 60 CTGAGCCGTCGTCTCTCAGATATGCAGTTTC-T--GGAGAAGGTGAAGTTGATAAAGAAG 116
Query 121 GAAGACCCAGTAATGTTGAAGAGCCCTGAAGACTTTCCGGTTTACTGGTTCGAAACCTCT 180
||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 117 GAAGAGCCAGTAATGGTGAAGAACCCTGAAGACTTTCCGGTTTACTGGTTCGAAACCTCT 176
Query 181 GATTCTGTCTCTCACCGTTATCAGTTCCAATCCGACGGCCACCTCTCTATGAAAGTTGTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GATTCTGTCTCTCACCGTTATCAGTTCCAATCCGACGGCCACCTCTCTATGAAAGTTGTT 236
Query 241 GATGATGCAAGACCTGTTCCTCAGAAGATGGTTGAATCTTTCCTTAACAAGTTCTTTCCT 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 237 GATGATGCAAGACCTGTTCCTCAGAAGATGGTTGAATCCTTCCTTAACAAGTTCTTCCCT 296
Query 301 TCTGGTTATCCATACAGTGTCAACGAAGGATATCTTAGGTACACACAGTTTCGAGCACTT 360
|||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 297 TCTGGTTATCCATACAGTGTAAACGAAGGATATCTTAGGTACACTCAATTTCGAGCACTT 356
Query 361 CAGCATTTCTCTAGTGCAGCATTATCAGTGTTATCGACTCAGTCACTGTTGTTTGCTGCA 420
||||||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||
Sbjct 357 CAGCATTTCTCCAGTGCAGCATTATCCGTGTTATCGACGCAGTCACTGCTGTTTGCTGCA 416
Query 421 GGCTTGCGGCCTACACCGGCACAAGCAACTGTTGTTAGCTGGATATTGAAGGATGGGATG 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGCTTGCGGCCTACACCGGCTCAAGCAACTGTTGTTAGCTGGATATTGAAGGATGGGATG 476
Query 481 CAACATGTCGGAAAGCTAATATGTAGCAATTTGGGTGCAAGAATGGACTCTGAGCCTAAA 540
|| ||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 477 CAGCATGTGGGAAAGCTGATTTGTAGCAATTTGGGTGCAAGAATGGATTCTGAGCCTAAA 536
Query 541 CGGTGGAGGATTCTGGCTGACGTGCTTTACGATCTTGGTACTGGTCTGGAACTCGTTTCT 600
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 537 CGGTGGAGAATTCTGGCTGACGTGCTCTACGATCTTGGTACTGGTCTGGAACTTGTTTCT 596
Query 601 CCATTATGCCCGCATCTGTTTCTTGAAATGGCTGGTCTGGGGAATTTTGCTAAGGGAATG 660
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 597 CCATTATGCCCGCATCTGTTTCTTGAAATGGCTGGTCTTGGGAATTTCGCTAAGGGAATG 656
Query 661 GCTACAGTTGCAGCAAGGGCAACAAGATTACCAATATATTCATCTTTTGCCAAAGAAGGA 720
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 657 GCTACGGTTGCAGCAAGGGCAACAAGATTACCAATCTATTCATCTTTCGCCAAAGAAGGA 716
Query 721 AATCTTAGTGACATTTTTGCAAAAGGAGAAGCTATCTCTACTCTTTTCAATGTTGCCGGG 780
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 717 AATCTTAGTGACATTTTTGCAAAAGGAGAAGCTATCTCTACTCTTTTTAATGTTGCGGGG 776
Query 781 ATAGGTGCTGGTATTCAACTTGCGTCCACAATATGTTCATCAATGGAGGGAAAGTTGGTG 840
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 777 ATAGGTGCTGGGATTCAACTTGCGTCAACAATATGTTCATCAATGGAGGGAAAGTTGGTG 836
Query 841 GTTGGGTCAATTCTTTCGGTTGTACATGTGTATAGCGTTGTAGAACAAATGCGAGGGGTA 900
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 837 GTTGGGTCGATTCTTTCGGTTGTACATGTGTATAGCGTTGTAGAACAAATGCGAGGAGTA 896
Query 901 CCAATCAACACACTGAATCCACAGCGAACCGCTTTGATTGTGGCTAATTTTCTCAAG 957
|| ||||||||||||||||||||| ||||||||||||| |||||||||| |||||||
Sbjct 897 CCTATCAACACACTGAATCCACAGAGAACCGCTTTGATCGTGGCTAATTATCTCAAG 953
Score = 955 bits (517), Expect = 0.0
Identities = 567/590 (96%), Gaps = 7/590 (1%)
Strand=Plus/Plus
Query 1016 AGAGACCAATCCAAGACGCAGGAAATGTAAAAGTGGGAAGGGCTCTCCATAAAGCTGTGA 1075
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 973 AGAGACCAATCCAAGACGCAGGAAACGTAAAAGTGGGAAGGGCTCTCCATAAAGCTGTGA 1032
Query 1076 AGCCTTCTGAGGTACAAAGACTAAAACAAGTGTTTGTAGAAGAGAAGTTTCTATTGAGTC 1135
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 AGCCTTCTGAGGTGCAGAGACTAAAACAAGTGTTTGTAGAAGAGAAGTTTCTATTGAGTC 1092
Query 1136 ATGGAAAGTCATGGACCGATATGGTCTTAGAGCACGATGCAACCGGTGAAGATGCATTGC 1195
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1093 ATGGAAAGTCATGGACCGATATGGTCTTAGAGCACGATGCAACTGGTGAAGACGCATTGC 1152
Query 1196 GAGGGTGGTTAGTTGCAGCATATGTCAAGTCAATGACAAAGATATATAATGACCCTGATG 1255
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1153 GAGGGTGGTTAGTTGCAGCATATGCCAAGTCAATGACAAAGATATACAATGACCCTGATG 1212
Query 1256 ACATTATATTGCAAGACGCGTATGACAAAATGAACGATGTCTTCAATCCATTTTTATCTC 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 ACATTATATTGCAAGACGCGTATGACAAAATGAACGATGTCTTCAATCCATTTTTATCTC 1272
Query 1316 AAGTGCAAGCTAAAGGATGGTATACTGATAGATTTCTCGATGGCACGGGGACAAGATTTG 1375
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1273 AAGTGCAGGCTAAAGGATGGTATACTGATAGATTTCTCGATGGCACGGGAACAAGATTCG 1332
Query 1376 CTTGGTAGCTCCCGAGTTTCGAGTAATT-TT--GCTATTGTAATTTTTTATTGTTTCAAG 1432
|||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||
Sbjct 1333 CTTGGTAGCTCCGGAGTTTCGAGTAATTCTTTTGCTATTGTAATTTTT-ATTGTTTCAAG 1391
Query 1433 TATAAACACGAATTTGTAGGCGTAAGAAGTCTTTATCCAGATCATGAATCCACAATCTAG 1492
| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||
Sbjct 1392 TGTAAACACGAATTTGTAGGCTTAAGAAGTCTTTGTCCAGATCATGAATCCACAATCCAG 1451
Query 1493 TACTTTGAAGACTT-AGATGGATTAGATTAGAGTGAGATTGTTAGGTGAAACAAAAGTTT 1551
| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1452 TT-TTTGAAGACTTTAGATGGAT-AGATTAGAGTGAGATTGTTAGGTGAAACAAAAGTTT 1509
Query 1552 GAAGGTACGGTTCTTGTCCTCGTTTGTACTTTTGTTTTGCCATTGTAAGT 1601
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1510 GAAGGTACGGTTCTTGTCCTCGTTTGTACTTTTGTTTTGCCATTGTAAGT 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60525399305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5