BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G31200.1

Length=1088
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933658 jgi|Araly1|933658|scaffold_401646.1                        713    0.0  


> Ahg933658 jgi|Araly1|933658|scaffold_401646.1
Length=481

 Score =  713 bits (386),  Expect = 0.0
 Identities = 441/468 (94%), Gaps = 1/468 (0%)
 Strand=Plus/Plus

Query  174  AGAATCAAATCCATGTCTTTCAGAGGACTTAGCAGGCCAAATGCAATATCTGGAATGGGT  233
            |||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  10   AGAA-CAAATCAATGTCTTTCAGAGGACTTAGCAGGCCAAATGCAACATCTGGAATGGGT  68

Query  234  GTTGCAGATGAGAGCAAAACCACATTTCTAGAGCTTCAAAGGaaaaaaaCTCATCGCTAT  293
            ||||||||| | ||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct  69   GTTGCAGATCAAAGCAAAACCACATATCTTGAGCTTCAAAGGAAAAAAACTCATCGCTAT  128

Query  294  GTGGTCTTCAAGATTGATGAATCCAAAAAAGAAGTTGTTGTTGAGAAAACTGGAAATCCT  353
            |||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||| |||
Sbjct  129  GTGGTCTTCAAGATCGATGAATCCAACAAACAAGTTGTTGTTGAGAAAACTGGAAACCCT  188

Query  354  ACAGAGAGCTACGATGATTTCTTAGCTTCACTTCCTGATAATGACTGCAGATACGCTGTT  413
             | |||||||||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct  189  GCTGAGAGCTACGATGATTTCTTAGCTTCTCTACCCGAAAATGACTGCAGATACGCTGTT  248

Query  414  TATGACTTTGATTTCGTTACTTCTGAGAATTGTCAAAAGAGCAAAATCTTCTTCTTTGCT  473
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  249  TATGACTTCGATTTCGTTACTTCTGAGAATTGTCAAAAGAGCAAAATCTTCTTCTTTGCT  308

Query  474  TGGTCTCCTTCGACCTCTGGAATTCGAGCCAAGGTGCTTTACTCGACTTCTAAAGACCAG  533
            |||||||||||||| ||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct  309  TGGTCTCCTTCGACTTCTCGAATTCGGGCAAAGGTGCTTTACTCGACTTCTAAAGACCAG  368

Query  534  TTAAGTAGGGAGCTTCAAGGGATTCACTATGAGATTCAAGCTACTGATCCTACTGAGGTT  593
            || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  369  TTTAGGAGGGAGCTTCAAGGGATTCACTATGAGATTCAAGCTACTGATCCTACTGAGGTT  428

Query  594  GATCTTGAAGTGTTACGCGAACGAGCGAACTGAGAGCAAGCAAGATTG  641
            |||||||||||||||||||||||||| |||||||||||| ||| ||||
Sbjct  429  GATCTTGAAGTGTTACGCGAACGAGCTAACTGAGAGCAAACAAAATTG  476



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40524660771


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5