BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31210.1
Length=1693
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482048 jgi|Araly1|482048|fgenesh2_kg.4__1108__AT2G31210.1 2056 0.0
> Ahg482048 jgi|Araly1|482048|fgenesh2_kg.4__1108__AT2G31210.1
Length=1363
Score = 2056 bits (1113), Expect = 0.0
Identities = 1276/1354 (94%), Gaps = 13/1354 (1%)
Strand=Plus/Plus
Query 199 GACGACAAAGAAGGAAAAAGATCATCATCTTCTAACTTTT-GTTTTGGTTGCAGaaaaaa 257
||| ||||||||||| ||||||||||||| |||||||||| |||||| |||||| |||||
Sbjct 1 GACAACAAAGAAGGAGAAAGATCATCATCGTCTAACTTTTGGTTTTGTTTGCAG-AAAAA 59
Query 258 aTCAGTTGAAAATGTATGAGGAAAGTTCATGTTTTGATCCTAATTCGATGGTGGACAACA 317
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 60 ATCAGTTGAAAATGTATGAGGAAAGTTCATGTTTTGATCCTAATCCGATGGTAGACAACA 119
Query 318 ACGGCGGCTTCTGTGCGGCGGAAACAACTTTTACGGTAAGCCACCAGTTTCAACCACCGC 377
||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 120 ACGGCAGCTTCTGCGCGGCGGAAACAACTTTTCCGGTAAGCCACCAGTTCCAACCACCGG 179
Query 378 TTGGAAGCACAACAAACAGCTTTGATGACGATCTTAAGCTCCCAACAATGGATGAGTTCT 437
| ||||||||||||||||||||| | |||||||||||||| ||||||||||| || ||||
Sbjct 180 TCGGAAGCACAACAAACAGCTTTAACGACGATCTTAAGCTTCCAACAATGGAGGAATTCT 239
Query 438 CTGTTTTCCCTTCTGTTATCTCTCTCCCAAACTCAGAAACTCAGAACCAAAACATCAGCA 497
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 CTGCTTTCCCTTCTGTTATCTCTCTTCCAAACTCAGAAACTCAGAACCAAAACATCAGCA 299
Query 498 ACAACAACCATTTGATCAACCAAATGATTCAAGAATCGAATTGGGGTGTTTCTGAAGACA 557
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACAACAACCATTTGATCAATCAAATGATTCAAGAATCGAATTGGGGTGTTTCTGAAGACA 359
Query 558 ACTCTAATTTCTTCATGAACACTTCACATCCAAACACAACAACAACTCCAATCCCTGATC 617
||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 360 ACTCTGGTTTCTTCATGAACACTTCACATCCAAATACAACAACAACTCCAATTCCTGATC 419
Query 618 TTCTCAGCCTCTTGCATTTGCCTAGATGCTCTATGTCATTACCAAG--C---TC--T--G 668
||||||||||||||||||||||||||||||| ||| |||||||||| | || | |
Sbjct 420 TTCTCAGCCTCTTGCATTTGCCTAGATGCTCAATGGCATTACCAAGCTCGAATCTTTCGG 479
Query 669 ATATAATGGCGGGTTCTTGCTTCACGTATGACCCGCTCTTTCACTTAAACCTTCCTCCAC 728
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 480 ATATAATGGCGGGTTCTTGCTTCACGTATGACCCGCTCTGCCACTTAAACCTTCCTCCAC 539
Query 729 AACCTCCATTGATCCCTTCTAATGACTACTCAGGGTACTTGCTTGGTATTGATACCAATA 788
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 AACCTCCATTGATCCCTTCTAATGACTACTCAGGGTACTTGCTTGGCATTGATACCAATA 599
Query 789 CTACTACTCAAAGAGATGAGTCTAATGTTGGAGATGAAAATAACAATGCTCAGTTTGATA 848
||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 600 CTACTACTCAAGGAGATGAGTCCAATGTTGGAGATGAGAATAACAATGCTCAGTTCGATA 659
Query 849 GCGGAATCATCGAGTTTAGCAAAGAGATTAGGCGTAAAGGAAGAGGGAAGCGAAAGAACA 908
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 660 GCGGAATCATCGAGTTTAGCAAAGAAATTAGACGTAAAGGAAGAGGAAAGCGAAAGAACA 719
Query 909 AACCTTTTACTACAGAACGTGAGCGAAGATGTCACTTGAATGAGCGGTACGAGGCCTTGA 968
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AACCTTTTACAACAGAACGTGAGCGAAGATGTCACTTGAATGAGCGGTACGAGGCCTTGA 779
Query 969 AATTGCTCATTCCTAGCCCGAGTAAGGGAGATAGAGCATCAATTCTTCAAGATGGAATCG 1028
|||| ||||| |||| |||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 780 AATTACTCATCCCTAACCCGAGTAAGGGCGATAGAGCATCCATTCTTCAAGATGGAATCG 839
Query 1029 ATTACATCAACGAGTTACGCAGAAGAGTAAGTGAGCTTAAGTATTTGGTAGAGAGGAAGA 1088
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 840 ATTACATCAACGAGTTACGCAGAAGAGTAAGCGAGCTTAAGTATTTGGTTGAGAGGAAAA 899
Query 1089 GATGTGGTGGGAGACACAAGAACAATGAAGTAGACGACAACAATAACAACAAAAACTTGg 1148
||||||||||||||||||||||||||||| ||||| |||||| ||||||||| |||| |
Sbjct 900 GATGTGGTGGGAGACACAAGAACAATGAATTAGACAACAACATTAACAACAACAACTCGA 959
Query 1149 atgatcatggtaatgaagatgatgatga-tgatgatgaAAACATGGAGAAGAAGCCGGAG 1207
||||||||| |||||| || |||||| | ||||||||||||||||||||||||||| |||
Sbjct 960 ATGATCATGATAATGATGAAGATGAT-ATTGATGATGAAAACATGGAGAAGAAGCCAGAG 1018
Query 1208 AGCGATGTAATAGACCAATGTTCAAGCAACAACTCGCTGAGATGTTCATGGCTGCAGAGG 1267
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGCGATGTAGTAGACCAATGTTCAAGCAACAACTCGCTGAGATGTTCATGGCTGCAGAGG 1078
Query 1268 AAATCAAAAGTAACAGAAGTTGATGTTAGGATTGTTGATGATGAAGTAACAATCAAAGTT 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AAATCAAAAGTAACAGAAGTTGATGTTAGGATTGTTGATGATGAAGTAACAATCAAAGTT 1138
Query 1328 GTTCAGAAGAAGAAGATCAATTGTTTGTTACTTGTCTCCAAAGTACTTGATCAGCTTCAG 1387
|| || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1139 GTGCAAAAGAAGAAGATTAATTGTTTGTTACTTGTCTCCAAAGTACTTGATCAACTTCAG 1198
Query 1388 CTTGATCTTCACCATGTTGCCGGAGGACAGATTGGTGAGCATTACAGTTTCTTGTTCAAC 1447
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CTTGATCTTTACCATGTTGCAGGAGGACAGATTGGTGAGCATTACAGTTTCTTGTTCAAC 1258
Query 1448 ACCAAGATATATGAAGGATCAACAATATATGCAAGTGCAATAGCAAACAGAGTGATTGAA 1507
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACCAAGATTTATGAAGGATCAACAATATATGCAAGTGCAATAGCAAACAGAGTGATTGAA 1318
Query 1508 GTTGTGGATAAACACTACATGGCTTCTCTTCCCA 1541
|||||||| ||||||||||||||| |||||||||
Sbjct 1319 GTTGTGGACAAACACTACATGGCTGCTCTTCCCA 1352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63496438415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5