BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G31215.1

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933660 jgi|Araly1|933660|scaffold_401648.1                        340    3e-93
  Ahg482049 jgi|Araly1|482049|fgenesh2_kg.4__1109__AT2G31220.1         171    5e-42


> Ahg933660 jgi|Araly1|933660|scaffold_401648.1
Length=582

 Score =  340 bits (184),  Expect = 3e-93
 Identities = 258/292 (88%), Gaps = 11/292 (4%)
 Strand=Plus/Plus

Query  44   AAGGAAAAGGATCAAAG-AAGTCGAGAACTTTCCTTACAGAACGCGAAAGACGAGCTCTC  102
            |||||| |||||| ||| |||||||||||||||| |||||||||||||||||||| || |
Sbjct  87   AAGGAAGAGGATC-AAGAAAGTCGAGAACTTTCCCTACAGAACGCGAAAGACGAGTTCAC  145

Query  103  TTCAATGACCGTTTCTTCGACTTAAAGAACCTCATTCCAAATCCCACAAAGGGAGGTGAA  162
            |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct  146  TTCAATGACCGTATCTTCGAGTTAAAGAACCTCATTCCAAATCCCACAAAGGGAGGTAAA  205

Query  163  GCATCCATTGTTCAAGATGGGATCGTTTACATCAACGAGTTACAAAGACTAGTTAGCGAG  222
            |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct  206  GCATCCATTGTTCAAGATGGGATCGTTTACATCAACGAGTTACGCAGACTAGTTAGCGAG  265

Query  223  CTTAAGTATTTGGTTGAGAAGAAAAAATGCGGTGCAAGGCACAACAACATTGA-AGTAGA  281
            ||||||| ||||||||||||||| | ||| |||| ||| ||||| || ||||| ||||||
Sbjct  266  CTTAAGTCTTTGGTTGAGAAGAAGAGATGTGGTGGAAGACACAAGAATATTGACAGTAGA  325

Query  282  CAATAAAAACACGATTTATGGGACTAGCAAGATAGAGCATCCATTCTCCAAA  333
             || |    ||  ||||||| |||| || ||||||||||||| || || |||
Sbjct  326  -AACA----CA--ATTTATGTGACTGGCGAGATAGAGCATCCGTTTTC-AAA  369


> Ahg482049 jgi|Araly1|482049|fgenesh2_kg.4__1109__AT2G31220.1
Length=1585

 Score =  171 bits (92),  Expect = 5e-42
 Identities = 139/161 (86%), Gaps = 6/161 (4%)
 Strand=Plus/Plus

Query  44   AAGGAAAAGGATCAAAG-AAGTCGAGAACTTTCCTTACAGAACGCGAAAGACGAGCTCTC  102
            |||||| |||||| ||| |||||||||||||||| ||| |||||||||||||||| || |
Sbjct  837  AAGGAAGAGGATC-AAGAAAGTCGAGAACTTTCCCTACCGAACGCGAAAGACGAGTTCAC  895

Query  103  TTCAATGACCGTTTCTTCGACTTAAAGAACCTCATTCCAAATCCCACAAAGGGAGGT-GA  161
            |||||||||||||||||||||||||||||||||||||||||||||||||||   ||| ||
Sbjct  896  TTCAATGACCGTTTCTTCGACTTAAAGAACCTCATTCCAAATCCCACAAAGATTGGTAGA  955

Query  162  AGCATCCATTGTTCAAGATGG-GATCGTTTACATCAACGAG  201
             ||||| || |||  ||| || ||| |  |||||||| |||
Sbjct  956  -GCATCTATCGTTGGAGA-GGCGATAGACTACATCAAAGAG  994



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13964945574


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5