BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31220.1
Length=1697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482049 jgi|Araly1|482049|fgenesh2_kg.4__1109__AT2G31220.1 2329 0.0
Ahg933660 jgi|Araly1|933660|scaffold_401648.1 231 1e-59
> Ahg482049 jgi|Araly1|482049|fgenesh2_kg.4__1109__AT2G31220.1
Length=1585
Score = 2329 bits (1261), Expect = 0.0
Identities = 1499/1608 (93%), Gaps = 39/1608 (2%)
Strand=Plus/Plus
Query 1 TTGTTTAAAAAACTTACTTCTTCTCCTGAAAATTGAGAAGACAGACGTAGAGAAGAATTA 60
|||||||| ||| || ||||||||||||||||||||||||||| || |||||||||| ||
Sbjct 1 TTGTTTAAGAAATTTGCTTCTTCTCCTGAAAATTGAGAAGACAAACATAGAGAAGAACTA 60
Query 61 ATTGTAACAAAGGTGTTAAAGAATCATCTAGAGTACTCGTTGAACCAT-TTCCATGGAAG 119
|||||| |||||||||||||||||||||| || |||||||||||||| || ||||||||
Sbjct 61 ATTGTAGCAAAGGTGTTAAAGAATCATCT--AG-ACTCGTTGAACCATCTT-CATGGAAG 116
Query 120 AAGAAAGAGAAAGCCTTTACGAGGAAATGGGTTGTTTCGATCCCAACACTCCAGCAGAAG 179
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 117 AAGAAAGAGAAAGCCTTTATGAGGAAATGGGTTGTTTCGATCCCAACACTCCGGCAGAAG 176
Query 180 TTACGGTGGAGAGTAGCTTCTCTCAAGCCGAaccaccaccaccaccaccGCAAGTTCTGG 239
||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| |
Sbjct 177 TTACGGTGGAGAGCAGCTTCTCTCAAGCCGAACAACCACCACCACCGCCGCAAGTTCTTG 236
Query 240 TTGCCGGAAGCACAAGCAACAGCAACTGCAGTGTTGAGGTAGAAGAGCTCTCTGAATTCC 299
| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 237 TCGCCGGTAGTACAAGCAACAGTAACTGCAGTGTTGAGGTAGAAGAGCTCTCTGAATTCC 296
Query 300 ATCTCAGCCCACAAGATTGTCCTCAAGCTTCTTCAACACCTCTCCAGTTTCACATCAATC 359
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 297 ATCTCAGCCCACAAGATTGTCCTCAAGCTTCTTCAACACCTCTTCAATTTCACATCAATC 356
Query 360 CTCCTCCTCCACCACCTCCTCCTTGTGATCAACTCCACAACAATTTGATTCACCAAATGG 419
|||||||||| || |||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 357 CTCCTCCTCCTCCTCCTCCTCCTTGTGATCAATTCCACAATAATTTGATTCACCAAATGG 416
Query 420 CTTCACATCAACAACAACACTCTAATTGGGATAATGGGTATCAGGATTTTGTGAATTTGG 479
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct 417 CTTCACAT---CAACAACACTCTAGTTGGGAAAATGGGTATCAAGATTTTGTGAATTTGG 473
Query 480 GACCTAACTCTGCAACAACTCCTGATTTGCTTAGTCTCTTACACTTGCCTAGATGCTCAT 539
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GTCCAAACTCTGCAACAACTCCTGATTTGCTTAGTCTCTTACACTTGCCTAGATGCTCAT 533
Query 540 TGCCTCCTAATCATCATCCTTCCTCTATGCTACCT-A--C--C--TCT--TTCTCAGACA 590
|||||||||||||||||||||| |||||||| ||| | | | ||| ||||||||||
Sbjct 534 TGCCTCCTAATCATCATCCTTCTTCTATGCTTCCTAACTCATCAATCTCATTCTCAGACA 593
Query 591 TTATGTCTTCTTCTTCTGCTGCTGCTGTTATGTACGACCCTCTCTTCCATTTGAATTTCC 650
||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 594 TTATGTCTTCTTCTTCTGCTGCTGCTGTTATGTACGATCCTCTCTTTCATCTGAATTTCC 653
Query 651 CTATGCAGCCTAGAGATCAGAACCAGCTAAGAAACGGCTCTTGTTTACTTGGAGTTGAAG 710
||||||||||| |||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 654 CTATGCAGCCTCGAGACCAGAACCAGCTAAGAAATGGGTCTTGTTTACTTGGAGTTGAAG 713
Query 711 ATCAAATTCAGATGGATGCTAATGGAGGAATGAATGTTTTGTACTTTGAAGGAGC--A-A 767
|||| |||||||||||||||||||||||| |||||||| |||| ||||||||||| | |
Sbjct 714 ATCAGATTCAGATGGATGCTAATGGAGGAGTGAATGTTATGTATTTTGAAGGAGCAAACA 773
Query 768 ACAACAAC---AATGGTGGATTTGAGAATGAGATTCTTGAGTTTAACAATGGAGTTACTC 824
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 774 ACAACAACAATAATGGTGGATTTGAGAATGAGATTCTCGAGTTTAACAATGGAGTTACTC 833
Query 825 GTAAAGGAAGAGGATCAAGAAAGTCGAGAACTTCCCCTACAGAACGTGAGAGACGAGTTC 884
||||||||||||||||||||||||||||||||| |||||| ||||| || ||||||||||
Sbjct 834 GTAAAGGAAGAGGATCAAGAAAGTCGAGAACTTTCCCTACCGAACGCGAAAGACGAGTTC 893
Query 885 ACTTCAATGATCGTTTCTTCGACTTAAAGAACCTCATTCCAAATCCCACAAAGATTGATA 944
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 894 ACTTCAATGACCGTTTCTTCGACTTAAAGAACCTCATTCCAAATCCCACAAAGATTGGTA 953
Query 945 GAGCATCGATAGTTGGAGAGGCGATAGATTACATCAAAGAGCTTTTAAGGACAATAGAGG 1004
||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 954 GAGCATCTATCGTTGGAGAGGCGATAGACTACATCAAAGAGCTGTTAAGGACAATAGAGG 1013
Query 1005 AGTTTAAGATGCTTGTGGAGAAGAAGAGATGTGGGAGATTCaggagcaagaagagagcta 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 AGTTTAAGATGCTTGTGGAGAAGAAGAGATGTGGGAGATTCAGGAGCAAGAAGAGAGCTA 1073
Query 1065 gagttggtgaaggaggaggaggagaagatcaagaagaagaagaagaCACTGTGAATTACA 1124
|||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GAGTTGGTGA-GG-G-AGGAGGAGAAGATCAAGAAGAAGAAGAAGACACTGTGAATTACA 1130
Query 1125 AGCCACAGAGCGAAGTAGACCAGTCTTGCTTCAACAAGAACAACAACAACTCACTGAGAT 1184
|||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||
Sbjct 1131 AGCCACAGAGCGAAGTAGACCAATCTGGCTTCAACAAGAACAACAACACCTCACTGAGAT 1190
Query 1185 GTTCATGGCTTAAGAGGAAATCGAAAGTCACTGAGGTCGATGTACGTATAATCGATGATG 1244
|||| ||||| |||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1191 GTTCTTGGCTGAAGAGGAAATCGAAAGTCACTGAGATCGATGTACGCATAATCGATGATG 1250
Query 1245 AAGTAACCATCAAGCTTGTTCAGAAGAAGAAGATTAACTGTTTGTTGTTCACCACCAAAG 1304
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 AAGTAACCATCAAGCTTGTCCAGAAGAAGAAGATTAACTGTTTGTTGTTCACCACCAAAG 1310
Query 1305 TTCTTGATCAGCTTCAGCTAGATCTTCACCATGTTGCAGGTGGACAGATTGGTGAACATT 1364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 1311 TTCTTGATCAGCTTCAGCTAGATCTCCACCATGTTGCAGGTGGACAGATTGGTGAGCACT 1370
Query 1365 ACAGCTTCTTGTTCAACACTAAGATTTGTGAAGGATCTTGTGTGTATGCAAGTGGAATTG 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 ACAGCTTCTTGTTCAACACTAAGATTTGTGAAGGATCTTGTGTGTATGCAAGTGGAATTG 1430
Query 1425 CAGACACATTGATGGAGGTCGTGGAGAAGCAGTACATGGAAGCTGTTCCTAGCAACGGCT 1484
|||||||| |||||||||| |||||||| |||||||||||||||||||||| ||||||||
Sbjct 1431 CAGACACAGTGATGGAGGTTGTGGAGAAACAGTACATGGAAGCTGTTCCTACCAACGGCT 1490
Query 1485 ACTAGATTCCAGACACACTTATGGAGTAGTTTATTGCTTTTTAATAACTTTTGTGATACC 1544
||||| ||||||||||||||||||||| ||| |||||||||||||||||||| | |
Sbjct 1491 ACTAGCTTCCAGACACACTTATGGAGTGGTTAATTGCTTTTTAATAACTTTT---A-A-- 1544
Query 1545 CCTCTAATGACTGATTAAGTTATTAATCACTTTGGTAATTTTCAAGTT 1592
| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 --T-----GACTGATTAAGTTATTAATCACTTTGGTAATTTTCAAGTT 1585
> Ahg933660 jgi|Araly1|933660|scaffold_401648.1
Length=582
Score = 231 bits (125), Expect = 1e-59
Identities = 203/239 (85%), Gaps = 12/239 (5%)
Strand=Plus/Plus
Query 806 TTTAACAATGGAGTTACTCGTAAAGGAAGAGGATCAAGAAAGTCGAGAACTTCCCCTACA 865
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 65 TTTAACAATGGAGTTACTCGTAAAGGAAGAGGATCAAGAAAGTCGAGAACTTTCCCTACA 124
Query 866 GAACGTGAGAGACGAGTTCACTTCAATGATCGTTTCTTCGACTTAAAGAACCTCATTCCA 925
||||| || |||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct 125 GAACGCGAAAGACGAGTTCACTTCAATGACCGTATCTTCGAGTTAAAGAACCTCATTCCA 184
Query 926 AATCCCACAAAGATTGATAGAGCATCGATAGTTGGAGA-GGCGATAGATTACATCAAAGA 984
|||||||||||| | || |||||| || ||| ||| || ||| | ||||||||| ||
Sbjct 185 AATCCCACAAAGGGAGGTAAAGCATCCATTGTTCAAGATGG-GATCGTTTACATCAACGA 243
Query 985 GCTTTTAAGGACAATAG--AG-GAGTTTAAGATGCTT-G-TGGAGAAGAAGAGATGTGG 1038
| || | | | | ||| || ||| ||||| | ||| | | |||||||||||||||||
Sbjct 244 G-TT--ACGCAGACTAGTTAGCGAGCTTAAG-T-CTTTGGTTGAGAAGAAGAGATGTGG 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63648799395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5