BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31240.1
Length=2051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482051 jgi|Araly1|482051|fgenesh2_kg.4__1111__AT2G31240.1 3022 0.0
> Ahg482051 jgi|Araly1|482051|fgenesh2_kg.4__1111__AT2G31240.1
Length=2050
Score = 3022 bits (1636), Expect = 0.0
Identities = 1923/2061 (93%), Gaps = 22/2061 (1%)
Strand=Plus/Plus
Query 2 TTTTTGTTAGCGAGAGGATTTTCTCGACGCGAGCTCCGGCAATGAAAAG-TTTATCGATT 60
|||||| || |||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 1 TTTTTGCTAACGAGAGGATTTTCTCGACGCGAGCTCCGGCCATGAAAAGCCTT-TCGATT 59
Query 61 TCTCTAATCCGTCGGCTTCATTTCCACAAAATCAGACCAATCCCACTTTCAATCCACCTT 120
|||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 60 TCTCTAATCCGTCGGCTTCATTTCCATAAATTCAGACCAATCCCACTTCCAATCCACCTG 119
Query 121 AATGCTGCTTCTTC---ATCGTCTTCGTCCTCTTCTCTGATCTCGCCAGCACGCGAAATC 177
||| |||||||||| || ||||| |||||||||||| |||||||| |||||||| ||
Sbjct 120 AATACTGCTTCTTCTTTTTCTTCTTCATCCTCTTCTCTGGTCTCGCCAACACGCGAAGTC 179
Query 178 TCCACTAGCTGCAGAAGAACCAATGATC-TGATCAAGCGTCAGTTCTGGGTCAATCCATA 236
|||||| | |||||||||||| ||| | |||||||| ||||||||||||||||||||||
Sbjct 180 TCCACTTGTTGCAGAAGAACCGATG-GCATGATCAAGAGTCAGTTCTGGGTCAATCCATA 238
Query 237 TCGGAATTTGAATACCCATGTCGAGGAACCTCCGGAGATTTCGTCATCTGATAAAGAAAA 296
||||||||| ||||||||||||||||||||||| ||| |||||||| |||||| |||||
Sbjct 239 TCGGAATTTTAATACCCATGTCGAGGAACCTCCAGAGCTTTCGTCAAGTGATAAGGAAAA 298
Query 297 AATCGATCTCGAAGAAGCGTTCGAGTCAGCGAACACCACTGATGAAATGGTACGTTTGTT 356
||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct 299 AATCGATCTCGAAGAAGCGTTTGAGTCGGCGAATACCACTGATGAAATGGTCCGTTTGTT 358
Query 357 CAAGGAGATGGAGTT-ATCATTCGAAGGGAACGAATTAGGTTTATCTGCTTTGAAATTAG 415
|||||| |||||||| | | |||||||||||||||||||||||||| |||||||||||||
Sbjct 359 CAAGGAAATGGAGTTGA-CTTTCGAAGGGAACGAATTAGGTTTATCCGCTTTGAAATTAG 417
Query 416 GGCTCCATCTCGATCGTGAAGGTGAAGATCCTGAAAAGGTTCTGTCTTACGCTGATAAAG 475
| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 418 GTCTCCATCTCGATCGTGAAGGTGAGGATCCTGAAAAGGTTATGTCTTACGCTGATAAAG 477
Query 476 CTCTTAAATCATTCGATGGAGATGGTAATAAACCTAATCTTCTCGTTGCTATGGCGTCGC 535
|||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||| ||
Sbjct 478 CTCTTAAATCTTTCGATGGAGATGGCAATAAACCTAATCTTCTTGTTGCCATGGCGTTGC 537
Query 536 AATTAATGGGTTCTGCTAATTACGGTTTGAAACGTTTTAGTGATAGTTTAGGTTACTTGA 595
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 538 AATTAATGGGTTCTGCTAATTACGGTTTAAAACGGTTTAGTGATAGTTTAGGTTACTTGA 597
Query 596 ATAGAGCTAATAGGATTCTTGTGAAGTTAGAGGCGGATGGTGATTGTGTTGTGGAAGACG 655
| ||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 598 ACAGAGCTAATCGGATTCTTGTTAAGTTAGAGGCAGATGGTGATTGTGTTGTGGAAGACG 657
Query 656 TTAGGCCTGTTTTACACGCTGTGCAGCTTGAGCTTGCTAATGTTAAGAATGCTATGGGAA 715
||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||| |
Sbjct 658 TTAGGCCGGTTTTACACGCCGTGCAACTCGAGCTTGCTAATGTTAAGAATGCTATGGGGA 717
Query 716 GGAGAGAGGAAGCTATTGAGAATTTGAAGAAGAGTTTGGAGATAAAGGAGATGACTTTTG 775
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 718 GGCGAGAGGAAGCTATTGAGAATTTGAAGAAGAGTTTGGAGATTAAGGAGATGACTTTTG 777
Query 776 ATGAAGATAGTAAAGAGATGGGTGTTGCGAATCGGAGTCTTGCTGATGCTTATGTTGCGG 835
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 778 ATGAAGATAGTAAAGAGATGGGTGTGGCGAATCGGAGTCTTGCTGATGCTTATGTTGCGG 837
Query 836 TTTTGAATTTTAATGAGGCTTTGCCTTATGCGTTGAAGGCGTTGGAGATTCATAAGAAGG 895
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 838 TTTTGAATTTTAATGAGGCTTTGCCTTATGCGTTGAAGGCGTTGGAGATACATAAGAAGG 897
Query 896 AGTTGGGGAATAATTCAGCTGAGGTTGCGCAGGATCGGAGGCTACTCGGTGTGATTTATA 955
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 898 AATTGGGGAATAATTCAGCTGAGGTTGCGCAGGATCGAAGGCTACTCGGTGTGATTTATA 957
Query 956 GTGGTTTGGAGCAACATGACAAGGCGTTGGAGCAGAACCGATTGTCTCAGAGAGTGTTAA 1015
| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 958 GCGGTTTAGAGCAACATGACAAGGCATTGGAGCAGAACCGATTGTCTCAGAGAGTGTTAA 1017
Query 1016 AGAATTGGGGGATGAAGTTGGAGCTGATTCGTGCGGAGATTGATGCTGCTAACATGAAGG 1075
|||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1018 AGAATTGGGGAATGAAATTGGAGCTGATTCGTGCGGAGATTGACGCTGCAAACATGAAGG 1077
Query 1076 TTGCTTTGGGTAAATACGAGGAAGCGATTGATATATTGAAGAGCGTTGTTCAACAAACTG 1135
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1078 TTGCTTTGGGTAAATACGAGGAAGCGATTGAAATATTGAAGAGCGTTGTTCAACAAACCG 1137
Query 1136 ACAAGGACAGTGAGATGAGAGCTATGGTGTTTATATCAATGTCGAAAGCTTTGGTAAACC 1195
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AGAAGGACAGTGAGATGAGAGCTATGGTGTTTATATCAATGTCGAAAGCTTTGGTAAACC 1197
Query 1196 AACAGAAGTTTGCTGAATCAAAGAGATGTTTGGAGTTTGCTTGTGAAATCCTCGAGAAAA 1255
|||||||||||||||| || |||| |||||||||||||||||||||||| || ||||| |
Sbjct 1198 AACAGAAGTTTGCTGATTCGAAGAAATGTTTGGAGTTTGCTTGTGAAATTCTTGAGAAGA 1257
Query 1256 AAGAAACAGCTTTGCCAGTTGAAGTCGCTGAAGCATACTCTGAGGTAGCAATGCAGTACG 1315
|||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AAGAAACAGCTTCGCCTGTAGAAGTCGCTGAAGCATACTCTGAGGTAGCAATGCAGTACG 1317
Query 1316 AGTCAATGAACGAATTTGAAACCGCCATCTCTTTATTGCAGAAAACTTT-AGGTATACTA 1374
||||||||||||||||||||||||| || || || ||||| |||||||| || |||||||
Sbjct 1318 AGTCAATGAACGAATTTGAAACCGCTATTTCGTTGTTGCAAAAAACTTTGAG-TATACTA 1376
Query 1375 GAGAAGCTTCCTCAAGAACAGCACTCAGAAGGAAGTGTTTCTGCTAGGATAGGTTGGTTG 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GAGAAGCTTCCTCAAGAACAGCACTCAGAAGGAAGTGTTTCTGCTAGGATAGGTTGGTTG 1436
Query 1435 CTTCTATTCTCAGGCCGAGTCTCACAAGCGGTTCCTTACTTGGAAAGTGCAGCCGAGAGG 1494
||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1437 CTTCTGTTCTCCGGTCGAGTCTCTCAAGCGGTTCCTTACTTGGAAAGTGCAGCCGAGAGG 1496
Query 1495 TTAAAAGAAAGCTTTGGTGCTAAACATTTTGGAGTTGGATATGTATATAACAATCTCGGT 1554
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TTAAAAGAAAGTTTTGGTGCTAAACATTTTGGAGTTGGATATGTATATAACAATCTCGGT 1556
Query 1555 GCTGCTTATTTAGAACTCGGAAGACCTCAATCCGCTGCTCAAATGTTTGCAGTTGCTAAA 1614
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 GCTGCTTATTTAGAGCTCGGAAGACCTCAATCCGCTGCTCAAATGTTTGCAGTTGCTAAA 1616
Query 1615 GACATTATGGATGTTTCACTTGGTCCAAACCATGTGGATTCCATCGATGCTTGCCAGAAT 1674
|||||||||||||||||||| |||||||||||||||||||| || || ||||| ||||||
Sbjct 1617 GACATTATGGATGTTTCACTCGGTCCAAACCATGTGGATTCAATTGACGCTTGTCAGAAT 1676
Query 1675 CTTTCTAAAGCTTACGCTGGAATGGGAAATTATAGCCTCGCAGTGGAATTTCAACAGCGA 1734
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CTTTCGAAAGCTTACGCTGGAATGGGAAATTATAGCCTCGCAGTGGAATTTCAACAGCGA 1736
Query 1735 GTAATCAATGCTTGGGATAATCATGGAGATAGCGCGAAAGACGAAATGAAAGAAGCGAAA 1794
|| ||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1737 GTGATCGATGCTTGGGACAATCATGGAGATAGCGCGAAAGACGAAATGAAAGAAGCAAAA 1796
Query 1795 AGACTTCTTGAGGATTTGCGATTGAAGGCTCGAGGAGGTGTATCAACGAATAAGCTTCTG 1854
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1797 AGACTTCTTGAGGATTTGCGATTGAAGGCTCGAGGAGGCGTATCAACAAATAAGCTTCTG 1856
Query 1855 AATAAGGCTTTACCTTTGCCCAAGCCAAGCCATTCATCTTAGTGAGCTTTGTGAAGTCTC 1914
|||||||||||||||||||||||| ||||| ||| || |||| |||||||||||||||
Sbjct 1857 AATAAGGCTTTACCTTTGCCCAAGACAAGCTATTGAT---AGTGGGCTTTGTGAAGTCTC 1913
Query 1915 AGCCCCAAAGAA----CAATGAAAAGAATAGTGAGATTTAATGTTTTTTCTTTTCAAATG 1970
||| |||||||| ||||||||| ||| |||||||||||||| |||| || |||
Sbjct 1914 AGCACCAAAGAAGAAGCAATGAAAAAAATGGTGAGATTTAATGTCTTTTA----CATATG 1969
Query 1971 ATCGTCGTATACTAAACTCTTGTTTTGCCACTGAATTATGAAGTTATTCTCGAAATAATT 2030
||| |||||||||||||| |||||||||| |||||| || |||||||||||||||||||
Sbjct 1970 ATCATCGTATACTAAACTTTTGTTTTGCCTCTGAATAATTAAGTTATTCTCGAAATAATG 2029
Query 2031 TGTTTAGCTACTTCGATCATT 2051
|||||||||||||||||||||
Sbjct 2030 TGTTTAGCTACTTCGATCATT 2050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77132746125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5