BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31250.1 Length=1656 Score E Sequences producing significant alignments: (Bits) Value Ahg933667 jgi|Araly1|933667|scaffold_401655.1 2061 0.0 Ahg471105 jgi|Araly1|471105|fgenesh2_kg.1__1059__AT1G09940.1 1157 0.0 > Ahg933667 jgi|Araly1|933667|scaffold_401655.1 Length=1630 Score = 2061 bits (1116), Expect = 0.0 Identities = 1437/1588 (90%), Gaps = 38/1588 (2%) Strand=Plus/Plus Query 1 ATGGCGGTTTCTAATGCCTCTGTTGTTCTTAGCCCGAAT-CTGGAGACA------TCGTC 53 ||||||||||||||||||| ||||||| |||||||| || ||| ||||| ||||| Sbjct 21 ATGGCGGTTTCTAATGCCTTTGTTGTTGTTAGCCCG-ATGCTGAAGACATCGTCGTCGTC 79 Query 54 GTCATGGTATCACCATAATCCGTCTTCTTC-TCT--AGACCTGATTAGGATTCATACTCT 110 ||||| | |||||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 80 GTCATCGAATCACCATAATCCGTCTTCTTCTTCTCCGGACCTGATTAGGATTCATACTCT 139 Query 111 TCCGATGAATAAGATGACAAGGAGAGGTTTGATACAGAGAGTGCGTTGCGAGAC-TTCTC 169 | ||||||| || | |||||| |||||| |||| ||||||| |||||||||| | || || Sbjct 140 TTCGATGAACAATAGGACAAGAAGAGGTCTGATCCAGAGAGCGCGTTGCGAG-CTTTGTC 198 Query 170 CGTCCAGCGACTCATCGCCTCTGGACAAGCTTAAGAATTCTCCTGCAATTGACAGATACA 229 |||||| |||||||||| ||||| || ||||||||||||||||| ||| ||||||||||| Sbjct 199 CGTCCAACGACTCATCGGCTCTGAACCAGCTTAAGAATTCTCCTACAAATGACAGATACA 258 Query 230 CAAGGGAGAGAAGCAGCATTGTGGTGATTGGGCTTAGCTTTCACACATCTCCTCTAGAGA 289 ||||||||||||||||||||||||||||||||||||||| ||||| | || ||||||||| Sbjct 259 CAAGGGAGAGAAGCAGCATTGTGGTGATTGGGCTTAGCTATCACAAAGCTACTCTAGAGA 318 Query 290 TGCGTGAGAGGCTTGCTATTCCTGAAGCTGAATGGCCACTAGCTATCACTCAGTTGTGCG 349 ||||||||| |||||| |||||||||||||||||||||| |||||| ||||||||||||| Sbjct 319 TGCGTGAGAAGCTTGCCATTCCTGAAGCTGAATGGCCACGAGCTATTACTCAGTTGTGCG 378 Query 350 CTTTGAATCACATCGAAGAAGCTGCTGTTCTCAGTACCTGCAACCGTATCGAGATTTATG 409 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 379 CTTTGAATCACATTGAAGAAGCTGCTGTTCTCAGTACCTGCAACCGTATCGAGATTTATG 438 Query 410 TATCCGCTCTTTCTCGTTACCGTGGTGTCAAAGAAGTCACTGAATGGATGTCTAAGAGAA 469 | |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 439 TTTCCGCTCTTTCTCGCCACCGTGGTGTCAAAGAAGTCACTGACTGGATGTCTAAGAGAA 498 Query 470 GTGGGATTCCAGTTTCGGATATCTGTCAGCATCGGTTTCTGTTGTACAACAAAGACGCCA 529 |||| ||||||||||| || |||||||| || |||||||||||||||||||||||||||| Sbjct 499 GTGGAATTCCAGTTTCTGACATCTGTCATCACCGGTTTCTGTTGTACAACAAAGACGCCA 558 Query 530 CGCAACATCTGTTTCAAGTCTCAGCTGGTCTGGAATCTCTTGTCATAGGAGAAAATCAGA 589 | |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 559 CACAACATCTATTTCAAGTCTCCGCTGGTCTGGAATCTCTTGTCATAGGAGAAAATCAGA 618 Query 590 TACAATCACAGGTTAGAA-AAGCTGA-ACAAGTAGTTAAACAAGAAGGGTTTGGGAGGAT 647 ||||||||||||||| || ||| ||| | |||||||||||||| |||||||||||||||| Sbjct 619 TACAATCACAGGTTA-AACAAGTTGAGA-AAGTAGTTAAACAACAAGGGTTTGGGAGGAT 676 Query 648 TATCAGTACTCTATTTGAAAAGGCAAACAAGGCTGGAAAGCGTGTCAGAGCACAGACGAA 707 ||||||| | |||||||||||||||| ||||||||||||||||||||||| | |||| || Sbjct 677 TATCAGTGCGCTATTTGAAAAGGCAATCAAGGCTGGAAAGCGTGTCAGAGAAGAGACAAA 736 Query 708 TATCGCGTCTGGGGCTGTTTCCGTTAGCTCTGCTG-CAGTCGAACTTGCTCTCACTAAGC 766 |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 737 CATCGCGTCTGGGGCTGTTTCCGTTAGCTCTGCTGCCA-TCGAACTTGCTCTCACTAAGC 795 Query 767 TTCCAGGATCTGTATCATCTGCTATGATGTTGGTAATTGGTGCAGGAGA-GATGGGGAAG 825 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 796 TTCCAGGATCTGTATCATCTGCTATGATGTTGGTAATTGGTGCAGGA-ACGATGGGGAAG 854 Query 826 CGTATAATCGAGCACCTGGTTGCTAAAGGTTGCACTAAAATGGTGGTTATGAACCGGAGC 885 | | ||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 855 CTTGTAATCAAGCACCTGGTTGCTAAAGGTTGCACTGAAATGGTGGTTATGAACCGAAGC 914 Query 886 GAAGATAAAGTTGCAGCTATCCGCAAGGAGATGCAGTCTGGCGTTGAGATTATTTATAAA 945 |||| |||||||||||||||||| || |||||| | |||||||| ||||||| |||| | Sbjct 915 CAAGAGAAAGTTGCAGCTATCCGCGAGAAGATGCCGCCTGGCGTTAAGATTATCTATAGA 974 Query 946 CCCCTT-GACGAGATTCTAGCTTGTGCTGCAGAAGCCAACGTGATTTTTACTAGCACATC 1004 ||| || || ||||| |||||||||||| ||||||||||||| || |||||||||||| | Sbjct 975 CCC-TTAGATGAGATGCTAGCTTGTGCTTCAGAAGCCAACGTAATCTTTACTAGCACAGC 1033 Query 1005 ATCTGAGACACCATTGTTCTTGAAGGAGCACGTAGAGATCCTCCCTCCTTGTCCTGCAGA 1064 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1034 ATCTGAGACACCATTGTTCTTGAAGGAGCACGTAGAGATCCTCCCTCCTTGTCCTGCAGA 1093 Query 1065 T-TA--TGCGAGGCTCTTTGTTGATATCTCTGTTCCTAGAAATGTTGGGTCTTGTGTTGC 1121 | || |||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 1094 TGTAGATGCGAGGCTCTTTGTTGATATCTCTGTTCCTAGAAATGTTGGCTCTTGTGTAGC 1153 Query 1122 TGAATTAGACAGTGCACGGGTTTACAACGTTGATGACCTCAAGGAAGTTGTTGCTGCCAA 1181 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1154 TGAATTAGACAGTGCACGGGTTTACAACGTGGATGACCTCAAGGAAGTTGTTGCTGCCAA 1213 Query 1182 TAAAGAAGACAGGGCGAGGAAATCAATGGAAGCTCTCCCTATAATAAGAGAGGAGACAAT 1241 || |||||||||||||||||| |||||||||||| |||||||| ||||||| |||| Sbjct 1214 TATGGAAGACAGGGCGAGGAAAGCAATGGAAGCTCGGGATATAATAACAGAGGAGTCAAT 1273 Query 1242 AGAGTTTGAAGGGTGGAGGGATTCGCTGCAGACGTTTCCAACAATCAGGAAATTAAGAAG 1301 | ||||||||||||||||||||||| || | ||||||||||||||| |||||||||||| Sbjct 1274 AAAGTTTGAAGGGTGGAGGGATTCGATG-A--CGTTTCCAACAATCAAGAAATTAAGAAG 1330 Query 1302 CAAAACAGAGAGAATCAGAGCTGAATG-TGTTGAAAAATTAATCTCGAAACATGGGAATG 1360 ||||||||||| ||||||||||| || |||||||||||| || |||||| |||| || | Sbjct 1331 CAAAACAGAGAAAATCAGAGCTGC-TGCTGTTGAAAAATTCATGTCGAAATATGGCAAAG 1389 Query 1361 GCATGGACAAAAAGACGAGGGAAGCAGTAGAGAAACAAACC--AGAATTATAGTGAACAA 1418 ||||||||| ||||||||||||||||||||||| |||| ||| |||||||||| Sbjct 1390 ACATGGACAAGAAGACGAGGGAAGCAGTAGAGAATGTAACCCTAGAG--ATAGTGAACAG 1447 Query 1419 TATCCTGGATTACCCAATGAAACATTTGAGATACGATGGGACTGGTAGCAGCAA-GCTGC 1477 |||||| | ||||||||||||||||||||| ||||||||||| |||||| || ||||| Sbjct 1448 GATCCTGCACGACCCAATGAAACATTTGAGATGCGATGGGACTGATAGCAG-AATGCTGC 1506 Query 1478 GGGAGACGCTAGAGAATATGCAGGCTGTGAACAGAATTTATGAACTCGACGGAGAGTTAC 1537 ||||| |||||||| |||||||||||||||||||| ||||||||||||| |||||||| Sbjct 1507 ATGAGACTCTAGAGAACATGCAGGCTGTGAACAGAATGTATGAACTCGACGCAGAGTTAC 1566 Query 1538 TCGAGGAGAAGATTAGAGAAAAGAAAGA 1565 |||||||||||||||||| ||| ||||| Sbjct 1567 TCGAGGAGAAGATTAGAGCAAA-AAAGA 1593 > Ahg471105 jgi|Araly1|471105|fgenesh2_kg.1__1059__AT1G09940.1 Length=2008 Score = 1157 bits (626), Expect = 0.0 Identities = 1242/1529 (81%), Gaps = 83/1529 (5%) Strand=Plus/Plus Query 94 ATTAGGATTCATACTCTTCCGATGAATAA-GAT--G-ACAAGGAGAGGTTTGATACAGAG 149 ||| |||||| | ||||||||||||| || || | |||| | ||||| |||| ||||| Sbjct 339 ATTGGGATTCGTGCTCTTCCGATGAACAACAATAGGAACAA-GCGAGGTCTGATCCAGAG 397 Query 150 AGTGCGTTGCGAGACTTCTCCGTC-CA-GCGA-CT--CATCGC--CTCTGGA-CAAGCTT 201 || |||||||||| ||||||||| | || | || |||| | |||| || | ||||| Sbjct 398 AGCCCGTTGCGAGATTTCTCCGTCTAAGGC-AGCTAGCATCTCAGCTCTCGAGC-AGCTT 455 Query 202 AAGAATTCTCCTGCAATTGACAGATACAC-AAGGGAGAGAAGCAGCATTGTGGTGATTGG 260 ||| | || |||| |||||| ||||||| || ||| |||||||||||| | |||||||| Sbjct 456 AAG-A--CTTCTGCTATTGACCGATACACTAA-GGAAAGAAGCAGCATTATTGTGATTGG 511 Query 261 GCTTAGCTTTCACACATCTCCTCTAGAGATGCGTGAGAGGCTTGCTATTCCTGAAGCTGA 320 ||||||| | |||||| ||||| | ||||||||||||| |||||||||||| |||||||| Sbjct 512 GCTTAGCATCCACACAGCTCCTGTTGAGATGCGTGAGAAGCTTGCTATTCCAGAAGCTGA 571 Query 321 ATGGCCACTAGCTATCACTCAGTTGTGCGCTTTGAATCACATCGAAGAAGCTGCTGTTCT 380 |||||||| ||| ||| || | ||||| | ||||||||| || |||||||||||||| || Sbjct 572 ATGGCCACGAGCGATCGCTGAATTGTGTGGTTTGAATCATATTGAAGAAGCTGCTGTCCT 631 Query 381 CAGTACCTGCAACCGTATCGAGATTTATGTATCCGCTCTTTCTC-GTTACCGTGGTGTCA 439 ||||||||||||||| || ||||||||||| | ||||| || | | | ||||| |||| Sbjct 632 CAGTACCTGCAACCGAATGGAGATTTATGTCTTGGCTCTATCACAG-CATCGTGGAGTCA 690 Query 440 AAGAAGTCACTGAATGGATGTCTAAGAGAAGTGGGATTCCAGTTTCGGATATCTGTCAGC 499 ||||||| ||||| |||||| |||||| |||||| || || ||||| || |||||||||| Sbjct 691 AAGAAGTTACTGAGTGGATGGCTAAGACAAGTGGAATCCCGGTTTCCGAAATCTGTCAGC 750 Query 500 ATCGGTTTCTGTTGTACAACAAAGACGCCACGCAACATCTGTTTCAAGTCTCAGCTGGTC 559 |||| ||||| ||||||||||| |||| ||| |||||| | ||| ||||||||||||||| Sbjct 751 ATCGTTTTCTATTGTACAACAAGGACGTCACACAACATATATTTGAAGTCTCAGCTGGTC 810 Query 560 TGGAATCTCTTGTCATAGGAGAAAATCAGATACAAT-CACAGGTTAGAA-AAGCTG-AAC 616 | || || ||||||||||||||||||||||||| | ||||||||| || ||| || | Sbjct 811 TAGACTCCCTTGTCATAGGAGAAAATCAGATAC-TTGCACAGGTTA-AACAAGTTGTGA- 867 Query 617 AAGTAGTTAAACAAG--AA-GGGTTTGGGAGGATTATCAGTACTCTATTTGAAA-AGGCA 672 |||||| | || || || ||||||||||||| || ||| |||||| ||| | ||| Sbjct 868 AAGTAGGTCAAGGAGTCAATGGGTTTGGGAGGAACATTAGTGGGCTATTT-AAACACGCA 926 Query 673 AACA-AGGCTGGAAAGCGTGTCAGAGCACAGACGAATATCGCGT-CTGGGGCTGTTTCCG 730 | || | | ||| |||||||||||| || |||| |||||||| | ||||||||||||| | Sbjct 927 ATCACA-GTTGGGAAGCGTGTCAGAACAGAGACAAATATCGC-TGCTGGGGCTGTTTCTG 984 Query 731 TTAGCTCTGCTGCAGTCGAACTTGCTCTCACT-AAGCTTCCAGGA-----TC-TGTATCA 783 ||||||| |||||||||||||||||||||| | || ||||| | | || || |||| Sbjct 985 TTAGCTCGGCTGCAGTCGAACTTGCTCTCA-TGAAACTTCCCGAATCTTCTCATGCATCA 1043 Query 784 TCTGCTATGATGTTGGTAATTGGTGCAGGAGAGATGGGGAAGCGTATAATCGAGCACCTG 843 ||||||| |||||||||||||||||| ||| ||||||| |||| | ||||| ||||| || Sbjct 1044 TCTGCTAGGATGTTGGTAATTGGTGCTGGAAAGATGGGAAAGCTTGTAATCAAGCACTTG 1103 Query 844 GTTGCTAAAGGTTGCACTAAAATGGTGGTTATGAACCGGAGCGAAGATAAAGTTGCAGCT 903 ||||||||||||||||| |||||||||||| |||| || || ||||| |||||||||||| Sbjct 1104 GTTGCTAAAGGTTGCACCAAAATGGTGGTTGTGAATCGAAGTGAAGAGAAAGTTGCAGCT 1163 Query 904 ATCCGCAAGGAGATG-CAGTCTGGCGTTGAGATTATTTATAAACCCCTTGACGAGATTCT 962 || ||| |||||||| || | ||| |||||||||||||||||||||||||| ||||| || Sbjct 1164 ATTCGCGAGGAGATGCCA-TATGGTGTTGAGATTATTTATAAACCCCTTGATGAGATGCT 1222 Query 963 AGCTTGTGCTGCAGAAGCCAACGTGA-TTTTTACTAGCACATCATCTGAGACACCATTGT 1021 | ||||||| || |||||| | || | | |||||||||||| | |||||||||||||| | Sbjct 1223 ATCTTGTGCAGCTGAAGCCGATGT-AGTCTTTACTAGCACAGCTTCTGAGACACCATTAT 1281 Query 1022 TCTTGAAGGAGCACGTAGAGATC-CTCCCTCCTTGTCCTGCAGATTATGCGAGGCTCTTT 1080 ||||||||||||| ||||||| | |||||||| ||| | ||| || |||| |||||| Sbjct 1282 TCTTGAAGGAGCAAGTAGAGA-CTCTCCCTCC-TGT--T--AGA-GATACGAGACTCTTT 1334 Query 1081 GTTGATATCTCTGTTCCTAGAAATGTTGGGTCTTGTGTTGCTGAATTAGACAGTGCACGG 1140 |||||||||||||||||||||||||| |||||||| || |||||| |||| |||||||| Sbjct 1335 GTTGATATCTCTGTTCCTAGAAATGTCGGGTCTTGCGTCGCTGAAATAGATGGTGCACGG 1394 Query 1141 GTTTACAACGTTGATGACCTCAAGGAAGTTGTTGCTGCCAATAAAGAAGACAGGGCGAGG 1200 |||| |||||| ||||||||||||||||| ||| |||| ||| |||||||||||| |||| Sbjct 1395 GTTTTCAACGTGGATGACCTCAAGGAAGTCGTTACTGCAAATCAAGAAGACAGGGTGAGG 1454 Query 1201 AAATCAATGGAAGCTCTCCCTATAATAAGAGAGGAGA-C-AATAGAGTTTGAAGGGTGGA 1258 ||| |||||||||||| ||||||| | ||| || | | || | | ||||||| |||| Sbjct 1455 AAAGCAATGGAAGCTCAGGCTATAATTACAGATGA-ATCGAA-ACACTTTGAAGCATGGA 1512 Query 1259 GGGATTCGCTGCAGACGTTTCCAACAATCAGGAAATTAAGAAGCAAA-ACAGAGAGAATC 1317 ||||||||||| ||||| |||||||||||| ||||||||| | | | ||||||||||| Sbjct 1513 GGGATTCGCTGGAGACGGTTCCAACAATCAAGAAATTAAGGGG-ATATACAGAGAGAATT 1571 Query 1318 AGAGCTGAATGTG-TTGAAAAATTAAT-CTCGAAA-CATGGGAAT-G-GCATGGACAAAA 1372 | ||||| | | | |||| ||||| | | ||||| | ||| || | | ||| |||| | Sbjct 1572 ATAGCTGCA-GAGATTGAGAAATTCTTGC-CGAAATC--GGGCATTGAG-ATGAACAAGA 1626 Query 1373 AGACGAGGGAAGCAGTAGA-GAAACAAA-CCAGAATTATAGTGAACAATATCCTGGATTA 1430 || ||| || ||||||| || | || || || |||||||||||| ||||| | Sbjct 1627 AGTTGAGAAAATCAGTAGATGAT-CTAATCC-GAGGTATAGTGAACAAGCTCCTGCACGG 1684 Query 1431 CCCAATGAAACATTTGAGATACGATGGGA-CTGGTAGCAGCA-AGCTGCGGGAGACGCTA 1488 |||||| | |||||||||| |||||||| | | |||||| | | ||| | ||||| || Sbjct 1685 TCCAATGCAGCATTTGAGATGCGATGGGAGC-GATAGCAGAACA-CTGAGTGAGACACTG 1742 Query 1489 GAGAATATGCAGGCTGTGAACAGAATTTATGAACTCGACGGAGAGTTACTCGAGGAGAAG 1548 ||||| ||||||||| ||||||| || |||| ||| || | |||| |||||||||||||| Sbjct 1743 GAGAACATGCAGGCTCTGAACAGGATGTATGGACTTGATGCAGAGATACTCGAGGAGAAG 1802 Query 1549 ATTAGAGAAAAGAAAG-ACAAAAAGTAGA 1576 ||||||| |||| | | |||||||||| Sbjct 1803 ATTAGAGCAAAGGTGGGA-AAAAAGTAGA 1830 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62087099350 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5