BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31250.1
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933667 jgi|Araly1|933667|scaffold_401655.1 2061 0.0
Ahg471105 jgi|Araly1|471105|fgenesh2_kg.1__1059__AT1G09940.1 1157 0.0
> Ahg933667 jgi|Araly1|933667|scaffold_401655.1
Length=1630
Score = 2061 bits (1116), Expect = 0.0
Identities = 1437/1588 (90%), Gaps = 38/1588 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGTTTCTAATGCCTCTGTTGTTCTTAGCCCGAAT-CTGGAGACA------TCGTC 53
||||||||||||||||||| ||||||| |||||||| || ||| ||||| |||||
Sbjct 21 ATGGCGGTTTCTAATGCCTTTGTTGTTGTTAGCCCG-ATGCTGAAGACATCGTCGTCGTC 79
Query 54 GTCATGGTATCACCATAATCCGTCTTCTTC-TCT--AGACCTGATTAGGATTCATACTCT 110
||||| | |||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 80 GTCATCGAATCACCATAATCCGTCTTCTTCTTCTCCGGACCTGATTAGGATTCATACTCT 139
Query 111 TCCGATGAATAAGATGACAAGGAGAGGTTTGATACAGAGAGTGCGTTGCGAGAC-TTCTC 169
| ||||||| || | |||||| |||||| |||| ||||||| |||||||||| | || ||
Sbjct 140 TTCGATGAACAATAGGACAAGAAGAGGTCTGATCCAGAGAGCGCGTTGCGAG-CTTTGTC 198
Query 170 CGTCCAGCGACTCATCGCCTCTGGACAAGCTTAAGAATTCTCCTGCAATTGACAGATACA 229
|||||| |||||||||| ||||| || ||||||||||||||||| ||| |||||||||||
Sbjct 199 CGTCCAACGACTCATCGGCTCTGAACCAGCTTAAGAATTCTCCTACAAATGACAGATACA 258
Query 230 CAAGGGAGAGAAGCAGCATTGTGGTGATTGGGCTTAGCTTTCACACATCTCCTCTAGAGA 289
||||||||||||||||||||||||||||||||||||||| ||||| | || |||||||||
Sbjct 259 CAAGGGAGAGAAGCAGCATTGTGGTGATTGGGCTTAGCTATCACAAAGCTACTCTAGAGA 318
Query 290 TGCGTGAGAGGCTTGCTATTCCTGAAGCTGAATGGCCACTAGCTATCACTCAGTTGTGCG 349
||||||||| |||||| |||||||||||||||||||||| |||||| |||||||||||||
Sbjct 319 TGCGTGAGAAGCTTGCCATTCCTGAAGCTGAATGGCCACGAGCTATTACTCAGTTGTGCG 378
Query 350 CTTTGAATCACATCGAAGAAGCTGCTGTTCTCAGTACCTGCAACCGTATCGAGATTTATG 409
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 CTTTGAATCACATTGAAGAAGCTGCTGTTCTCAGTACCTGCAACCGTATCGAGATTTATG 438
Query 410 TATCCGCTCTTTCTCGTTACCGTGGTGTCAAAGAAGTCACTGAATGGATGTCTAAGAGAA 469
| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 439 TTTCCGCTCTTTCTCGCCACCGTGGTGTCAAAGAAGTCACTGACTGGATGTCTAAGAGAA 498
Query 470 GTGGGATTCCAGTTTCGGATATCTGTCAGCATCGGTTTCTGTTGTACAACAAAGACGCCA 529
|||| ||||||||||| || |||||||| || ||||||||||||||||||||||||||||
Sbjct 499 GTGGAATTCCAGTTTCTGACATCTGTCATCACCGGTTTCTGTTGTACAACAAAGACGCCA 558
Query 530 CGCAACATCTGTTTCAAGTCTCAGCTGGTCTGGAATCTCTTGTCATAGGAGAAAATCAGA 589
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 559 CACAACATCTATTTCAAGTCTCCGCTGGTCTGGAATCTCTTGTCATAGGAGAAAATCAGA 618
Query 590 TACAATCACAGGTTAGAA-AAGCTGA-ACAAGTAGTTAAACAAGAAGGGTTTGGGAGGAT 647
||||||||||||||| || ||| ||| | |||||||||||||| ||||||||||||||||
Sbjct 619 TACAATCACAGGTTA-AACAAGTTGAGA-AAGTAGTTAAACAACAAGGGTTTGGGAGGAT 676
Query 648 TATCAGTACTCTATTTGAAAAGGCAAACAAGGCTGGAAAGCGTGTCAGAGCACAGACGAA 707
||||||| | |||||||||||||||| ||||||||||||||||||||||| | |||| ||
Sbjct 677 TATCAGTGCGCTATTTGAAAAGGCAATCAAGGCTGGAAAGCGTGTCAGAGAAGAGACAAA 736
Query 708 TATCGCGTCTGGGGCTGTTTCCGTTAGCTCTGCTG-CAGTCGAACTTGCTCTCACTAAGC 766
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 737 CATCGCGTCTGGGGCTGTTTCCGTTAGCTCTGCTGCCA-TCGAACTTGCTCTCACTAAGC 795
Query 767 TTCCAGGATCTGTATCATCTGCTATGATGTTGGTAATTGGTGCAGGAGA-GATGGGGAAG 825
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 796 TTCCAGGATCTGTATCATCTGCTATGATGTTGGTAATTGGTGCAGGA-ACGATGGGGAAG 854
Query 826 CGTATAATCGAGCACCTGGTTGCTAAAGGTTGCACTAAAATGGTGGTTATGAACCGGAGC 885
| | ||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 855 CTTGTAATCAAGCACCTGGTTGCTAAAGGTTGCACTGAAATGGTGGTTATGAACCGAAGC 914
Query 886 GAAGATAAAGTTGCAGCTATCCGCAAGGAGATGCAGTCTGGCGTTGAGATTATTTATAAA 945
|||| |||||||||||||||||| || |||||| | |||||||| ||||||| |||| |
Sbjct 915 CAAGAGAAAGTTGCAGCTATCCGCGAGAAGATGCCGCCTGGCGTTAAGATTATCTATAGA 974
Query 946 CCCCTT-GACGAGATTCTAGCTTGTGCTGCAGAAGCCAACGTGATTTTTACTAGCACATC 1004
||| || || ||||| |||||||||||| ||||||||||||| || |||||||||||| |
Sbjct 975 CCC-TTAGATGAGATGCTAGCTTGTGCTTCAGAAGCCAACGTAATCTTTACTAGCACAGC 1033
Query 1005 ATCTGAGACACCATTGTTCTTGAAGGAGCACGTAGAGATCCTCCCTCCTTGTCCTGCAGA 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 ATCTGAGACACCATTGTTCTTGAAGGAGCACGTAGAGATCCTCCCTCCTTGTCCTGCAGA 1093
Query 1065 T-TA--TGCGAGGCTCTTTGTTGATATCTCTGTTCCTAGAAATGTTGGGTCTTGTGTTGC 1121
| || |||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1094 TGTAGATGCGAGGCTCTTTGTTGATATCTCTGTTCCTAGAAATGTTGGCTCTTGTGTAGC 1153
Query 1122 TGAATTAGACAGTGCACGGGTTTACAACGTTGATGACCTCAAGGAAGTTGTTGCTGCCAA 1181
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1154 TGAATTAGACAGTGCACGGGTTTACAACGTGGATGACCTCAAGGAAGTTGTTGCTGCCAA 1213
Query 1182 TAAAGAAGACAGGGCGAGGAAATCAATGGAAGCTCTCCCTATAATAAGAGAGGAGACAAT 1241
|| |||||||||||||||||| |||||||||||| |||||||| ||||||| ||||
Sbjct 1214 TATGGAAGACAGGGCGAGGAAAGCAATGGAAGCTCGGGATATAATAACAGAGGAGTCAAT 1273
Query 1242 AGAGTTTGAAGGGTGGAGGGATTCGCTGCAGACGTTTCCAACAATCAGGAAATTAAGAAG 1301
| ||||||||||||||||||||||| || | ||||||||||||||| ||||||||||||
Sbjct 1274 AAAGTTTGAAGGGTGGAGGGATTCGATG-A--CGTTTCCAACAATCAAGAAATTAAGAAG 1330
Query 1302 CAAAACAGAGAGAATCAGAGCTGAATG-TGTTGAAAAATTAATCTCGAAACATGGGAATG 1360
||||||||||| ||||||||||| || |||||||||||| || |||||| |||| || |
Sbjct 1331 CAAAACAGAGAAAATCAGAGCTGC-TGCTGTTGAAAAATTCATGTCGAAATATGGCAAAG 1389
Query 1361 GCATGGACAAAAAGACGAGGGAAGCAGTAGAGAAACAAACC--AGAATTATAGTGAACAA 1418
||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct 1390 ACATGGACAAGAAGACGAGGGAAGCAGTAGAGAATGTAACCCTAGAG--ATAGTGAACAG 1447
Query 1419 TATCCTGGATTACCCAATGAAACATTTGAGATACGATGGGACTGGTAGCAGCAA-GCTGC 1477
|||||| | ||||||||||||||||||||| ||||||||||| |||||| || |||||
Sbjct 1448 GATCCTGCACGACCCAATGAAACATTTGAGATGCGATGGGACTGATAGCAG-AATGCTGC 1506
Query 1478 GGGAGACGCTAGAGAATATGCAGGCTGTGAACAGAATTTATGAACTCGACGGAGAGTTAC 1537
||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1507 ATGAGACTCTAGAGAACATGCAGGCTGTGAACAGAATGTATGAACTCGACGCAGAGTTAC 1566
Query 1538 TCGAGGAGAAGATTAGAGAAAAGAAAGA 1565
|||||||||||||||||| ||| |||||
Sbjct 1567 TCGAGGAGAAGATTAGAGCAAA-AAAGA 1593
> Ahg471105 jgi|Araly1|471105|fgenesh2_kg.1__1059__AT1G09940.1
Length=2008
Score = 1157 bits (626), Expect = 0.0
Identities = 1242/1529 (81%), Gaps = 83/1529 (5%)
Strand=Plus/Plus
Query 94 ATTAGGATTCATACTCTTCCGATGAATAA-GAT--G-ACAAGGAGAGGTTTGATACAGAG 149
||| |||||| | ||||||||||||| || || | |||| | ||||| |||| |||||
Sbjct 339 ATTGGGATTCGTGCTCTTCCGATGAACAACAATAGGAACAA-GCGAGGTCTGATCCAGAG 397
Query 150 AGTGCGTTGCGAGACTTCTCCGTC-CA-GCGA-CT--CATCGC--CTCTGGA-CAAGCTT 201
|| |||||||||| ||||||||| | || | || |||| | |||| || | |||||
Sbjct 398 AGCCCGTTGCGAGATTTCTCCGTCTAAGGC-AGCTAGCATCTCAGCTCTCGAGC-AGCTT 455
Query 202 AAGAATTCTCCTGCAATTGACAGATACAC-AAGGGAGAGAAGCAGCATTGTGGTGATTGG 260
||| | || |||| |||||| ||||||| || ||| |||||||||||| | ||||||||
Sbjct 456 AAG-A--CTTCTGCTATTGACCGATACACTAA-GGAAAGAAGCAGCATTATTGTGATTGG 511
Query 261 GCTTAGCTTTCACACATCTCCTCTAGAGATGCGTGAGAGGCTTGCTATTCCTGAAGCTGA 320
||||||| | |||||| ||||| | ||||||||||||| |||||||||||| ||||||||
Sbjct 512 GCTTAGCATCCACACAGCTCCTGTTGAGATGCGTGAGAAGCTTGCTATTCCAGAAGCTGA 571
Query 321 ATGGCCACTAGCTATCACTCAGTTGTGCGCTTTGAATCACATCGAAGAAGCTGCTGTTCT 380
|||||||| ||| ||| || | ||||| | ||||||||| || |||||||||||||| ||
Sbjct 572 ATGGCCACGAGCGATCGCTGAATTGTGTGGTTTGAATCATATTGAAGAAGCTGCTGTCCT 631
Query 381 CAGTACCTGCAACCGTATCGAGATTTATGTATCCGCTCTTTCTC-GTTACCGTGGTGTCA 439
||||||||||||||| || ||||||||||| | ||||| || | | | ||||| ||||
Sbjct 632 CAGTACCTGCAACCGAATGGAGATTTATGTCTTGGCTCTATCACAG-CATCGTGGAGTCA 690
Query 440 AAGAAGTCACTGAATGGATGTCTAAGAGAAGTGGGATTCCAGTTTCGGATATCTGTCAGC 499
||||||| ||||| |||||| |||||| |||||| || || ||||| || ||||||||||
Sbjct 691 AAGAAGTTACTGAGTGGATGGCTAAGACAAGTGGAATCCCGGTTTCCGAAATCTGTCAGC 750
Query 500 ATCGGTTTCTGTTGTACAACAAAGACGCCACGCAACATCTGTTTCAAGTCTCAGCTGGTC 559
|||| ||||| ||||||||||| |||| ||| |||||| | ||| |||||||||||||||
Sbjct 751 ATCGTTTTCTATTGTACAACAAGGACGTCACACAACATATATTTGAAGTCTCAGCTGGTC 810
Query 560 TGGAATCTCTTGTCATAGGAGAAAATCAGATACAAT-CACAGGTTAGAA-AAGCTG-AAC 616
| || || ||||||||||||||||||||||||| | ||||||||| || ||| || |
Sbjct 811 TAGACTCCCTTGTCATAGGAGAAAATCAGATAC-TTGCACAGGTTA-AACAAGTTGTGA- 867
Query 617 AAGTAGTTAAACAAG--AA-GGGTTTGGGAGGATTATCAGTACTCTATTTGAAA-AGGCA 672
|||||| | || || || ||||||||||||| || ||| |||||| ||| | |||
Sbjct 868 AAGTAGGTCAAGGAGTCAATGGGTTTGGGAGGAACATTAGTGGGCTATTT-AAACACGCA 926
Query 673 AACA-AGGCTGGAAAGCGTGTCAGAGCACAGACGAATATCGCGT-CTGGGGCTGTTTCCG 730
| || | | ||| |||||||||||| || |||| |||||||| | ||||||||||||| |
Sbjct 927 ATCACA-GTTGGGAAGCGTGTCAGAACAGAGACAAATATCGC-TGCTGGGGCTGTTTCTG 984
Query 731 TTAGCTCTGCTGCAGTCGAACTTGCTCTCACT-AAGCTTCCAGGA-----TC-TGTATCA 783
||||||| |||||||||||||||||||||| | || ||||| | | || || ||||
Sbjct 985 TTAGCTCGGCTGCAGTCGAACTTGCTCTCA-TGAAACTTCCCGAATCTTCTCATGCATCA 1043
Query 784 TCTGCTATGATGTTGGTAATTGGTGCAGGAGAGATGGGGAAGCGTATAATCGAGCACCTG 843
||||||| |||||||||||||||||| ||| ||||||| |||| | ||||| ||||| ||
Sbjct 1044 TCTGCTAGGATGTTGGTAATTGGTGCTGGAAAGATGGGAAAGCTTGTAATCAAGCACTTG 1103
Query 844 GTTGCTAAAGGTTGCACTAAAATGGTGGTTATGAACCGGAGCGAAGATAAAGTTGCAGCT 903
||||||||||||||||| |||||||||||| |||| || || ||||| ||||||||||||
Sbjct 1104 GTTGCTAAAGGTTGCACCAAAATGGTGGTTGTGAATCGAAGTGAAGAGAAAGTTGCAGCT 1163
Query 904 ATCCGCAAGGAGATG-CAGTCTGGCGTTGAGATTATTTATAAACCCCTTGACGAGATTCT 962
|| ||| |||||||| || | ||| |||||||||||||||||||||||||| ||||| ||
Sbjct 1164 ATTCGCGAGGAGATGCCA-TATGGTGTTGAGATTATTTATAAACCCCTTGATGAGATGCT 1222
Query 963 AGCTTGTGCTGCAGAAGCCAACGTGA-TTTTTACTAGCACATCATCTGAGACACCATTGT 1021
| ||||||| || |||||| | || | | |||||||||||| | |||||||||||||| |
Sbjct 1223 ATCTTGTGCAGCTGAAGCCGATGT-AGTCTTTACTAGCACAGCTTCTGAGACACCATTAT 1281
Query 1022 TCTTGAAGGAGCACGTAGAGATC-CTCCCTCCTTGTCCTGCAGATTATGCGAGGCTCTTT 1080
||||||||||||| ||||||| | |||||||| ||| | ||| || |||| ||||||
Sbjct 1282 TCTTGAAGGAGCAAGTAGAGA-CTCTCCCTCC-TGT--T--AGA-GATACGAGACTCTTT 1334
Query 1081 GTTGATATCTCTGTTCCTAGAAATGTTGGGTCTTGTGTTGCTGAATTAGACAGTGCACGG 1140
|||||||||||||||||||||||||| |||||||| || |||||| |||| ||||||||
Sbjct 1335 GTTGATATCTCTGTTCCTAGAAATGTCGGGTCTTGCGTCGCTGAAATAGATGGTGCACGG 1394
Query 1141 GTTTACAACGTTGATGACCTCAAGGAAGTTGTTGCTGCCAATAAAGAAGACAGGGCGAGG 1200
|||| |||||| ||||||||||||||||| ||| |||| ||| |||||||||||| ||||
Sbjct 1395 GTTTTCAACGTGGATGACCTCAAGGAAGTCGTTACTGCAAATCAAGAAGACAGGGTGAGG 1454
Query 1201 AAATCAATGGAAGCTCTCCCTATAATAAGAGAGGAGA-C-AATAGAGTTTGAAGGGTGGA 1258
||| |||||||||||| ||||||| | ||| || | | || | | ||||||| ||||
Sbjct 1455 AAAGCAATGGAAGCTCAGGCTATAATTACAGATGA-ATCGAA-ACACTTTGAAGCATGGA 1512
Query 1259 GGGATTCGCTGCAGACGTTTCCAACAATCAGGAAATTAAGAAGCAAA-ACAGAGAGAATC 1317
||||||||||| ||||| |||||||||||| ||||||||| | | | |||||||||||
Sbjct 1513 GGGATTCGCTGGAGACGGTTCCAACAATCAAGAAATTAAGGGG-ATATACAGAGAGAATT 1571
Query 1318 AGAGCTGAATGTG-TTGAAAAATTAAT-CTCGAAA-CATGGGAAT-G-GCATGGACAAAA 1372
| ||||| | | | |||| ||||| | | ||||| | ||| || | | ||| |||| |
Sbjct 1572 ATAGCTGCA-GAGATTGAGAAATTCTTGC-CGAAATC--GGGCATTGAG-ATGAACAAGA 1626
Query 1373 AGACGAGGGAAGCAGTAGA-GAAACAAA-CCAGAATTATAGTGAACAATATCCTGGATTA 1430
|| ||| || ||||||| || | || || || |||||||||||| ||||| |
Sbjct 1627 AGTTGAGAAAATCAGTAGATGAT-CTAATCC-GAGGTATAGTGAACAAGCTCCTGCACGG 1684
Query 1431 CCCAATGAAACATTTGAGATACGATGGGA-CTGGTAGCAGCA-AGCTGCGGGAGACGCTA 1488
|||||| | |||||||||| |||||||| | | |||||| | | ||| | ||||| ||
Sbjct 1685 TCCAATGCAGCATTTGAGATGCGATGGGAGC-GATAGCAGAACA-CTGAGTGAGACACTG 1742
Query 1489 GAGAATATGCAGGCTGTGAACAGAATTTATGAACTCGACGGAGAGTTACTCGAGGAGAAG 1548
||||| ||||||||| ||||||| || |||| ||| || | |||| ||||||||||||||
Sbjct 1743 GAGAACATGCAGGCTCTGAACAGGATGTATGGACTTGATGCAGAGATACTCGAGGAGAAG 1802
Query 1549 ATTAGAGAAAAGAAAG-ACAAAAAGTAGA 1576
||||||| |||| | | ||||||||||
Sbjct 1803 ATTAGAGCAAAGGTGGGA-AAAAAGTAGA 1830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62087099350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5