BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31270.1
Length=2030
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482053 jgi|Araly1|482053|fgenesh2_kg.4__1113__AT2G31270.1 2662 0.0
Ahg933670 jgi|Araly1|933670|scaffold_401658.1 806 0.0
> Ahg482053 jgi|Araly1|482053|fgenesh2_kg.4__1113__AT2G31270.1
Length=1827
Score = 2662 bits (1441), Expect = 0.0
Identities = 1672/1781 (94%), Gaps = 25/1781 (1%)
Strand=Plus/Plus
Query 1 TGACACTCTATAGACATTGTTGATAAAAATGAGTACACCAGGCTCTTCTAGATCCATTCC 60
||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| |||||
Sbjct 1 TGACACTCTATAGACATTGTTGA-AAAAATGAGTGCACCAGGTTCTTCTAGATCTATTCC 59
Query 61 ATTCAAATCGAAGAAACGATTGGTGATGGATTCGCCGTCTTCGAAATCTCAAACCGGGAA 120
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 60 ATTCAAATCGAAGAAACGGTTAGTGATGGATTCGCCGTCTTCAAAATCTCAAACCGGGAA 119
Query 121 TCCAAATCCGTCTTCTGTAGCATTGCCTACGCCGGAAAAACCACTTGAGAACATGCTTAG 180
||||||||||||||||||||| || ||||||||||| || || |||||||||||||||||
Sbjct 120 TCCAAATCCGTCTTCTGTAGCTTTACCTACGCCGGAGAAGCCGCTTGAGAACATGCTTAG 179
Query 181 TAGATCGAGAAACCGATCTGTGGCTTTATCAGTGAAAGAAATTCGTCAAGCCGCTGGATC 240
|||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 180 TAGATCTAGAAACCGATCTGTGGCTTTATCAGTGAAAGAGATTCGGCAAGCGGCTGGATC 239
Query 241 TCGTCGCAGATCTGAAGATCCGGTTGCTTCATCTGCCAAAAGCAGGCTC---TTTT-T-- 294
|||||| ||||||||||||||||||||||||||||||||||||| |||| |||| |
Sbjct 240 TCGTCGTAGATCTGAAGATCCGGTTGCTTCATCTGCCAAAAGCAAGCTCTTTTTTTCTCA 299
Query 295 ---CGATTCATCATCATCTTCTCCTTCAAAACGTAA-AAGCTCTAACAAAAATGCAGAGA 350
|||||||||||| ||||| ||||||||||| || ||||||||| |||||||||||||
Sbjct 300 CAACGATTCATCATCCTCTTCGCCTTCAAAACG-AATAAGCTCTAATAAAAATGCAGAGA 358
Query 351 AAGAGAAACTTCCGGAGAAGTACGAGAATCTGGGAAAGTTCTTTGAAGCATTGGATAATT 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAGAGAAACTTCCGGAGAAGTACGAGAATCTGGGAAAGTTCTTTGAAGCATTGGATAATT 418
Query 411 CGATGTTGTTATCGAAATTAAGAGGTTCTAAGCCAACATTCTCCAACATTTCTAAACAAA 470
|||| | ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 419 CGATCTCATTATCGAAATTAAGAGGTTCTAAACCAACATTTTCCAACATTTCTAAACAAA 478
Query 471 TCGAGCATTTAACCGAGAGGAGGTTTTGTTATAGTCACTTGGCTCAAATAAAGCATATAT 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCGAGCATTTAACCGAGAGGAGGTTTTGTTATAGTCACTTGGCTCAAATAAAGCATATAT 538
Query 531 TGCCTGAAGCGATTGAGATTAAGAGAGTATTGATACATGATGAAACTACTTGCTGTATGA 590
||| ||||| || ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 539 TGCGAGAAGCCATCGAGATTAAGAGAGTATTGATACATGATGAAAGAACTTGCTGTATGA 598
Query 591 AACCGGACCTTCATGTTACGCTCAATGCCGATGCTGTTGAATACAACGACAAGTCGAAAT 650
|||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 599 AACCGGACCTTCATATTACCCTCAATGCCGATGCTGTTGAATACAAAGACAAGTCGAAAT 658
Query 651 CGGAAAGTAAGAAAATCGCTCTTCGGAAAGTGTTTCGGGCTAGACTTGCGGATTTTGTTA 710
| |||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 659 CCGAAAGTAAGAAAATCGCTCTTCGGAAAGTGTTTCGGGCTAGACTGGCAGAGTTTGTTA 718
Query 711 AAGCTCACCCTCAGGGTGATGAAGTTCCAGAGGAACCGCTTCCTGAGCCCTTCAATAGAA 770
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 719 AAGCTCACCCTCAGGGTGATGAAGTTCCAGAGGAACCGCTTCCTGAGCCATTCAATAGGA 778
Query 771 GGAAACCAGTTGAAAACTCAAA-TGTTGAAGTCAAGCGTGTTAGTTCTCTCATGGAAGAG 829
||||||||| |||||||||||| | |||| |||||| ||||||||||||||||||||||
Sbjct 779 GGAAACCAGATGAAAACTCAAAAT-TTGAGGTCAAGAATGTTAGTTCTCTCATGGAAGAG 837
Query 830 ATGGCTTCTATTCCAGCATCTAAATTGTTTTCATCTCCCATCACATCAACGCCAGTCAAA 889
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 838 ATGGCTTCTATTCCAGCAGCTAAATTGTTTTCATCTCCCATCACATCAACTCCAGTCAAA 897
Query 890 ACAACTTCAAGTCTGGCTAAACCAACTTCGTCTCAGATTAACATTGCTCCAACTCCAACC 949
|||| |||||||| ||| ||||||||||||||||||||||||||||| |||||||||| |
Sbjct 898 ACAAGTTCAAGTCCGGCCAAACCAACTTCGTCTCAGATTAACATTGCACCAACTCCAATC 957
Query 950 AAACCAACTTCAACTCCTGCTAAACAGACTTTGTCTGAGATTAATATAT-TGCCAACTCC 1008
||||||||||||||||||||||||| ||||| |||||||||| | || | ||||||||||
Sbjct 958 AAACCAACTTCAACTCCTGCTAAACCGACTTCGTCTGAGATTGACAT-TGTGCCAACTCC 1016
Query 1009 AGTCAAACCAGTGTCAACTCTGGCTAAGTTTCCTTCAACACCGGCGATTATTGACTCAAC 1068
|||||||| |||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct 1017 AGTCAAACTAGTGTCAACTCTGGCTAAAATTCCTTCAACACCGGCTATAATTGACTCAAC 1076
Query 1069 ACCAGTCATTACTGC---AACTCCACCTGAATTTGCTTCAACTCCTGCCCGGCTGATGAG 1125
|||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1077 ACCAGTCATTGCTGCTTCAACTCCACCTGAATTTGCTTCAACTCCTGCCCGGCTCTTGAG 1136
Query 1126 TACTTCTCTGGCAGCTCGTCCGCTGAAAAGAAGCAACGGTCATACAAATCCAGATGATAT 1185
||| |||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||
Sbjct 1137 TACGTCTCTGGCAGCTCGTCCGCTCAAAAGAAGCAGCGGTCATTCAAATCCAGATGATAT 1196
Query 1186 TTCTGCTGACCCACCGACTAAGCTCGTGAGGCGTTCCTTGTCTCTGAACTTTGATTCTTA 1245
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TTCTGCTGACCCACCAACTAAGCTCGTGAGGCGTTCCTTGTCTCTGAACTTTGATTCTTA 1256
Query 1246 TCCTGAGGATGAGAGAA-CTATGGATTTCACAGATGAT-ATACCCATTGATCAAGTACCA 1303
|||||||||||||| || |||||||||||||||||||| | |||||||||||||||||||
Sbjct 1257 TCCTGAGGATGAGA-AAGCTATGGATTTCACAGATGATGA-ACCCATTGATCAAGTACCA 1314
Query 1304 GAAGAAGA-TGTATCCAGCGATGATGAAATACTCAGCATACTTCCTGATAAACTTCGACA 1362
|||||||| | |||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1315 GAAGAAGAAT-TATCTAGCGATGATGAAATCCTCAGCATACTTCCTGATAAACTTCGACA 1373
Query 1363 TGCGATAAAAGAACAAGAGAGGAAAGCGATTGAGGATCAAAATCCAGCAATCTCTCTGGC 1422
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1374 TGCGATAAAAGAACAAGAGAGGAAAGCGATTGAGGATCAAAACCCAGCAATCTCTCTGGC 1433
Query 1423 AAAAAGAAGGCGAAAGATGATCGCTTGTCTACCTAAACTTTTCAATGTCATCCATTACTT 1482
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1434 AAAAAGAAGGCGAAAGATGATCGCTTGTCTACCCAAACTTTTCAATGTCATCCATTACTT 1493
Query 1483 AATTCAATCGATAAGGCGTTGGGTTATCACAAAAGAAGAGCTTGTGCACAAGATCATTGC 1542
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1494 AATTCAATCGATAAGGCGTTGGGTAATCACAAAAGAAGAGCTTGTGCACAAGATCATCGC 1553
Query 1543 CGGTCACTCTGATATTACTGACAGAAAGGAAGTTGAAGAACAACTAATCTTACTGCAAGA 1602
|| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1554 TGGCCATTCTGATATTACTGACAGAAAGGAAGTTGAAGAACAACTTATCTTACTGCAAGA 1613
Query 1603 AATTGTCCCTGAATGGATGTCTGAGAAAAAATCATCAAGTGGAGATGTTCTAGTATGCAT 1662
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1614 ACTTGTCCCTGAATGGATGTCTGAGAAAAAATCATCAAGTGGAGATGTACTAGTATGCAT 1673
Query 1663 AAACAAGTTGGCATCTCCTCTAACAATCCGATCACGTCTTGAAGAAGAAAACAAGCAAGA 1722
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 AAACAAATTGGCATCTCCCCTAACAATCCGATCACGTCTTGAAGAAGAAAACAAGCAAGA 1733
Query 1723 GATGGCTCCACTGCTTTCTTGAGATCGTGGTTCCATCGGCT 1763
||||||||||||||||||||||| || ||||||||||||||
Sbjct 1734 GATGGCTCCACTGCTTTCTTGAGGTCTTGGTTCCATCGGCT 1774
> Ahg933670 jgi|Araly1|933670|scaffold_401658.1
Length=1412
Score = 806 bits (436), Expect = 0.0
Identities = 640/736 (87%), Gaps = 23/736 (3%)
Strand=Plus/Plus
Query 1042 TTCAACACCGGCGATTATTGACTCAACACCA---GTCATTACTGCAACTCCACCTGAATT 1098
|||||| || || | ||||||||||||||| || || || | ||||||||||||||
Sbjct 687 TTCAACGCCTGCTAAAATTGACTCAACACCAGTTGTTGTTGCTTCGACTCCACCTGAATT 746
Query 1099 TGCTTCAACTCCTGCCCGGCTGATGAGTACTTCTCTGGCAGCTCGTC-CGCTGAAAAGAA 1157
|||||||||||||| ||||||| | |||||||| | || |||||| | ||| ||||||||
Sbjct 747 TGCTTCAACTCCTGTCCGGCTGTTTAGTACTTCACAGGAAGCTCG-CTCGCAGAAAAGAA 805
Query 1158 GCAACGG-TCATACAAATCCAGATGATATTTCTGCTGACCCACCGACTAAGCTCGTGAGG 1216
| | || || |||||||||||||||| ||||||||||||||||| |||||| ||||||
Sbjct 806 GTAGTGGTTC-TACAAATCCAGATGATGTTTCTGCTGACCCACCGGTTAAGCTTGTGAGG 864
Query 1217 CGTTCCTTGTCT-CTGAACTTTGATTCTTATCCTGAGGATGAGAGAA-CTATGGATTTCA 1274
|||||||||| | |||||||||||||||| | ||||||| ||| || |||||||| | |
Sbjct 865 CGTTCCTTGT-TGCTGAACTTTGATTCTTGTTCTGAGGACAAGA-AAGCTATGGATGTGA 922
Query 1275 CAGATGAT-ATACCCATTGATCAAGTACCAGAAGAAGATGTATCCAG---CGATGATGAA 1330
||| |||| | | |||||| ||||||||| ||||||||||||||| ||||| |||
Sbjct 923 CAGTTGATCAGA-CCATTGTTCAAGTACC---AGAAGATGTATCCAGTAATGATGAAGAA 978
Query 1331 ATACTCAGCATACTTCCTGATAAACTTCGAC-ATGCGATAAAAGAACAAGAGAGGAAAGC 1389
|| |||||||| ||||||||||| ||||||| || |||||||||| ||||||| |||| |
Sbjct 979 ATCCTCAGCATGCTTCCTGATAAGCTTCGACAAT-CGATAAAAGATCAAGAGATGAAAAC 1037
Query 1390 GATTGAGGATCAAAATCCAGCAATCTCTCTGGCAAAAAGAAGGCGAAAGATGATCGCTTG 1449
| |||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct 1038 AAATGAGGATCAAAATCCAGCAATCTCACTGGCAAAGAGAAGGCGAGAGATGATCGCTTG 1097
Query 1450 TCTACCTAAACTTTTCAATGTCATCCATTACTTAATTCAATCGATAAGGCGTTGGGTTAT 1509
||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||
Sbjct 1098 CCTACCTAAACTTTTCGATGTCATCCATTACATAATTCAGTCGATAAGGCGTTGGGTAAT 1157
Query 1510 CACAAAAGAAGAGCTTGTGCACAAGATCATTGCCGGTCACTCTGATATTACTGACAGAAA 1569
||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1158 CACAAAAGAAGAGCTTGTGCACAAGATAATTGCCGGTCATTCTGATATTACCGACAGAAA 1217
Query 1570 GGAAGTTGAAGAACAACTAATCTTACTGCAAGAAATTGTCCCTGAATGGATGTCTGAGAA 1629
||||||||||||||||| ||| || ||||||| ||||||| |||||||||||||||||
Sbjct 1218 AGAAGTTGAAGAACAACTGATCCTAATGCAAGAGCTTGTCCCGGAATGGATGTCTGAGAA 1277
Query 1630 AAAATCATCAAGTGGAGATGTT-CTAGTATGCATAAACAAGTTGGCATCTCCTCTAACAA 1688
|| ||||||||| | |||| || ||||||||||||||||| ||||||||||| |||||||
Sbjct 1278 AAGATCATCAAGCGAAGAT-TTACTAGTATGCATAAACAAATTGGCATCTCCCCTAACAA 1336
Query 1689 TCCGATCACGTCTTGAAGAAGAAAACAAGCAAGAGATGGCTCCACTGCTTTCTTGAGATC 1748
| ||||| ||||| ||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1337 TTCGATCCCGTCTAGAAGAAGAAAACAAGCAAGAGATGGCTTCACCGCTTTCTTGAGATC 1396
Query 1749 GTGGTTCCATCGGCTG 1764
| |||||||| |||||
Sbjct 1397 GCGGTTCCATTGGCTG 1412
Score = 573 bits (310), Expect = 2e-162
Identities = 447/513 (87%), Gaps = 9/513 (2%)
Strand=Plus/Plus
Query 379 TCTGGG-AAAGTTCTTTGAAGCATTGGATAATTCGATGTTGTTATCGAAATTAAGAGGTT 437
|||||| ||| ||||| || || ||||||| |||||| | ||||| ||||| |||||||
Sbjct 162 TCTGGGTAAA-TTCTTCGATGCGTTGGATAGTTCGATCCTATTATCAAAATTGAGAGGTT 220
Query 438 CTAAGCCAACATTCTCCAACATTTCTAAACA-AATCGAGCATTTAACCGAGAGGAGGTTT 496
||||||| ||||| ||||||||||| || | |||||||||||||||| | ||||| |||
Sbjct 221 CTAAGCCGACATTTTCCAACATTTC-GAAGATAATCGAGCATTTAACCCAAAGGAGTTTT 279
Query 497 TGTTATAGTCACTTGGCTCAAATAAAGCATATATTGCCTGAAGCGATTGAGATTAAGAGA 556
|| || ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 280 TGCTACAGTCACTTGGCTCAACTAAAGCATATATTGCCTGAAGCGATCGAGATTAAGAGA 339
Query 557 GTATTGATACATGATGAAACTACTTGCTGTATGAAACCGGACCTTCATGTTACGCTCAAT 616
|||||||||||||||||||| ||||||||||||||||| || ||||||||| | |||||
Sbjct 340 GTATTGATACATGATGAAACAACTTGCTGTATGAAACCAGATCTTCATGTTTCACTCAAC 399
Query 617 GCCGATGCTGTTGAATACAACGACAAGTCGAAATCGGAAAGTAAGAAAATCGCTCTTCGG 676
|||||||| |||| |||| | |||||||||| |||||||||||||| |||| ||| |||
Sbjct 400 GCCGATGCAGTTGTATACGATGACAAGTCGATATCGGAAAGTAAGAGAATCAATCTCCGG 459
Query 677 AAAGTGTTTC-GGGCTAGACTTGCGGATTTTGTTAAAGCTCACCCTCAGGGTGATGAAGT 735
|||||| ||| |||| |||||||| || ||||||||| |||| |||||||||||||||||
Sbjct 460 AAAGTG-TTCAGGGCAAGACTTGCAGAGTTTGTTAAAACTCATCCTCAGGGTGATGAAGT 518
Query 736 TCCAGAGGAACCGCTTCCTGAGCCCTTCAATAGAAGGAAACCAGTTGAAAACTCA-AATG 794
||||||||||||||||||||||| || |||| |||||||||| |||||||||| || |
Sbjct 519 TCCAGAGGAACCGCTTCCTGAGCTATTTAATACAAGGAAACCAAATGAAAACTCAGAA-G 577
Query 795 TTGAAGTCAAGCGTGTTAGTTCTCTCATGGAAGAGATGGCTTCTATTCCAGCATCTAAAT 854
|||| || | ||||||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 578 TTGAGGTTGGGTGTGTTAGTTCTGTCATGGAAGAGATGGCTTCTATTCCAGTAGCTAAAT 637
Query 855 TGTTTTCATCTCCCATCACATCAACGCCAGTCA 887
|| ||||||||||||||||||| || ||| |||
Sbjct 638 TGATTTCATCTCCCATCACATCGACTCCA-TCA 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76332850980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5