BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31280.3
Length=3043
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900935 jgi|Araly1|900935|Al_scaffold_0004_1585 3219 0.0
Ahg311694 jgi|Araly1|311694|fgenesh1_pm.C_scaffold_1000474 981 0.0
> Ahg900935 jgi|Araly1|900935|Al_scaffold_0004_1585
Length=2163
Score = 3219 bits (1743), Expect = 0.0
Identities = 1966/2077 (95%), Gaps = 2/2077 (0%)
Strand=Plus/Plus
Query 592 ATGGGTTCTACTTCTCAAGAGATACTGAAGAGCTTTTGCTTTAACACGGACTGGGACTAT 651
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||
Sbjct 1 ATGGGTTCTACTTCTCAAGAGATACTGAGGAGCTTTTGCTCTAACACGGACTGGAACTAT 60
Query 652 GCTGTGTTCTGGCAACTTAATCATCGAGGATCTCGAATGGTACTTACCTTGGAGGATGCT 711
|||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 61 GCTGTGTTCTGGCAACTTAAACACCAAGGATCTCGAATGGTACTTACCTTGGAGGATGCT 120
Query 712 TACTATGACCATCATGGGACGAATATGCATGGAGCACATGACCCCCTTGGGTTAGCTGTG 771
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 TACTATGACCATCATGGGACGAATATTCATGGAGCACATGACCCCCTTGGGTTAGCTGTG 180
Query 772 GCAAAGATGTCTTATCATGTCTATTCTCTAGGGGAAGGGATTGTAGGACAAGTTGCAGTT 831
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GCAAAGATGTCTTATCATGTCTATTCTCTAGGGGAAGGGATTGTAGGACAAGTCGCAGTT 240
Query 832 TCTGGAGAACACCAATGGGTATTTCCCGAAAATTATAACAACTGTAACTCAGCATTTGAG 891
||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||
Sbjct 241 TCTGGAGAACACCAATGGGTATTCCCCGAAAATTATGACAACTGTCACTCAGCATTTGAG 300
Query 892 TTTCATAACGTTTGGGAAAGTCAAATTTCTGCTGGAATTAAGACCATTCTTGTAGTAGCT 951
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTCATAACGTTTGGGAGAGTCAAATTTCTGCTGGAATTAAGACCATTCTTGTAGTAGCT 360
Query 952 GTTGGTCCATGTGGAGTTGTTCAGCTAGGCTCTTTGTGTAAAGTTAATGAAGATGTGAAT 1011
||||||| || |||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTGGTCGATATGGAGTAGTGCAGCTAGGCTCTTTGTGTAAAGTTAATGAAGATGTGAAT 420
Query 1012 TTTGTGAATCATATCCGACATTTATTTCTGGCACTTAGGGATCCATTGGCAGACCATGCA 1071
|| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 TTGGTGAATCATATGCGACATTTATTTCTGGCACTTAGGGATCCATTGGCAGATCATGCA 480
Query 1072 GCAAATTTAAGGCAATGTAATATGAACAATTCGTTATGTCTGCCAAAAATGCCTTCTGAA 1131
|||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 481 GCAAATTTAATGCAATGTAATATGAACAATTCGTTGTGTCTGCCAAATATGCCTTCTGAA 540
Query 1132 GGTTTACATGCTGAGGCTTTCCCTGATTGCTCTGGAGAAGTTGACAAAGCTATGGACGTG 1191
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 GGCTTACATGCCGAGGCTTTCCCTGATTGCTCTGGAGAAGTTGACAAAGCTATGGATGTG 600
Query 1192 GAAGAGTCCAATATTCTAACTCAATACAAAACTAGAAGAAGTGATAGCATGCCTTACAAT 1251
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAAGAATCCAATATTTTAACTCAATACAAAACTAGAAGAAGTGATAGCATGCCTTACAAT 660
Query 1252 ACTCCTTCGTCATGTCTTGTCATGGAGAAGGCAGCCCAAGTTGTTGGTGGTCGTGAAGTT 1311
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 661 ACTCCTTCGTCATGTCTTGTCATGGAGAAGACAGCTCAAGTTGTTGGTGGTCGTGAAGTG 720
Query 1312 GTGCAAGGATCTACTTGTGGGAGTTATAGTGGTGTTACGTTTGGCTTTCCAGTTGACTTG 1371
|||||||||||||| |||||||| ||||| |||||||| | |||||||||||||||||||
Sbjct 721 GTGCAAGGATCTACGTGTGGGAGCTATAGCGGTGTTACATGTGGCTTTCCAGTTGACTTG 780
Query 1372 GTTGGTGCCAAACATGAGAATCAAGTAGGTACTAATATAATCAGGGATGCACCTCATGTG 1431
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 781 GTTGGTGCCAAACATGAGAATCAAGTAGGTACAAATATAATCAGTGATGCACCTCATGTG 840
Query 1432 GGAATGACTAGTGGCTGCAAAGATTCAAG-GGATTTAGATCCTAATTTACATCTGTATAT 1490
|||||||||||||||||||||||| |||| ||||| |||||||||||| ||| ||||||
Sbjct 841 GGAATGACTAGTGGCTGCAAAGATCCAAGAGGATT-AGATCCTAATTTTCATAAGTATAT 899
Query 1491 GAAGAATCATGTGCTCAATGATACAAGCACATCTGCTTTAGCAATTGAGGCTGAAAGATT 1550
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 900 GAAGAATCATGTGCTCAATAATACAAGCTCATCTGCTTTAGCAATTGAGGCTGAAAGATT 959
Query 1551 GATAACAAGCCAATCATATCCACGCCTGGACTCAACTTTTCAGGCTACCTCGAGAACAGA 1610
||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||||||
Sbjct 960 GATAACAGGCCAATCATATCCAGGCCTGGACTCAACTCTTCAGGCTATGTCGAGAACAGA 1019
Query 1611 TAAAGAAAGTTCTTACCATAATGAAGTGTTCCAACTATCTGAGAACCAAGGAAATAAATA 1670
||||||||||||||| || || ||||| ||||||||||| |||||||| ||||||||| |
Sbjct 1020 TAAAGAAAGTTCTTATCAAAACGAAGTATTCCAACTATCGGAGAACCACGGAAATAAAGA 1079
Query 1671 CATAAAAGAGACTGAGCGTATGCTGGGGAGGAACTGCGAGTCTAGTCAATTTGATGCTTT 1730
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1080 CATAAAAGAGACTGACCGTATGCTGGGGAGGAACTGCGAGTCTAGTCGATTTGATGCTTT 1139
Query 1731 GATCTCATCTGGGTATACTTTTGCTGGCAGCGAGCTACTAGAAGCGTTAGGCTCTGCTTT 1790
||| |||||||| |||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1140 GATGTCATCTGGTTATACTTTTGGTGGCAGCGAGCTACTAGAGGCGTTAGGCTCTGCTTT 1199
Query 1791 CAAGCAAACGAACACTGGTCAGGAGGAGCTACTGAAGTCTGAACATGGTTCAACAATGAG 1850
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CAAGCAAGCGAGCACTGGTCAGGAGGAGCTACTGAAGTCTGAACATGGTTCAACAATGAG 1259
Query 1851 ACCAACAGACGATATGAGTCATAGCCAGCTCACGTTTGACCCTGGCCCTGAGAATCTTCT 1910
||||||||| |||||||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 1260 ACCAACAGATGATATGAGTCATAGCCAGCTGACATTTGACTCTGGCCCTGAGAATCTTCT 1319
Query 1911 AGATGCTGTGGTTGCTAATGTGTGTCAAAGAGATGGTAATGCGAGGGATGATATGATGTC 1970
|||||||||||||||||||||||||||||| ||||||||| | |||||||||||| ||||
Sbjct 1320 AGATGCTGTGGTTGCTAATGTGTGTCAAAGCGATGGTAATTCCAGGGATGATATGTTGTC 1379
Query 1971 GAGCAGATCGGTACAATCATTGCTTACTAACATGGAACTGGCAGAACCCTCAGGTCAGAA 2030
||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| ||
Sbjct 1380 GAGCAGATCGGTACAATCATTGCTTACCAGCATGGAACTTGCAGAACCCTCAGGTCAAAA 1439
Query 2031 GAAGCATAATATTGTTAACCCAATTAATAGTGCTATGAATCAGCCACCAATGGCAGAGGT 2090
|||||||||||||||| |||||||| |||||||||||||||||| |||| | ||||||||
Sbjct 1440 GAAGCATAATATTGTTTACCCAATTGATAGTGCTATGAATCAGCTACCACTTGCAGAGGT 1499
Query 2091 GGATACCCAACAAAATTCATCAGATATTTGTGGAGCGTTTTCTTCAATTGGATTCTCATC 2150
||||| ||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||
Sbjct 1500 GGATATCCAACAAAATTCATCAGATATCTGTGGAGCATTTTCTTCGATTGGGTTCTCATC 1559
Query 2151 TACGTACCCCAGCTCCTCTAGTGATCAGTTTCAGACATCCCTGGACATACCCAAGAAGAA 2210
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1560 TACGTATCCCAGCTCCTCTAGTGATCAGTTTCAGACATCCCTGGACATGCCCAAGAAGAA 1619
Query 2211 CAAAAAGAGGGCCAAACCTGGTGAAAGTTCTCGACCTCGCCCAAGAGACAGGCAACTTAT 2270
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1620 CAAAAAGAGGGCCAAGCCTGGTGAAAGTTCTCGACCTCGCCCAAGAGACAGACAACTCAT 1679
Query 2271 TCAAGATCGAATCAAGGAACTTAGAGAACTTGTGCCTAATGGATCTAAGTGCAGTATCGA 2330
||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 1680 TCAGGATCGAATCAAGGAACTTAGAGAACTTGTACCTAATGGAGCTAAGTGCAGTATTGA 1739
Query 2331 TTCTTTGCTAGAACGAACGATCAAACACATGCTCTTTTTGCAGAATGTTACTAAGCATGC 2390
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1740 TTCTTTGCTCGAACGCACGATCAAGCACATGCTCTTTTTGCAGAATGTTACTAAGCATGC 1799
Query 2391 TGAAAAGCTCAGTAAAAGTGCTAATGAAAAGATGCAACAAAAGGAAACTGGTATGCAAGG 2450
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1800 TGACAAGCTCAGTAAAAGTGCTAATGCAAAGATGCAACAAAAGGAAACTGGTATGCAAGG 1859
Query 2451 TTCAAGCTGCGCAGTGGAGGTTGGAGGTCATCTTCAAGTAAGCTCGATCATCGTGGAGAA 2510
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1860 TTCAAGCTGCGCAGTGGAGGTTGGAGGCCATCTTCAAGTATGCTCGATCATCGTGGAGAA 1919
Query 2511 TCTGAACAAGCAGGGGATGGTGCTTATCGAGATGTTATGTGAAGAATGTGGCCATTTTCT 2570
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1920 TCTGAACAAGCAGGGGATGGTGCTCATCGAGATGTTATGTGAAGAATGTAGCCATTTTCT 1979
Query 2571 TGAGATAGCAAACGTCATAAGGAGCTTAGACCTCGTCATCCTAAGAGGTTTCACCGAGAC 2630
||||||||||||||| || ||||||||||||||| ||||| ||||||| ||||||||||
Sbjct 1980 TGAGATAGCAAACGTGATTAGGAGCTTAGACCTCATCATCTTAAGAGGAATCACCGAGAC 2039
Query 2631 TCAGGGCGAGAAAACATGGATATGCTTTGTAACTGAG 2667
|||||||||||||||||||||||||||||||||||||
Sbjct 2040 TCAGGGCGAGAAAACATGGATATGCTTTGTAACTGAG 2076
Score = 141 bits (76), Expect = 3e-32
Identities = 76/76 (100%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 2719 AGCCAAAACAGCAAAGTAATGCAGAGGATGGACATTTTGTGGTCTCTGGTGCAAATATTT 2778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2077 AGCCAAAACAGCAAAGTAATGCAGAGGATGGACATTTTGTGGTCTCTGGTGCAAATATTT 2136
Query 2779 CAACCAAAGGCCAATG 2794
||||||||||||||||
Sbjct 2137 CAACCAAAGGCCAATG 2152
> Ahg311694 jgi|Araly1|311694|fgenesh1_pm.C_scaffold_1000474
Length=3990
Score = 981 bits (531), Expect = 0.0
Identities = 1534/2001 (77%), Gaps = 138/2001 (7%)
Strand=Plus/Plus
Query 745 GCACATGACCCCCTTGGGTTAGCTGTGGCAAAGATGTCTTATCATGT-CTATTCTCTAGG 803
|||||||| |||||||||||||||||||| |||||||| |||||||| | | ||||| ||
Sbjct 175 GCACATGATCCCCTTGGGTTAGCTGTGGCTAAGATGTCATATCATGTAC-ACTCTCTTGG 233
Query 804 GGAAGGGATTGTAGGACAAGTTGCAGTTTCTGGAGAACACCAATGGGTAT-TTC-CCGAA 861
|||||||| |||||||||||| ||| | |||||| |||| |||| || || ||| | |||
Sbjct 234 GGAAGGGACTGTAGGACAAGTGGCAATCTCTGGACAACATCAAT-GG-ATCTTCTCTGAA 291
Query 862 AATTAT-AACAACTGTAAC-TCAG-CATTTGAGTTTCATAACGTTTGGGAAAGTCAAATT 918
||| | || ||| | | || | || || || |||| |||| ||||| |||||||||
Sbjct 292 TATT-TGAATGACTCT-CCTTC-GACACTTCAGGTTCACAACGGCTGGGAGAGTCAAATT 348
Query 919 TCTGCTGGAATTAAGACCATTCTTGTAGTAGCTGTTGGTCCATGTGGAGTTGTTCAGCTA 978
||||||||||||||||| |||||| |||||||||||||| | ||||||||||| |||||
Sbjct 349 TCTGCTGGAATTAAGACTATTCTTATAGTAGCTGTTGGTTCTTGTGGAGTTGTGCAGCTT 408
Query 979 GGCTCTTTGTGTAAAGTT-AATGAAGATGTGAATTTTGTGAATCATATCCGACATTTATT 1037
|||||||||||||||||| || ||||| | ||| |||| ||||||| | ||||| ||
Sbjct 409 GGCTCTTTGTGTAAAGTTGAA-GAAGACCCGGCTTTGGTGACTCATATCAGGCATTTGTT 467
Query 1038 TCTGGCACTTAGGGATCCATTGGCAGACCATGCAGCAAATTTAAG-GCAATGTAATATGA 1096
| ||||||||| ||||||| |||||||||||||| |||| || || || |||| |||| |
Sbjct 468 TTTGGCACTTAAGGATCCACTGGCAGACCATGCATCAAA-TTCAGTGCGATGTGATATTA 526
Query 1097 ACAATTCGTTATG-TCTGCCAAAAATGCCTTCTGAAGGTTTACATGCTGAGGCTTTCCCT 1155
|| | || | | |||||||| || ||||| || | ||||| | ||||| ||||||
Sbjct 527 AC-AGTCCATCGGATCTGCCAACTATACCTTCCAAATGCTTACA--C-GAGGCATTCCCT 582
Query 1156 GATTGCTCTGGAGAAGTTGACAAAGCTATGGACGTGGAAGAGTCCAATATTCTAACTCAA 1215
|||| ||| |||||| |||||||||||||||| ||| || || |||||| || |||||
Sbjct 583 GATTTCTCAGGAGAATTTGACAAAGCTATGGATATGGGAGGGTTAAATATTGTATCTCAA 642
Query 1216 TACAAAACTAGA-AGAAGTGATAG-CATGCCTTACAA--T-ACTCCTTCGTCATGTCTTG 1270
||| || || | |||||||| | | | || ||||| | ||||| | | |||| |
Sbjct 643 AACACAAGTA-ATAGAAGTGA-CGACCTTCCATACAATTTCACTCCAACAT-ATGT-TCA 698
Query 1271 TCATGGAGAAGG-CAGCCCAAGTTGTTGGTGGTCGTGAAGTTGTGCAAGGATCTACT-TG 1328
| |||||| ||| | || ||||| ||||||| | ||||| || ||| || | | |
Sbjct 699 T-ATGGAG-AGGACTGCTCAAGTAATTGGTGGGCTTGAAGCAGTCCAACCTTCCA-TGTT 755
Query 1329 TGGGAGTTA-TAGTGGTGTTACGTTTGGCTTTCCAGTTGACT-TGGTTGGTGCCAAACAT 1386
||| || | || | ||||||| ||| ||| ||||||| | |||||| ||| |||||
Sbjct 756 TGGAAGCAATTA-TTGTGTTACAAGTGGTTTTTCAGTTGA-TGTGGTTGATGCTAAACAC 813
Query 1387 GAGAATCAAGTAGGTACT-AAT-ATAATCAGGGATGCACCTCATG-TG-GGAATGACTAG 1442
||||||||||| |||| | ||| || || || | | | | ||| || |||| ||| |
Sbjct 814 GAGAATCAAGTGGGTA-TAAATGAT-ATGAGTAAGGTAATTTATGATGAGGAA--ACTGG 869
Query 1443 TGGCTGCAAAGATTCAAGGGATTTAGATCCTAATTTACATCTGTATAT-GAAG-AATCAT 1500
||| | | | | ||||| || | |||||||||||| || | ||| | | || ||||||
Sbjct 870 TGGATACCGATACTCAAGAGAATCAGATCCTAATTTCCAACAGTA-CTCG-AGAAATCAT 927
Query 1501 GTGC-TCAATGA-TACAAGCACATCTGCTTTAGCAATTG-AGGCTGAAAGATTGATAA-C 1556
||| | ||| | | || || ||||||||||||||| || || |||| || | | || |
Sbjct 928 CTGCGT-AAT-AGTGCAGGCTCATCTGCTTTAGCAA-TGAAGACTGATAGGCT-AAAAGC 983
Query 1557 AAG-CCAATCATATCCACGCCTGGACTCAACTTTTC-AGGCTACCTCGAGAACAGATAAA 1614
| | || ||||||||||| || || ||| || ||| | || | | | ||||||||||
Sbjct 984 AGGTCC-ATCATATCCACAACTTGATTCACCTGTTCTA-ACTGCGTTAATAACAGATAAA 1041
Query 1615 GA-AAGTTCTTA-CCATAATGAAGTGTTCCAACTATCTGAGAACCAAGGAAATAAATACA 1672
|| | |||| | | | ||||| || ||||||| |||||||| |||||||| || ||
Sbjct 1042 GATTA-TTCTCATCGA-AATGAGGTTTTCCAACCATCTGAGAGCCAAGGAAGTATGTATG 1099
Query 1673 TAAAAGAGACTGAGCGTATGCTGGGGAGGAACTGCGAGTCTAGTCAATTTGATGCTTTGA 1732
| ||||| || || | || || || || || | ||||| |||| || |||||||| |
Sbjct 1100 TGAAAGATACAGAACATAGGCAGGAGAAAAAAAGTGAGTCAAGTCGGTTGGATGCTTT-A 1158
Query 1733 TCT-CATCTGGGTATACTTTTGCTGGCAGCGAGCTACTAGAAGCGTTA-GGCTCTGCTTT 1790
|| ||||| || | ||||| ||||||| ||||| ||||| || ||| ||| | |||||
Sbjct 1159 ACTGCATCTTTGTCTTCTTTTTCTGGCAGTGAGCTGCTAGAGGCATTAGGGC-CAGCTTT 1217
Query 1791 CAAG-CAAACGAACACTGGTCAGGAGGAGCTA-CTGAAGTCTGAA-CATGGTTCAACAAT 1847
| || |||||| ||||||| | || |||||| | |||| |||| | || | || | ||
Sbjct 1218 C-AGTAAAACGAGCACTGGTTATGAAGAGCTAGC-AAAGTTTGAATC-TGCTGCAGCTAT 1274
Query 1848 GAGACCAACAGACGATATGAGTCATAGCCAGCTCACGTTTGAC-CCTGGCCCTGAGAATC 1906
|||| |||| | |||||||| ||||| || || || |||||| || |||| |||||||
Sbjct 1275 AAGACGAACAAATGATATGAGCCATAGTCACCTGACATTTGACTCC-AGCCCCGAGAATC 1333
Query 1907 TTCTAGATGCTGTGGTTGCTAATGTGTGTCAA-AGAGATGGTAATG-CGAGG-GATGATA 1963
|||||||||| || ||||||| | || || || | |||||||||| | ||| | ||| |
Sbjct 1334 TTCTAGATGCCGTTGTTGCTAGTATGAGT-AATGGTGATGGTAATGTC-AGGCG-TGAAA 1390
Query 1964 TGAT-GTCGAGCAGATC-GGTACAATCATTGCTT---A---CT-AACATGGAACTGGCAG 2014
| || ||| || || || | || ||||| ||| | || || |||| | |||||
Sbjct 1391 T-ATCGTCAAGTAGGTCAACT-CAGTCATTACTTACAACTGCTCAA-ATGGCAGAGGCAG 1447
Query 2015 AACCCTCAGGTCAGAAGAAGCATAA-TATTGTTAACCCAATTAATAGTGCT-ATGAATCA 2072
|||| | ||||| || ||||| || | |||||| | || || |||||| | || | ||
Sbjct 1448 AACCTTTTGGTCATAATAAGCA-AAGTCTTGTTAGCACAGTTGATAGTG-TGATTAGCCA 1505
Query 2073 GCCACCAAT-GGCAGAGGTGG-ATACCCAACAAAATTCATCAGATATTTGTGGAGCGTTT 2130
||| || | ||||||| || || || ||| ||| ||||| |||| |||||||| |||
Sbjct 1506 GCCGCC-TTCAGCAGAGG-GGCGTATCCTACAGAATCCATCAAATATCTGTGGAGCATTT 1563
Query 2131 TCTTCAATTGGATTCTCATCTACGTACCCCAGCTCCTCTAGTGATCAGTTTCAGACATCC 2190
||||| ||||| || ||||| || | | ||| || || || || ||||||| ||| |||
Sbjct 1564 TCTTCCATTGGGTTTTCATCAACATGTCTCAGTTCATCCAGCGACCAGTTTCCGACGTCC 1623
Query 2191 CTGGACATACCCAAGAAGAACAAAAAGAGGGCCAAACCTGGTGAAAGTTCTCGACCTCGC 2250
||||| || |||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 1624 CTGGAAATTCCCAAGAAGAACAAAAAGAGAGCTAAACCTGGTGAAAGTTCTCGGCCTCGT 1683
Query 2251 CCAAGAGACAGGCAACTTATTCAAGATCGAATCAAGGAACTTAGAGAACTTGTGCCTAAT 2310
||||| ||||||||||||||||| ||||| ||||| ||||| || || ||||||||||||
Sbjct 1684 CCAAGGGACAGGCAACTTATTCAGGATCGTATCAAAGAACTAAGGGAGCTTGTGCCTAAT 1743
Query 2311 GGATCTAAGTGCAGTATCGATTCTTTGCTAGAACGAACGATCAAACACATGCTCTTTTTG 2370
||||||||||||||||| |||||||||||||| | |||||||| |||||||||||| ||
Sbjct 1744 GGATCTAAGTGCAGTATTGATTCTTTGCTAGAGTGCACGATCAAGCACATGCTCTTTCTG 1803
Query 2371 CAGAATGT-TACTAAGCATGCTGAAAAGCTCAGTAAAAGTGCTAA-TGAAAAGATGCAAC 2428
|||||||| | |||||||||| || ||||||| ||||||||| || | ||||||||| |
Sbjct 1804 CAGAATGTCT-CTAAGCATGCCGACAAGCTCACTAAAAGTGC-AAGTTCAAAGATGCAGC 1861
Query 2429 AAAAGGA-AA---C----T-GG-T-AT---GCA--AG----G-------TTCAAGCTGCG 2461
| ||||| || | | || | || ||| || | ||| ||||| |
Sbjct 1862 ACAAGGATAATGGCACCCTAGGATCATCTAGCACTAGCACTGAACAAGGTTCGAGCTGGG 1921
Query 2462 CAGTGGAGGTTGGAGGTCATCTTCAAGTAAGCTCGATCATCGTGGAGAATCTGAACAA-G 2520
|||||||| ||||||| ||||||||||| | || ||||| |||||||||||| |||| |
Sbjct 1922 CAGTGGAGATTGGAGGCCATCTTCAAGTGTGTTCAATCATGGTGGAGAATCTGGACAAAG 1981
Query 2521 CAGGGGATGGTGCTTATCGAGATGTTATGTGAAGAATGTGGCCATTTTCTTGAGATAGCA 2580
||| | || ||||||||||||||||||| ||||||||| |||| ||||| |||||||||
Sbjct 1982 AAGGAG-TGATGCTTATCGAGATGTTATGCGAAGAATGTAGCCACTTTCTCGAGATAGCA 2040
Query 2581 AACGTCATAAGGAGCTTAGACCTCGTCATCCTAAGAGGTTTCACCGAGACTCAGGGCGAG 2640
||||| ||||||||||| || || ||||||| ||||| |||| |||| || ||||||
Sbjct 2041 AACGTGATAAGGAGCTTGGAACTTATCATCCTCAGAGGCATCACTGAGAAACAAGGCGAG 2100
Query 2641 AAAACATGGATATGCTTTGTA 2661
|||||||||||||||||||||
Sbjct 2101 AAAACATGGATATGCTTTGTA 2121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114918269165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5