BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31290.1 Length=2199 Score E Sequences producing significant alignments: (Bits) Value Ahg933672 jgi|Araly1|933672|scaffold_401660.1 2028 0.0 > Ahg933672 jgi|Araly1|933672|scaffold_401660.1 Length=1288 Score = 2028 bits (1098), Expect = 0.0 Identities = 1217/1276 (95%), Gaps = 2/1276 (0%) Strand=Plus/Plus Query 318 TTTGGTAGTCAGAGACTGATATGGCTATGACACGAGAGTTATATCGG-ATTCTGGGTACC 376 ||||||| ||||| |||||||||||||||||||||||||||||| || |||||||| ||| Sbjct 1 TTTGGTAATCAGACACTGATATGGCTATGACACGAGAGTTATAT-GGAATTCTGGGCACC 59 Query 377 AAGTATGCTCCATTGTTAATCCGAAGATTCTCACTTTGGTCAACGAAGAAAGACCCTGAT 436 ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 60 AAGTATGTTCCATTGTTAATCCGAAGATTCTCACTTTGGTCTACGAAGAAAGACCCTGAT 119 Query 437 CTCGAATCTGCTCTCTCGCGTAACAAGCGATGGATTGTTAACAGTCGGCTCAAGAACATT 496 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 120 CTCGAATCTGCTCTCTCGCGTAACAAGCGATGGATAGTTAACAGCCGGCTCAAGAACATT 179 Query 497 ATCTTAAGGTGTCCCAATCAGGTTGCATCGATTAAGTTTCTACAGAAGAAGTTTAAGACT 556 ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 180 ATCTTAAGGTGTCCCAACCAGGTTGCATCGGTTAAGTTTCTACAGAAGAAGTTTAAGACT 239 Query 557 CTTGATCTTCAGGGGAAAGCCTTGAATTGGCTTAAGAAATACCCTTGTTGTTTCCATGTT 616 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 240 CTTGATCTACAGGGGAAAGCCTTGAATTGGCTTAAGAAGTACCCTTGTTGTTTCCACCTT 299 Query 617 TATCTCGAGAACGATGAGTATTACTGTAGGTTAACGAAACCGATGATGACGCTTGTGGAA 676 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 300 TATCTCGAGAACGATGAGTATTACTGTCGGTTAACGAAACCGATGATGACGCTTGTGGAA 359 Query 677 GAGGAAGAGTTGGTCAAAGATACACAAGAGCCTGTACTCGCAGATAGGCTTGCAAAGCTG 736 || ||||| |||||||||||||||||||||||| | || || |||||||||||||||||| Sbjct 360 GAAGAAGAATTGGTCAAAGATACACAAGAGCCTCTGCTTGCTGATAGGCTTGCAAAGCTG 419 Query 737 CTTATGTTGAGTGTTAATCAGCGTCTCAATGTCGTGAAGCTTAACGAGTTTAAGCGGAGC 796 |||||| |||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 420 CTTATGATGAGTGTTAATCAGCGCCTTAATGTCGTGAAGCTTAACGAGTTTAAGCGGAGT 479 Query 797 TTTGGATTCCCTGATGATTATGTTATCAGAATAGTTCCAAAGTACTCAGATGTGTTTCGG 856 ||||||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||| Sbjct 480 TTTGGATTCCCTGATGATTATGTGATCAGGATACTACCAAAGTACTCAGATGTGTTTCGA 539 Query 857 TTAGTGAATTATAGTGGTAGGAAGAGTTCAATGGAGATTGAGCTTTTGTTGTGGAAGCCT 916 ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 540 TTAGTAAATTATAGTGGGAGGAAGAGTTCAATGGAGATCGAGCTTTTGTTGTGGAAGCCT 599 Query 917 GAGTTGGCTGTCTCTGCAGTTGAAGCAGCAGCAAAGAAATGTGGCTCTGAGCCTAGTTTC 976 ||||||||||| |||||||| ||||||||||| ||||| ||||||||| ||||||||||| Sbjct 600 GAGTTGGCTGTTTCTGCAGTGGAAGCAGCAGCGAAGAATTGTGGCTCTCAGCCTAGTTTC 659 Query 977 TCTTGCTCTCTACCTTCCACGTGGACCAAACCGTGGGAGAGGTTCATGGAGTTTAATGCC 1036 ||||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||| Sbjct 660 TCTTGCTCTTTACCTTCCACATGGACCAAACCGTGGGAAAGGTTTATGGAGTTTAATGCC 719 Query 1037 TTTCCTTACATATCTCCGTATGAGGATCATGGGGATCTTGTTGAGGGTTCAAAGGAGAGT 1096 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 720 TTTCCTTACATATCTCCGTATGACGATCATGGGGATCTTGTTGAGGGTTCAAAGGAGAGT 779 Query 1097 GAGAAGAGAAGTGTTGGTTTGGTGCACGAGTTACTCTCGTTGACGTTGTGGAAAAAGCTG 1156 ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 780 GAGAAGAGAAGCGTTGGTTTGGTGCACGAATTACTCTCGTTAACGTTGTGGAAGAAGCTG 839 Query 1157 TCAATCGTAAAGCTGAGTCATTTCAAGAGGGAATTTGGGTTACCGGAGAAGCTAAATGGT 1216 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 840 TCTATCGTAAAGCTGAGTCATTTCAAGAGGGAATTTGGGTTGCCGGAGAAGCTAAATGCT 899 Query 1217 ATGCTTCTGAAGCATCCAGGCATATTCTACGTTGGAAACAAGTATCAGGTTCACACTGTG 1276 |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 900 ATGCTTCTGAAGCATCCAGGCATATTCTACGTCGCAAACAAGTATCAGGTTCACACTGTG 959 Query 1277 ATCCTCAGAGAAGGATACAATGGCTCGGAATTGATTCACAAGGACCCGCTCGTTGTTGTG 1336 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 ATCCTTAGAGAAGGATACAATGGCTCGGAATTGATTCACAAGGACCCGCTCGTTGTTGTG 1019 Query 1337 AAGGATAAATTTGGGGAATTGATGCAGCAGGGCTTGTATGAGTATAATCACAGGCGATAT 1396 ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 AAGGAAAAATTTGGGGAACTGATGCAGCAGGGCTTGTATGAGTATAATCACAGGCGATAT 1079 Query 1397 TTGGCTAATCTagagaagaagagagagaAAGGTATTGAATCTTTGAAGCCTGTGGTGCGA 1456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 TTGGCTAATCTAGAGAAGAAGAGAGAGAAAGGTATTGAATCTTTGAAGCCTGTGGTGCGA 1139 Query 1457 AAGAAAGACAGGAACCACGATCGAGATGATGTCGATGAAGAAGAAAACCATGGGGATCGA 1516 |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1140 AAGAAAGACAGGAATCACGATGGAGATGATGTCGATGAAGAAGAAAACCATGGGGATCGA 1199 Query 1517 CCAGGTGGTCTGTTTGATCCAGAAGAGAGAAAAAGGTTTTATCAGATTCTCTTCAGTGAC 1576 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 CCAGGTGGTCTGTTCGATCCAGAAGAGAGAAAAAGGTTTTATCAGATTCTCTTCAGTGAC 1259 Query 1577 ACCCAATAAGAACATT 1592 |||||||||||||||| Sbjct 1260 ACCCAATAAGAACATT 1275 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82770102385 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5