BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31290.1
Length=2199
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933672 jgi|Araly1|933672|scaffold_401660.1 2028 0.0
> Ahg933672 jgi|Araly1|933672|scaffold_401660.1
Length=1288
Score = 2028 bits (1098), Expect = 0.0
Identities = 1217/1276 (95%), Gaps = 2/1276 (0%)
Strand=Plus/Plus
Query 318 TTTGGTAGTCAGAGACTGATATGGCTATGACACGAGAGTTATATCGG-ATTCTGGGTACC 376
||||||| ||||| |||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 1 TTTGGTAATCAGACACTGATATGGCTATGACACGAGAGTTATAT-GGAATTCTGGGCACC 59
Query 377 AAGTATGCTCCATTGTTAATCCGAAGATTCTCACTTTGGTCAACGAAGAAAGACCCTGAT 436
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 60 AAGTATGTTCCATTGTTAATCCGAAGATTCTCACTTTGGTCTACGAAGAAAGACCCTGAT 119
Query 437 CTCGAATCTGCTCTCTCGCGTAACAAGCGATGGATTGTTAACAGTCGGCTCAAGAACATT 496
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 120 CTCGAATCTGCTCTCTCGCGTAACAAGCGATGGATAGTTAACAGCCGGCTCAAGAACATT 179
Query 497 ATCTTAAGGTGTCCCAATCAGGTTGCATCGATTAAGTTTCTACAGAAGAAGTTTAAGACT 556
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 ATCTTAAGGTGTCCCAACCAGGTTGCATCGGTTAAGTTTCTACAGAAGAAGTTTAAGACT 239
Query 557 CTTGATCTTCAGGGGAAAGCCTTGAATTGGCTTAAGAAATACCCTTGTTGTTTCCATGTT 616
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 240 CTTGATCTACAGGGGAAAGCCTTGAATTGGCTTAAGAAGTACCCTTGTTGTTTCCACCTT 299
Query 617 TATCTCGAGAACGATGAGTATTACTGTAGGTTAACGAAACCGATGATGACGCTTGTGGAA 676
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 TATCTCGAGAACGATGAGTATTACTGTCGGTTAACGAAACCGATGATGACGCTTGTGGAA 359
Query 677 GAGGAAGAGTTGGTCAAAGATACACAAGAGCCTGTACTCGCAGATAGGCTTGCAAAGCTG 736
|| ||||| |||||||||||||||||||||||| | || || ||||||||||||||||||
Sbjct 360 GAAGAAGAATTGGTCAAAGATACACAAGAGCCTCTGCTTGCTGATAGGCTTGCAAAGCTG 419
Query 737 CTTATGTTGAGTGTTAATCAGCGTCTCAATGTCGTGAAGCTTAACGAGTTTAAGCGGAGC 796
|||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 420 CTTATGATGAGTGTTAATCAGCGCCTTAATGTCGTGAAGCTTAACGAGTTTAAGCGGAGT 479
Query 797 TTTGGATTCCCTGATGATTATGTTATCAGAATAGTTCCAAAGTACTCAGATGTGTTTCGG 856
||||||||||||||||||||||| ||||| ||| | |||||||||||||||||||||||
Sbjct 480 TTTGGATTCCCTGATGATTATGTGATCAGGATACTACCAAAGTACTCAGATGTGTTTCGA 539
Query 857 TTAGTGAATTATAGTGGTAGGAAGAGTTCAATGGAGATTGAGCTTTTGTTGTGGAAGCCT 916
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 540 TTAGTAAATTATAGTGGGAGGAAGAGTTCAATGGAGATCGAGCTTTTGTTGTGGAAGCCT 599
Query 917 GAGTTGGCTGTCTCTGCAGTTGAAGCAGCAGCAAAGAAATGTGGCTCTGAGCCTAGTTTC 976
||||||||||| |||||||| ||||||||||| ||||| ||||||||| |||||||||||
Sbjct 600 GAGTTGGCTGTTTCTGCAGTGGAAGCAGCAGCGAAGAATTGTGGCTCTCAGCCTAGTTTC 659
Query 977 TCTTGCTCTCTACCTTCCACGTGGACCAAACCGTGGGAGAGGTTCATGGAGTTTAATGCC 1036
||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 660 TCTTGCTCTTTACCTTCCACATGGACCAAACCGTGGGAAAGGTTTATGGAGTTTAATGCC 719
Query 1037 TTTCCTTACATATCTCCGTATGAGGATCATGGGGATCTTGTTGAGGGTTCAAAGGAGAGT 1096
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTCCTTACATATCTCCGTATGACGATCATGGGGATCTTGTTGAGGGTTCAAAGGAGAGT 779
Query 1097 GAGAAGAGAAGTGTTGGTTTGGTGCACGAGTTACTCTCGTTGACGTTGTGGAAAAAGCTG 1156
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 780 GAGAAGAGAAGCGTTGGTTTGGTGCACGAATTACTCTCGTTAACGTTGTGGAAGAAGCTG 839
Query 1157 TCAATCGTAAAGCTGAGTCATTTCAAGAGGGAATTTGGGTTACCGGAGAAGCTAAATGGT 1216
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 840 TCTATCGTAAAGCTGAGTCATTTCAAGAGGGAATTTGGGTTGCCGGAGAAGCTAAATGCT 899
Query 1217 ATGCTTCTGAAGCATCCAGGCATATTCTACGTTGGAAACAAGTATCAGGTTCACACTGTG 1276
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 900 ATGCTTCTGAAGCATCCAGGCATATTCTACGTCGCAAACAAGTATCAGGTTCACACTGTG 959
Query 1277 ATCCTCAGAGAAGGATACAATGGCTCGGAATTGATTCACAAGGACCCGCTCGTTGTTGTG 1336
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATCCTTAGAGAAGGATACAATGGCTCGGAATTGATTCACAAGGACCCGCTCGTTGTTGTG 1019
Query 1337 AAGGATAAATTTGGGGAATTGATGCAGCAGGGCTTGTATGAGTATAATCACAGGCGATAT 1396
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AAGGAAAAATTTGGGGAACTGATGCAGCAGGGCTTGTATGAGTATAATCACAGGCGATAT 1079
Query 1397 TTGGCTAATCTagagaagaagagagagaAAGGTATTGAATCTTTGAAGCCTGTGGTGCGA 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TTGGCTAATCTAGAGAAGAAGAGAGAGAAAGGTATTGAATCTTTGAAGCCTGTGGTGCGA 1139
Query 1457 AAGAAAGACAGGAACCACGATCGAGATGATGTCGATGAAGAAGAAAACCATGGGGATCGA 1516
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AAGAAAGACAGGAATCACGATGGAGATGATGTCGATGAAGAAGAAAACCATGGGGATCGA 1199
Query 1517 CCAGGTGGTCTGTTTGATCCAGAAGAGAGAAAAAGGTTTTATCAGATTCTCTTCAGTGAC 1576
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CCAGGTGGTCTGTTCGATCCAGAAGAGAGAAAAAGGTTTTATCAGATTCTCTTCAGTGAC 1259
Query 1577 ACCCAATAAGAACATT 1592
||||||||||||||||
Sbjct 1260 ACCCAATAAGAACATT 1275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82770102385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5