BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G31305.1

Length=643
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933673 jgi|Araly1|933673|scaffold_401661.1                        484    2e-136
  Ahg316470 jgi|Araly1|316470|fgenesh1_pm.C_scaffold_2001503           174    6e-43 


> Ahg933673 jgi|Araly1|933673|scaffold_401661.1
Length=367

 Score =  484 bits (262),  Expect = 2e-136
 Identities = 327/358 (91%), Gaps = 5/358 (1%)
 Strand=Plus/Plus

Query  71   AAAGCTAATCTTCAGCTATGAGCACAGCAACAAGGCCTTCCTCTTCAGCAACAACTTCTG  130
            ||| || ||||| ||||||||||||||| ||||||||||| ||||| |||||||| ||||
Sbjct  4    AAATCTTATCTTGAGCTATGAGCACAGCGACAAGGCCTTCTTCTTCTGCAACAACCTCTG  63

Query  131  TCATATTAGAAAACCCTGTTTCTCAATCACAACCTACTGAAAGATTAGTGCTTCGGTTGA  190
            | |||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||
Sbjct  64   TTATATTAGAAAACCCTGTTTCTCAATCCCAGCCTACTGAAAGATTAGTCCTTCGCTTGA  123

Query  191  ACCGGAAGAAGAAGAAAGTTTCATGGAAAGATGGGACTGTAGACAATGAGTTTATGCAGA  250
            |||| |||||||||||||||||||||||||| ||||| || ||||| ||||| |||||||
Sbjct  124  ACCGTAAGAAGAAGAAAGTTTCATGGAAAGACGGGACCGTTGACAACGAGTTCATGCAGA  183

Query  251  AGAAGAGTTCGAAGAAGTGTTGCATCTTTCATAAACAGAAGCCTTTTGATGAGGATGACA  310
            |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct  184  AGAAGAGTTCCAAGAAGTGTTGCATCTTTCACAAACAGAAGCCCTTTGATGAGGATGACA  243

Query  311  GTGAAGAAGAAGATGATAA-CA--ACCATCACT-GTGATCATAACCATGAACACTCCGAA  366
            |||||||||||||||| || ||  ||||||| |  ||||||| ||||||| ||||| |||
Sbjct  244  GTGAAGAAGAAGATGACAACCATCACCATCA-TCATGATCATGACCATGACCACTCTGAA  302

Query  367  TCTGGTGAGGCATCTTCTTCTAATGATTCTAAAGCCGTTGACTAATCAATCAGGTTTT  424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  303  TCTGGTGAGGCATCTTCTTCTAATGATTCTAAAGCCGTTGACTAATCAATCAGGTTTT  360


> Ahg316470 jgi|Araly1|316470|fgenesh1_pm.C_scaffold_2001503
Length=291

 Score =  174 bits (94),  Expect = 6e-43
 Identities = 146/171 (85%), Gaps = 4/171 (2%)
 Strand=Plus/Plus

Query  241  TTTATGCAGAAGAAGAGTTCGAAGAAGTGTTGCATCTTTCATAAACAGAAGCCTTTTGAT  300
            |||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||
Sbjct  121  TTTATGCAGAAGAAGAGTTCAAAGAAATGTTGTATCTTTCATAAACAAAAGCCCTTTGAT  180

Query  301  GAGGATGACAGTGAAGAAGAAGATG-ATAA-CA-ACCATCACTGTGATCATAACCATGAA  357
            ||||||||||| ||||||||||| | | ||  | |  | |||  | | ||| ||||||||
Sbjct  181  GAGGATGACAGCGAAGAAGAAGAAGAAGAAGAAGATAACCACCATCACCATCACCATGAA  240

Query  358  CACTCCGAATCTGGTGAGGCATCTTCTTCTAATGATTCTAAA-GCCGTTGA  407
            |||||||||||||||||||| || |||||||| ||||||||| || |||||
Sbjct  241  CACTCCGAATCTGGTGAGGCCTCGTCTTCTAACGATTCTAAAAGCAGTTGA  291



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23559962706


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5