BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31310.1 Length=654 Score E Sequences producing significant alignments: (Bits) Value Ahg344902 jgi|Araly1|344902|fgenesh1_pg.C_scaffold_4001244 850 0.0 > Ahg344902 jgi|Araly1|344902|fgenesh1_pg.C_scaffold_4001244 Length=564 Score = 850 bits (460), Expect = 0.0 Identities = 533/568 (94%), Gaps = 5/568 (1%) Strand=Plus/Plus Query 69 ATGGGAGGTTTAGGCTCACCATGTGGAGGATGCAAGTTCTTGCGTAGGAAATGTGTAGAG 128 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGAGGTTTAGGCTCACCATGTGGAGGATGCAAGTTCTTGCGTAGGAAATGTGTAGAA 60 Query 129 GGTTGTGTATTTGCACCATACTTTTGCTACGAAGAAGGATCTTCTAATTTTGCAGCCATT 188 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 61 GGTTGTGTATTTGCACCATACTTTTGCTACGAAGAAGGATCTTCTAATTTTTCAGCCATT 120 Query 189 CACAAAGTGTTTGGAGCTAGCAACTTCTCTAAGCTCATTTCTCATCTCCCTGATCATGAC 248 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 121 CACAAAGTGTTTGGAGCCAGCAACTTCTCTAAACTCATTTCTCATCTCCCTGATCATGAC 180 Query 249 CGATGTGACGCCGTACGAACCATCTCTTACGAGGCTCACTCTCGTCTCCATGATCCTATT 308 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 181 CGATGTGACGCCGTACGAACCATCTCTTACGAGGCCCACTCTCGTCTCCACGATCCTATT 240 Query 309 TACGGCTGCGTCTCCCAAATCTTCTCCCTCCAACAACAGGTTGTTAGTTTACAAGCACAA 368 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 241 TACGGTTGCGTCTCCCAAATCTTCTCCCTCCAACAACAGGTTGTTAGTTTACAAGCTCAA 300 Query 369 GTGGTTCTACTTAGAGAAGAAGCTTCGAGAAGGTTCCCTCAAGATGATCCTGGTTGTAAT 428 ||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||| ||| Sbjct 301 GTGGTCCTACTTAGAGAAGAAGCTTCTAGAAGGTCCCCTCAAGAGGATCCTGGTTGCAAT 360 Query 429 ATGAAGCAACAAGAAAAGGTTCTTGCTCAACAAATGCCACAAGATCTTCACAATTGGTTT 488 |||||||| |||||||| || ||||||| |||||||||||||||||||||||||||||| Sbjct 361 ATGAAGCAGCAAGAAAAACTTATTGCTCAGCAAATGCCACAAGATCTTCACAATTGGTTT 420 Query 489 CACCAAGGAATCTTGGACTCAGACTTCGACCCAATGAGTGGTACTACACGCGACAATGAG 548 |||||||||||||||||||||||| |||||| ||||||||||||| |||||||| ||| | Sbjct 421 CACCAAGGAATCTTGGACTCAGACCTCGACCTAATGAGTGGTACTCCACGCGACCATGGG 480 Query 549 CGGTCCATGGATCAT-AATGAGTCTCCTTGTAGCTCAAATGAATCACTTAATTACTACCA 607 || ||| ||||| | |||||||||| |||||||||||||||||| ||| | |||| || Sbjct 481 CGATCCTTGGAT-AGGAATGAGTCTCTTTGTAGCTCAAATGAATCTCTT--T-ACTATCA 536 Query 608 GGAGGTCAATTTTCCTTGGTCTGTTTGA 635 ||||||||||||||||||||||||||| Sbjct 537 AGAGGTCAATTTTCCTTGGTCTGTTTGA 564 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23979314793 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5