BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31310.1
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344902 jgi|Araly1|344902|fgenesh1_pg.C_scaffold_4001244 850 0.0
> Ahg344902 jgi|Araly1|344902|fgenesh1_pg.C_scaffold_4001244
Length=564
Score = 850 bits (460), Expect = 0.0
Identities = 533/568 (94%), Gaps = 5/568 (1%)
Strand=Plus/Plus
Query 69 ATGGGAGGTTTAGGCTCACCATGTGGAGGATGCAAGTTCTTGCGTAGGAAATGTGTAGAG 128
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAGGTTTAGGCTCACCATGTGGAGGATGCAAGTTCTTGCGTAGGAAATGTGTAGAA 60
Query 129 GGTTGTGTATTTGCACCATACTTTTGCTACGAAGAAGGATCTTCTAATTTTGCAGCCATT 188
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 GGTTGTGTATTTGCACCATACTTTTGCTACGAAGAAGGATCTTCTAATTTTTCAGCCATT 120
Query 189 CACAAAGTGTTTGGAGCTAGCAACTTCTCTAAGCTCATTTCTCATCTCCCTGATCATGAC 248
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 CACAAAGTGTTTGGAGCCAGCAACTTCTCTAAACTCATTTCTCATCTCCCTGATCATGAC 180
Query 249 CGATGTGACGCCGTACGAACCATCTCTTACGAGGCTCACTCTCGTCTCCATGATCCTATT 308
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 181 CGATGTGACGCCGTACGAACCATCTCTTACGAGGCCCACTCTCGTCTCCACGATCCTATT 240
Query 309 TACGGCTGCGTCTCCCAAATCTTCTCCCTCCAACAACAGGTTGTTAGTTTACAAGCACAA 368
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 TACGGTTGCGTCTCCCAAATCTTCTCCCTCCAACAACAGGTTGTTAGTTTACAAGCTCAA 300
Query 369 GTGGTTCTACTTAGAGAAGAAGCTTCGAGAAGGTTCCCTCAAGATGATCCTGGTTGTAAT 428
||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||| |||
Sbjct 301 GTGGTCCTACTTAGAGAAGAAGCTTCTAGAAGGTCCCCTCAAGAGGATCCTGGTTGCAAT 360
Query 429 ATGAAGCAACAAGAAAAGGTTCTTGCTCAACAAATGCCACAAGATCTTCACAATTGGTTT 488
|||||||| |||||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct 361 ATGAAGCAGCAAGAAAAACTTATTGCTCAGCAAATGCCACAAGATCTTCACAATTGGTTT 420
Query 489 CACCAAGGAATCTTGGACTCAGACTTCGACCCAATGAGTGGTACTACACGCGACAATGAG 548
|||||||||||||||||||||||| |||||| ||||||||||||| |||||||| ||| |
Sbjct 421 CACCAAGGAATCTTGGACTCAGACCTCGACCTAATGAGTGGTACTCCACGCGACCATGGG 480
Query 549 CGGTCCATGGATCAT-AATGAGTCTCCTTGTAGCTCAAATGAATCACTTAATTACTACCA 607
|| ||| ||||| | |||||||||| |||||||||||||||||| ||| | |||| ||
Sbjct 481 CGATCCTTGGAT-AGGAATGAGTCTCTTTGTAGCTCAAATGAATCTCTT--T-ACTATCA 536
Query 608 GGAGGTCAATTTTCCTTGGTCTGTTTGA 635
|||||||||||||||||||||||||||
Sbjct 537 AGAGGTCAATTTTCCTTGGTCTGTTTGA 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23979314793
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5