BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31340.1
Length=2140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482061 jgi|Araly1|482061|fgenesh2_kg.4__1121__AT2G31340.1 3454 0.0
> Ahg482061 jgi|Araly1|482061|fgenesh2_kg.4__1121__AT2G31340.1
Length=2138
Score = 3454 bits (1870), Expect = 0.0
Identities = 2054/2143 (96%), Gaps = 11/2143 (1%)
Strand=Plus/Plus
Query 2 AACGCTTAAACCCTCC-ATGGTTTTGGATTGAACATTTCCCCTGAGATTTGGGAGTGTCC 60
|||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1 AACGCTTAAACCCTCCAATGGTTTT-GATTCAACATTTCCCCTGAGATTTGGGAGTGTCC 59
Query 61 TTAAACCCCATACACTGATCGAGCTCAAGAAGAA---GGAGAAGCAGAGAAATGGTGAAT 117
||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 60 TTAAA-CCCATACACTGATCGAGCTCAAGAAGAAGGTGGAGAAGCAGAGAGATGGTGAAT 118
Query 118 AAACATTGGAAGATAATTCCAAAGCCGCTTCTAGAAACAGTTCTCAACAACCATGTCCAA 177
|||| ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 119 AAACCTTGGAAGATAATTCCAAGGCCACTTCTAGAAACAGTACTCAACAACCATGTCCAA 178
Query 178 CGCCACCGTGTTCCTCAGCCTCTCATCCTCCATGGTCCTCGTGGCGTCGGCAAAACCACA 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CGCCACCGTGTTCCTCAGCCTCTCATCCTCCATGGTCCTCGTGGCGTCGGCAAAACCAC- 237
Query 238 T-TGATCCTCAACCGTCTACTCGGAGATTGGAACAAAGGGCCACATCTCGCTGGCTATGT 296
| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TCTCATTCTCAACCGTCTACTCGGAGATTGGAACAAAGGGCCACATCTCGCTGGCTATGT 297
Query 297 AGATTTTGCGCAATCGATAACGGAACACCATCCAGATCACCACCAATCATATCCATGGAC 356
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 298 AGATTTTGCGCAATCGATAACGGAACACCACCCAGATCACCAACAATCATATCCATGGAC 357
Query 357 GTCTTGGACCAGTGTTGACCCACCGTTGTTGTCCAATTGCAAAACCCAGCTCGAGAATTG 416
||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 358 GTCTTGGACTAGTGTTGACCCACCATTGTTGTCGAATTGCAAAACCCAGCTCGAGAATTG 417
Query 417 TCTTGAATCTATGAGTCACAAAGCTATCAAACTTGGGAGTATAAGCTCGCAGCAGATTTT 476
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 418 TCTTGAATCTATGAGTCACAAAGCTATCAAACTTGGGAGTTTAAGCTCGCAGCAGATTTT 477
Query 477 CACTACTATGAACAAATGGTATGGTCTTAATACTGCACTTCGTCGTATACTTCAGGGTTA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 478 CACTACTATGAACAAATGGTATGGTCTTAATACTGCACTTCGTCGTATACTTCAGGGGTA 537
Query 537 TAACATTGCTGTTCCAGAGAAAGTCTCGGTTTCATTTCTCTGGGAACGGGCTGTGTATGC 596
||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 538 TAACATTGCCGTTCCAGAGAAAGTCTCCGTTTCATTTCTCTGGGAACGGGCAGTGTATGC 597
Query 597 CCTATCTGTTCGACAAAATGCCGATGAGATTGATGGGTTGCTTGAATTGGAAGAGAAAGG 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GCTATCTGTTCGACAAAATGCCGATGAGATTGATGGGTTGCTTGAATTGGAAGAGAAAGG 657
Query 657 TAATAGCTTGTCCGTTGAAGAGGCTTCGTATTATAGAGAGACTGCTTTTGCGTTAAGATT 716
|||||||||||| || |||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 658 TAATAGCTTGTCTGTAGAAGAGGCGTCGTACTATAGAGAGACCGCTTTTGCGTTAAGATT 717
Query 717 GGCTAAAGAGGTTATTAAGGTGCACCAGGGTTGGAAAGCCAATGCCATTGCTCATCTTAA 776
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GGCTAAAGAGGTAATAAAGGTGCACCAGGGTTGGAAAGCCAATGCCATTGCTCATCTTAA 777
Query 777 TCGAACTAATGGGTTTTCGAGAACTTTAGCGAATTCATGTACTGATTGGCCGTTGCTAAT 836
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 778 TCGAACTAATGGGTTTTCGAGAACATTAGCGAATTCTTGTACTGATTGGCCGTTGCTAAT 837
Query 837 GCTTGAGTTGTTATCACAAGCTGCAGAGATTGGCTTCTTCCAGCCTAAGCTGGTCTTGAA 896
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 838 GCTTGAGTTGTTATCACAAGCTGCAGAGATTGGTTTCTTCCAGCCTAAGCTGGTCTTAAA 897
Query 897 CAACATTGAAATCTTGAAGAGGGCTATTCAGACTGATGATTCAACAGTCTCAGCGTCAAT 956
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 898 CAACATTGAAATCTTGAAGAGGGCTATTCAGACTGATGATTCAACTGTCTCAGCGTCAAT 957
Query 957 GTACCATGACAATCTTATTTGGAGAATAATAGCGTTAGGTGCGAATGAGCGCTGTCTACC 1016
|||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||
Sbjct 958 GTACCATGACAATCTTATATGGAGAATAATAGCTTTAAGTGCGAATGAGCGCTGTCTACC 1017
Query 1017 TGTCCTATTCGTGACTTCGGACAGCTACTATTCATATCAAGCCTTTGTTGACTACGGGTT 1076
|||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 1018 TGTCCTATTCGTGACTTCAGACAGCTATTACTCATATCAAGCCTTTGTTGACTACGGGTT 1077
Query 1077 TCCAGACATTTTCATCTCTCGTGAGACATTTGGATGGAATCCTCAAGAAGCAAAATTACA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TCCAGACATTTTCATCTCTCGTGAGACATTTGGATGGAATCCTCAAGAAGCAAAATTACA 1137
Query 1137 CATGGTTCCTGATTACTTCAGTGCTTCGGAGTGGACTATCATTGCTGATGTTCTTGGTGC 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CATGGTTCCTGATTACTTCAGTGCTTCGGAGTGGACTATCATTGCTGATGTTCTTGGTGC 1197
Query 1197 GAATTCTCGGCATCTATTTGAGCTTTATGCGCTTAAACAAAGTAATCATTACCAGAGTTT 1256
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CAATTCTCGGCATCTATTCGAGCTTTATGCGCTTAAACAAAGTAATCATTACCAGAGTTT 1257
Query 1257 GATGGGGAGTAAAGCAGGTACATTTGAAGATATTGTGGATGCATACTTGGCATATTTACA 1316
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GATGGGGAGTAAAGCAGGTACGTTTGAAGATATTGTGGATGCATACTTGGCATATTTACA 1317
Query 1317 AGTTGCTGTGGTTAATCCTGCAATGGACAAAGCGTTGTTGCGGCTTCAACGGTATGCCAC 1376
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 1318 AGTTGCTGTGGTTAATCCTGCAATGGAAAAAGCTTTGTTGCGGCTTCAACGGTATGCTAC 1377
Query 1377 TGATGTACGAAAAGGAAGCATTCCGTATGAAAAATTACGTTTTGGTGCTTCATGGAGGCA 1436
||||| ||| |||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1378 TGATGCACGGAAAGGAAGCATTCCGTATGAAAAATTACATTTTGGTGCTCCATGGAGGCA 1437
Query 1437 TCCTCCGCAAACTGAGGATCCTACACAGAACTCTGAGTGGGCTAAAATTCAGCTGATGGA 1496
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1438 TCCTCCGCAAACTGAGGATCCTACTCTTAACTCTGAGTGGGCTAAAATTCAGCTGATGGA 1497
Query 1497 TTTTGTCCAAGCTCTTGTCAATACAGAATTCGCGGTAAATTATTTGGGTGACTATAGCCT 1556
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TTTTGTTCAAGCTCTTGTCAATACAGAATTCGCGGTAAATTATTTGGGTGACTATAGCCT 1557
Query 1557 TGAGATCTTTGAAGACCCTTCAGCTATGGCATTGGTTGAGGTTGGGATACTGTATACTCA 1616
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TGAGATCTTTGAAGACCCTTCTGCTATGGCATTGGTTGAGGTTGGGATACTGTATACTCA 1617
Query 1617 GCGAGATCCATCTTTTTTCCGGCCAATATCTCAAGGCATTAAAAGATGCCTTGTTAGATG 1676
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1618 GCGAGATCCATCTTTTTTCCGGCCAATATCTCAAGGCATTAAAAGATGCCTTGTAAGATG 1677
Query 1677 GCTCATCCAAGAGCGGATGCAGATGAGTTATTGGAGCTCAACAAAATATTGGTGGCAGAG 1736
||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||| ||
Sbjct 1678 GCTCATCCAAGAGCGGATGCAAATGACTTACTGGAGCTCAACCAAATATTGGTGGCAAAG 1737
Query 1737 AATCATCCGGGGTCGTTATTACAAGCATTTAATGCTTGGCTACAGAACATAGGCAGTTTC 1796
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1738 AATCATCCGGGGTCGTTATTACAAGCATTTGATGCTTGGCTACAGAACATAGGCAGTTTC 1797
Query 1797 ACACAGGTTTTGTTTTCACAGGAACGTCGATGAAATCTCGGTATCTTGTGCACGTACACA 1856
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||
Sbjct 1798 ACACAGGTTTTGTTTTCACAGGAACGTTGATGAAATCTCGGTATCTCGTGCACGTAGACA 1857
Query 1857 TGTCGGACTCAGGTTTTACCGTGAAGTAGAAAACATAAAGGGGCGTTGTTTTTGTTGCCG 1916
||||||||||| |||||||||||||||| |||||||||| ||||||| |||| ||||||
Sbjct 1858 TGTCGGACTCATATTTTACCGTGAAGTAGGAAACATAAAGAGGCGTTGGTTTTATTGCCG 1917
Query 1917 TCAAGGTCTGACTTTTAGTAAAATCACATTAAGAAGAGACGTCGGAGGGAAAAACCTCCA 1976
|||| ||||| |||||||| ||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1918 TCAATGTCTGCCTTTTAGTGAAATCGCATTAAGAAGAGAGGTCGGAGGGAAAAACCTCCA 1977
Query 1977 GCTACAGAACGGTGTAATCGTGTAAGTGGGAATACATTGCCATGAGAACGTCTTT-CTCT 2035
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1978 GCTACGGAACGGTGTAATCGTGTAAGTGGGAATACATTGCCATGAGAACGTCTTTTCTCT 2037
Query 2036 TCAGACGCTGTATATAAAGCGCATGTTGCTGTGTTTATGTCGAtttttttCAAGTAAAAT 2095
||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 2038 TCAGACGCTGTATATAAAGCGCATGTTGCTGTGTT-ATGT-GATTTTTTTCAGGTAAAAT 2095
Query 2096 TATAAGTCAAAGAATTCAATTATTCACTGTATTGTCTACCTTT 2138
||||||||||| | || ||||||||||||||||||||||||||
Sbjct 2096 TATAAGTCAAATACTTGAATTATTCACTGTATTGTCTACCTTT 2138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80522777930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5