BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31345.1
Length=569
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933679 jgi|Araly1|933679|scaffold_401667.1 405 2e-112
> Ahg933679 jgi|Araly1|933679|scaffold_401667.1
Length=253
Score = 405 bits (219), Expect = 2e-112
Identities = 242/253 (96%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 73 GAAAAACTAAAATTCTAAACATGATGAAAAAACAATTGGTGGTCGTAGTTATGTTAGTTG 132
|||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 GAAAAAATAAAATTCTAAGCATGATGAAGAAACAATTGGTGGTCGTAGTTATGTTAGTTG 60
Query 133 TTATGTTCGTTGTTTTCTTGGACGCTACGCAAGTTGAAGCCATGAGGCCTTTCCCAGATC 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TTATGTTCGTTGTTTTCTTGGACGCTACGCAAGTTGAAGCCATGAGGCCTTTCCCGGAGA 120
Query 193 CCGTAGATGAGATCCGGCTTCTGTTTCAGGCGTTGCAAAGAGGACCGGTCCGTGGTTCTG 252
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 CCGTAGATGAGATCCGGCTTCTGTTTCAGGCGTTGCAAAGAGGTCCGGTCCGTGGTTCTG 180
Query 253 GTCGGAACGGTTGCACTAATATTCCTCGCGGTTCAGGCAGATGCCATAACTGAGCTGTCT 312
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTCGGAACGGTTGCACCAATATTCCTCGCGGTTCAGGCAGATGCCATAACTGAGCTGTC- 239
Query 313 TATACGAATCTTC 325
| ||||||||||
Sbjct 240 -ACACGAATCTTC 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20794796005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5