BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31350.1
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320885 jgi|Araly1|320885|fgenesh1_pm.C_scaffold_4000942 1624 0.0
Ahg311691 jgi|Araly1|311691|fgenesh1_pm.C_scaffold_1000471 952 0.0
> Ahg320885 jgi|Araly1|320885|fgenesh1_pm.C_scaffold_4000942
Length=975
Score = 1624 bits (879), Expect = 0.0
Identities = 943/975 (97%), Gaps = 0/975 (0%)
Strand=Plus/Plus
Query 160 ATGCAAACCATCTCGAAAGCTTCTTCTGCCACCTCCTTTTTTCGATGTTCTAGGAAGCTA 219
|||||||||||||| |||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 1 ATGCAAACCATCTCAAAAGCTTCTTCTGCTATCTCCTTCTTTCGATGTTCTAGGAAGCTA 60
Query 220 TCAAGCCAGCCATGTGTGAGACAGCTTAACATAAGAAAGAGTCTTGTGTGCAGAGTGATG 279
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 61 TCAAGCCAGCCATGTGTGAGACAGCTTAACATCAGAAAGGGTCTTGTGTGCAGAGTGATG 120
Query 280 AAGCTGGTCTCTTCACCTCTTAGGACTTTGCGTGGTGCTGGTAAATCTATCCGAGTTTCA 339
|||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| |||
Sbjct 121 AAGCTGGTCTCTTCCCCTCTTCGGACTTTGCGTGGTGCTGGTAAATCTATTCGAGTGTCA 180
Query 340 AAGTTCTGCAGTGTCTCCAATGTCTCCTCATTGCAAATTGAACTGGTGCCTTGCCTTAAG 399
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 AAATTCTGCAGTGTCTCCAATGTCTCTTCATTGCAAATTGAACTGGTGCCTTGCCTTAAG 240
Query 400 GATAACTATGCTTATATCTTGCATGACGAGGATACTGGTACAGTTGGGGTGGTTGACCCT 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATAACTATGCTTATATCTTGCATGACGAGGATACTGGTACAGTTGGGGTGGTTGACCCT 300
Query 460 TCTGAAGCTGAACCTATTATCGATTCGTTGAAGAGGAGTGGTCGTAATCTAACATATATA 519
||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 301 TCTGAAGCTGAACCTGTTATCGATTCGTTGAATAGGAGTGGTCGAAATCTAACATATATA 360
Query 520 TTAAATACACATCATCATTATGATCACACTGGTGGGAATTTGGAATTAAAAGACAGGTAC 579
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGAATACACATCATCATTATGATCACACTGGTGGGAATTTGGAATTAAAAGACAGGTAC 420
Query 580 GGGGCAAAGGTGATTGGCTCAGCTATGGATAAAGACCGGATTCCTGGAATTGATATGGCC 639
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 GGGGCAAAGGTGATTGGCTCAGCTATGGATAAAGACCGGATTCCTGGAATTGATATAGCA 480
Query 640 TTGAAGGATGGTGACAAATGGATGTTTGCTGGCCATGAAGTCCATGTTATGGATACTCCT 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGAAGGATGGTGACAAATGGATGTTTGCTGGCCATGAAGTCCATGTTATGGATACTCCT 540
Query 700 GGCCACACAAAAGGCCATATCAGCTTATACTTTCCAGGATCACGAGCGATCTTCACCGGG 759
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 GGCCACACAAAAGGGCATATCAGCTTATACTTTCCACGATCACGAGCGATCTTCACCGGG 600
Query 760 GACACGATGTTTAGCTTATCATGTGGTAAACTCTTTGAAGGCACTCCTAAGCAGATGCTT 819
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 GACACGTTGTTTAGCTTATCATGTGGTAAACTCTTCGAAGGCACTCCTAAGCAGATGCTT 660
Query 820 GCTTCTCTCCAAAAGATCACATCTTTACCAGATGACACAAGCATATACTGTGGTCATGAA 879
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCTTCTCTCCAAAAGATCATATCTTTACCAGATGACACAAGCATATACTGTGGTCATGAA 720
Query 880 TATACACTGAGTAATTCCAAGTTTGCGTTGTCTCTAGAGCCAAACAACGAAGTACTTCAG 939
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 TATACACTGAGTAATTCCAAGTTTGCGTTGTCTCTAGAGCCAAACAACGAAGTACTCCAG 780
Query 940 TCCTATGCAGCTCATGTTGCAGAGCTCCGAAGCAAGAAATTACCAACGATTCCGACAACA 999
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 781 TCTTATGCAGCTCATGTTGCAGAGCTCCGTAGCAAGAAATTACCTACGATTCCGACAACA 840
Query 1000 GTGAAGATGGAGAAAGCTTGTAACCCCTTCCTCCGCAGCTCAAATACAGATATCCGTCGG 1059
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 841 CTGAAGATGGAGAAAGCTTGTAACCCCTTCCTCCGCAGTTCAAATACAGATATTCGTCGG 900
Query 1060 GCTTTACGCATTCCAGAGGCCGCAGATGAAGCAGAAGCTTTAGGGATTATCCGGAAAGCA 1119
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 GCTTTACGCATTCCAGAGACCGCAGATGAAGCAGAAGCTTTAGGGATTATCCGAAAAGCA 960
Query 1120 AAGGATGATTTCTAA 1134
|||||||||||||||
Sbjct 961 AAGGATGATTTCTAA 975
> Ahg311691 jgi|Araly1|311691|fgenesh1_pm.C_scaffold_1000471
Length=1458
Score = 952 bits (515), Expect = 0.0
Identities = 795/928 (86%), Gaps = 27/928 (3%)
Strand=Plus/Plus
Query 228 GCCATGTGTGAGACAGCTTAACATAAGAAAGAGTCTTGTGTGCAGAGTG--ATGAAGCTG 285
||| || |||||||||||| || | |||||| ||||||| | | | ||| ||||||||
Sbjct 543 GCCTTGCGTGAGACAGCTTCACCTCAGAAAGGGTCTTGTCT-CTG-GTGCCATGAAGCTT 600
Query 286 GTCTCTTCACCTCTTAGGACTTTGCGTGGTGCTGGTAAATCTATCCGAGTTTCAAAGTTC 345
||||||| |||||||||||||||||||||||||||||||| | || |||||| ||||
Sbjct 601 TTCTCTTCCCCTCTTAGGACTTTGCGTGGTGCTGGTAAATCCGTTCGCTTTTCAAGGTTC 660
Query 346 TGCAGTGTCTCCAATG--TC-TCCTCATTGCAAATTGAACTGGTGCCTTGCCTTAAGGAT 402
|||||||||||||||| || |||||||||||||||||||||||||| || |||| |||
Sbjct 661 TGCAGTGTCTCCAATGTCTCTTCCTCATTGCAAATTGAACTGGTGCCATGTCTTACGGAC 720
Query 403 AACTATGCTTATATCTTGCATGACGAGGATACTGGTACAGTTGGGGTGGTTGACCCTTCT 462
|||||||||||||| || |||||||||||||||||||||||||| || ||||||||||||
Sbjct 721 AACTATGCTTATATTTTACATGACGAGGATACTGGTACAGTTGGTGTCGTTGACCCTTCT 780
Query 463 GAAGCTGAACCTATTATCGATTCGTTGAAGAGGAGTGGTCGTAATCTAACATATATATTA 522
||||||| |||| |||| ||| | || ||| || | |||| |||||||| || ||||||
Sbjct 781 GAAGCTGTACCTGTTATGGATGCCCTGCAGAAGAATAGTCGAAATCTAACTTACATATTA 840
Query 523 AATACACATCATCATTATGATCACACTGGTGGGAATTTGGAATTAAAAGACAGGTACGGG 582
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 841 AATACACATCACCATTATGATCACACTGGTGGCAATTTGGAATTAAAAGACAGGTATGGT 900
Query 583 GCAAAGGTGATTGGCTCAGCTATGGATAAAGACCGGATTCCTGGAATTGATATGGCCTTG 642
||||||||||| ||||||||| | |||| ||||| || |||||||||||| | ||||||
Sbjct 901 GCAAAGGTGATCGGCTCAGCTGTAGATAGGGACCGCATACCTGGAATTGATGTAGCCTTG 960
Query 643 AAGGATGGTGACAAATGGATGTTTGCTGGCCATGAAGTCCATGTTATGGATACTCCTGGC 702
|| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 961 AAAGATGGTGACAAATGGATGTTTGCTGGCCATGAAGTACATGTTATGGAAACTCCTGGC 1020
Query 703 CACACAAAAGGCCATATCAGCTTATACTTTCCAGGATCACGAGCGATCTTCACCGGGGAC 762
|| || | ||||||||| || || ||||||||||| ||||||| || ||||||||||||
Sbjct 1021 CATACTAGAGGCCATATTAGTTTCTACTTTCCAGGGGCACGAGCAATTTTCACCGGGGAC 1080
Query 763 ACGATGTTTAGCTTATCATGTGGTAAACTCTTTGAAGGCACTCCTA-AGCAGATGCTTGC 821
|| | |||||||||||||||||||| ||||| ||||| ||||| | |||||||||| ||
Sbjct 1081 ACCTTATTTAGCTTATCATGTGGTAAGCTCTTCGAAGGTACTCC-AGAGCAGATGCTAGC 1139
Query 822 TTCTCTCCAAAAGATCACAT--CTTTACCAGATGACACAAGCATATACTGTGGTCATGAA 879
||||||||| | ||| | || |||| |||||||| |||||| |||||||||| ||||||
Sbjct 1140 TTCTCTCCAGAGGAT-A-ATTGCTTTGCCAGATGATACAAGCGTATACTGTGGCCATGAA 1197
Query 880 TATACACTGAGTAATTCCAAGTTTGCGTTGTCTCTAGAGCCAAACAA-CGAAGTACTTCA 938
|| ||||||||||||||||| |||||||||||| |||| |||| ||| ||||||||| ||
Sbjct 1198 TACACACTGAGTAATTCCAAATTTGCGTTGTCTATAGAACCAA-CAAACGAAGTACTCCA 1256
Query 939 GTCCTATGCAGC-TCATGTTGCAGAGCTCCGA-AGCAAGAAATTACCAACGATTCCGACA 996
||| |||||||| | | |||||||| ||||| || |||||| ||||||||||||| |||
Sbjct 1257 GTCTTATGCAGCCT-ACGTTGCAGAACTCCGTGAG-AAGAAACTACCAACGATTCCAACA 1314
Query 997 AC-AGTGAAGATGGAGAAAGCTTGTAACCCCTTCCTCCGCAGCTCA-AATACAGATATCC 1054
|| | |||||||||||||||| |||||||| || ||||||| || || ||||||||||
Sbjct 1315 ACGA-TGAAGATGGAGAAAGCCTGTAACCCGTTTCTCCGCA-CTGGGAACACAGATATCC 1372
Query 1055 GTCGGGCTTTACGCATTCCAGAGGCCGCAGATGAAGCAGAAGCTTTAGGG-ATTATCCGG 1113
|||| |||||| | |||||||| | |||||||||||||||||| | ||| ||||| |
Sbjct 1373 GTCGAGCTTTAGGTATTCCAGAAACAGCAGATGAAGCAGAAGCTCT-GGGTATTATAAG- 1430
Query 1114 AA-AGCAAAGGATGATTTCTAAGCTTAG 1140
|| ||||||||| ||||| ||||||||
Sbjct 1431 AAGAGCAAAGGACAATTTCAAAGCTTAG 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51917003935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5