BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31360.1
Length=1447
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482064 jgi|Araly1|482064|fgenesh2_kg.4__1124__AT2G31360.1 1759 0.0
Ahg919315 jgi|Araly1|919315|scaffold_100596.1 616 2e-175
> Ahg482064 jgi|Araly1|482064|fgenesh2_kg.4__1124__AT2G31360.1
Length=1302
Score = 1759 bits (952), Expect = 0.0
Identities = 1118/1189 (94%), Gaps = 47/1189 (4%)
Strand=Plus/Plus
Query 1 TCCATTAACaaaaaagagagagagaacctaaaaagaagagaagagaaagagagaTCCGAA 60
||||||||| ||| ||||||||||||| || || ||||||||||||||||||||||
Sbjct 1 TCCATTAAC---AAA-AGAGAGAGAACCT---AA-AA-AGAAGAGAAAGAGAGATCCGAA 51
Query 61 ATGTCGGTGACATCAACGGTGGAGGAGAACCACCAGAAAAATCCATCAACGCCGGCGGCG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 52 ATGTCGGTGACATCAACGGTGGAGGAGAACCACCAGAAAAATCCATCAACGCC-GC--C- 107
Query 121 GTGGAGGAGAAGAAGAAGAGGAGATGGGTGTTTTGGGATAGAAGGTGGAGGAGATTAGAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 --GGAGGAGAAGAAGAAGAGGAGATGGGTGTTTTGGGATAGAAGGTGGAGGAGATTAGAT 165
Query 181 TATGTGAAATTCTCAGCTTCTTTCACTGTTCATTCTCTTGCTCTCTTGGCTCCGTTTTAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 TATGTGAAATTCTCAGCTTCTTTCACTGTTCATTCTCTTGCTCTCTTGGCTCCGTTTTAT 225
Query 241 TTCACTTGGTCGGCTCTTTGGGTTACGTTTTTGTTTTACACCATCGGTGGTCTTGGTATC 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 TTCACATGGTCGGCTCTTTGGGTTACGTTTTTGTTTTACACCATCGGTGGTCTTGGTATC 285
Query 301 ACCGTCTCTTATCATCGCAACTTGGCTCACCGGAGTTTCAAAGTCCCTAAATGGCTTGAG 360
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 ACCGTCTCCTATCATCGGAACTTGGCTCACCGGAGTTTCAAAGTCCCTAAATGGCTTGAG 345
Query 361 TATCTCTTAGCCTATTGTGCCCTTCTCGCTATTCAGGGAGATCCGATTGATTGGGTGAGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TATCTCTTAGCCTATTGTGCCCTTCTCGCTATTCAGGGAGATCCGATTGATTGGGTGAGT 405
Query 421 ACACATCGTTACCATCACCAGTTCACGGATTCAGAACGTGATCCACATAGTCCTAAGGAA 480
|| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 406 ACTCATCGTTATCATCACCAGTTCACGGATTCAGAACGTGATCCACATAGTCCCAAGGAA 465
Query 481 GGTTTTTGGTTTAGTCATCTTCTTTGGATCTATGACTCTGCCTATCTTGTTTC-AAAGTG 539
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 466 GGTTTTTGGTTTAGTCATCTTCTTTGGATCTATGACTCTGCCTATCTTG-TTCAAAAGTG 524
Query 540 TGGAAGAAGAGCAAACGTGGAGGATTTGAAGAGGCAATGGTTTTATAGGTTTCTTCAGAA 599
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 525 TGGAAGAAGAGCAAATGTGGAGGATTTGAAGAGGCAATGGTTTTACCGGTTTCTTCAGAA 584
Query 600 AACAGTGCTATTTCACATTTTAGGATTGGGTTTCTTTCTCTTCTACCTTGGTGGCATGTC 659
|||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct 585 AACAGTGCTATTTCACATTTTAGGATTGGGCTTCATTCTCTTCTATCTTGGTGGCATGTC 644
Query 660 CTTCGTTACTTGGGGAATGGGGGTAGGAGCAGCATTGGAAGTGCACGTGACTTGCCTCAT 719
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 645 CTTCGTTACTTGGGGAATGGGGGTAGGAGCAGCGTTGGAAGTGCACGTGACTTGCCTCAT 704
Query 720 AAATTCACTCTGCCATATTTGGGGCACTCGAACTTGGAAGACCAATGACACTTCTCGTAA 779
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 AAACTCACTCTGCCATATTTGGGGCACTCGAACTTGGAAGACCAATGACACTTCTCGTAA 764
Query 780 TGTTTGGTGGTTATCGGTATTTTCATTTGGAGAGAGTTGGCACAACAATCATCATGCGTT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TGTTTGGTGGTTATCGGTATTTTCATTTGGAGAGAGTTGGCACAACAATCATCATGCGTT 824
Query 840 CGAGTCATCGGCTAGACAAGGACTTGAATGGTGGCAAATAGACATTTCGTGGTACATTGT 899
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 825 CGAGTCATCGGCTAGACAAGGACTTGAATGGTGGCAAATCGACATTTCGTGGTACATTGT 884
Query 900 TCGGTTTTTCGAAATTATCGGTTTAGCGACCGATGTGAAAGTGCCAACGGAGGCTCAACG 959
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 885 TCGGTTTTTCGAGATTATCGGTTTAGCGACCGATGTGAAGGTGCCTACGGAGGCTCAACG 944
Query 960 ACGTCGTATGGCTATAGTTCGTTGATGGAAATTGCGGGAAGAGCATAGAAAAAGGGATCT 1019
||||||||||||||| |||||||||||| | | |||||||||||||||
Sbjct 945 ACGTCGTATGGCTATCGTTCGTTGATGG------C---A------TAGAAAAAGGGATCT 989
Query 1020 ATTCTATGTAATTAGAATAATTTCTAATCCTAAAAGAG--AGT-T-ATTGTTTTATTTTC 1075
|||||||||||||||||||||||||||||||||||||| | | | |||||||| |||||
Sbjct 990 ATTCTATGTAATTAGAATAATTTCTAATCCTAAAAGAGTTATTATTATTGTTTTTTTTTC 1049
Query 1076 TTT--------ATTACTA---CTTTTGAAGTTTTGGGTTAACGCAAAGGACGTTTCCGAT 1124
||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1050 TTTTCTTCTTTATTATTATTACTTTTGAAGTTTTGGGTTAACGCAAAGGACGTTTCCGAT 1109
Query 1125 GTGTTTTGGTGTTGGACCAAGTTGATTAAGATATTTGTCGTAATTGGTA 1173
||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1110 GTGTTTTGGCGTTGGACCAAGTTGATCAAGATATTTGTCGTAATTGGTA 1158
Score = 178 bits (96), Expect = 1e-43
Identities = 115/123 (93%), Gaps = 6/123 (5%)
Strand=Plus/Plus
Query 1256 CTAAAATATCTAATCGTCGTTTACGATAAAAGAAGAAAAGCAAAAAGACATAAGACTTGT 1315
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1186 CTAAAATATCTAATCGTCGTTTACG--AAAAGAAGAAAAGCAAAAAGACATAAGACTTGT 1243
Query 1316 TCAAAAGGAGATGATATTGGTTGGTTGTTGGAGTTTATAGCCACATATAAAATTACCTTT 1375
||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1244 TCAAAAGGAGA-GATA-T-ATTGGTTGTTGGAGTTTATAGCCACATATAAA-TTACCCTT 1299
Query 1376 TTT 1378
|||
Sbjct 1300 TTT 1302
> Ahg919315 jgi|Araly1|919315|scaffold_100596.1
Length=959
Score = 616 bits (333), Expect = 2e-175
Identities = 686/852 (81%), Gaps = 42/852 (5%)
Strand=Plus/Plus
Query 154 TGGGATAGAAGGTGGAGGAGATTAGATTA-TGTGAAATTC-TCAGCTTCTTTCACTGTTC 211
||||| |||| ||||| |||||| || | ||||||| | | |||||| || ||| |
Sbjct 108 TGGGAAAGAAAGTGGAAGAGATTGGA-CATTGTGAAA-GCTTTTGCTTCTCTCTTTGTGC 165
Query 212 A-TT-CTCTTGCTCTCTTGGCTCCGTTT-TATTTCACTTGGTCGGCTCTT-TGGGT-TAC 266
| || ||| || |||||||||||| ||| ||||||||||| ||||| || | || |
Sbjct 166 ATTTCCTC-TG-TCTCTTGGCTCC-TTTCAATTTCACTTGGCCGGCT-TTAAGAGTCGCC 221
Query 267 GTTTTTGTTTTACACCATCGGTGGTCTTGGTATCACCGTCTCTTATCATCGCAACTTGGC 326
| ||| | || || | ||||| || ||||||||||||||||| || || || |||||
Sbjct 222 CTCATTG-TCTATACGGTGGGTGGGCTCGGTATCACCGTCTCTTACCACCGAAATTTGGC 280
Query 327 TCACCGGAGTTTCAAAGTCCCTAAATGGCTTGAGTATCTCTTAGCCTATTGTGCCCTTCT 386
||||||||| |||||||||||||||||||| |||||| |||| |||||||||| ||||||
Sbjct 281 TCACCGGAGCTTCAAAGTCCCTAAATGGCTCGAGTATTTCTTCGCCTATTGTGGCCTTCT 340
Query 387 CGCTATTCAGGGAGATCCGATTGATTGGGTGAGTACACATCGTTACCATCACCAGTTCAC 446
||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 341 CGCCATTCAGGGAGATCCGATTGATTGGGTGAGCACACATCGATACCATCACCAGTTTAC 400
Query 447 GGATTCAGA-ACGTGATCCACATAGTCCTAAGGAAGGTTTTTGGTTTAGTCATCTTCTTT 505
||||| || | | || |||||||||||||| ||||| |||||||||||||| || || |
Sbjct 401 AGATTCGGATAGG-GACCCACATAGTCCTAATGAAGGATTTTGGTTTAGTCACCTCCTAT 459
Query 506 GGATCTATGACT-CTGCCTATCTTGTTTCAAAGTGTGGAAGAAG-AGCAAACGTGGAGGA 563
|| | | ||| | | | |||||||| ||||||||||||||| | |||| ||||||||
Sbjct 460 GGCTATTTGA-TACCGGTTATCTTGTAGAAAAGTGTGGAAGAAGGA-CAAATGTGGAGGA 517
Query 564 TTTGAAGAGGCAATGGTTTTATAGGTTTCTTCAGAA-AACAGTGCTATTTC-ACATTTTA 621
|| |||| ||| |||| |||| || ||||| || |||||| || || | ||||| ||
Sbjct 518 CTTAAAGAAGCAGTGGTACTATAAATTCCTTCA-AAGAACAGTCCT-TTACCACATTCTA 575
Query 622 GGATTGGGTTTCTTTCTCT-TCTACCTTGGTGGCATGTCCTT-CGTTACTTGGGGAATGG 679
| ||| |||||| | |||| | ||| ||||||| |||| || | |||||||||||||||
Sbjct 576 GCATTTGGTTTCCTCCTCTAT-TACTTTGGTGGTTTGTCTTTTC-TTACTTGGGGAATGG 633
Query 680 GGGTAGGAGCAGC-ATTGGA--AGTGCACGTGACTTGCCTCATAAATTCACTCTGCCATA 736
| | || | ||| || ||| | | || |||||||||||||| || || || ||||||
Sbjct 634 GTATTGGGGTAGCGAT-GGAGCA-T-CATGTGACTTGCCTCATCAACTCTCTTTGCCATG 690
Query 737 TTTGGGGCA-CTCGAACTTGGAAGACCAATGACACTTCTCGTAATGTTTGGTGGTTATCG 795
||||||| | | || ||||||||||| ||||||||||| ||||| ||||||||| ||||
Sbjct 691 TTTGGGGAAGC-CGGACTTGGAAGACTAATGACACTTCCCGTAACGTTTGGTGGCTATCA 749
Query 796 GTATTTTCATTTGGAGAGAGTTGGCACAACAATCATCATGCGTTCGAGTCATCGGCTAGA 855
||||| || ||||||||||| |||||||||||||| || || |||||||| ||||| |||
Sbjct 750 GTATTCTCGTTTGGAGAGAGCTGGCACAACAATCACCACGCCTTCGAGTCCTCGGCGAGA 809
Query 856 CAAGGACTTG-AATGGTGGCAAATAGACATTTCGTGGTACATTGTTCGGTTTTTCGAAAT 914
||||| |||| ||||||||||||| |||||||| ||||| ||||| || ||| |||| ||
Sbjct 810 CAAGG-CTTGGAATGGTGGCAAATCGACATTTCTTGGTATATTGTCCGCTTTCTCGAGAT 868
Query 915 TATCGGTTTAGCGACCGATGTGAAAGT-GCCAACGGAG-GCTCAACGACGTCGTATGGCT 972
|||||| || || || ||||| || || ||| | ||| | |||||||||||| |||||
Sbjct 869 TATCGGCTTGGCTACTGATGTCAA-GTTGCCTTCCGAGAG-TCAACGACGTCGCATGGCA 926
Query 973 ATAGTTCGTTGA 984
|| |||||||||
Sbjct 927 ATGGTTCGTTGA 938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54126238145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5