BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31370.3
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482066 jgi|Araly1|482066|fgenesh2_kg.4__1126__AT2G31370.4 1884 0.0
Ahg919313 jgi|Araly1|919313|scaffold_100594.1 784 0.0
> Ahg482066 jgi|Araly1|482066|fgenesh2_kg.4__1126__AT2G31370.4
Length=1631
Score = 1884 bits (1020), Expect = 0.0
Identities = 1190/1266 (94%), Gaps = 36/1266 (3%)
Strand=Plus/Plus
Query 200 TGATTTAGATCTATTT-C-GG-TCGTTGATTTGGTGATAAGTCAGTAGAAATGGATAAGG 256
||||| |||||| ||| | || | ||||||||| ||||||||||||||||||||||||||
Sbjct 145 TGATTCAGATCT-TTTGCAGGATTGTTGATTTGTTGATAAGTCAGTAGAAATGGATAAGG 203
Query 257 AGAAATCTCCAGCACCTCCTTGTGGAGGTCTTCCTCCTCCATCTCCATCAGGTCGATGCT 316
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 AGAAATCTCCGGCACCTCCTTGTGGAGGTCTTCCTCCTCCATCTCCATCAGGTCGATGCT 263
Query 317 CTGCATTCTCAGAAGCTGGTCCCATTGGTCATGGTTCAGATGCTAATCGAATGAGTCATG 376
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 264 CTGCATTCTCAGAAGCTGGTCCCATTGGTCATGGATCAGATGCTAATCGAATGAGTCATG 323
Query 377 ATATTAGCCGTATGCTTGATAACCCACCTAAGAAGATTGGACATCGGCGAGCTCATTCTG 436
|||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 324 ATATGAGCCGTATGCTCGATAACCCACCGAAGAAGATTGGACATCGTCGAGCTCATTCTG 383
Query 437 AAATACTTACTCTCCCTGATGATTTGAGCTTTGATAGTGATCTTGGTGTGGTTGGTAATG 496
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 384 AAATCCTTACTCTTCCTGATGATTTGAGCTTTGATAGTGATCTTGGTGTTGTTGGTAATG 443
Query 497 CTGCTGATGGAGCTTCTTTCTCTGATGAGACTGAAGAAGATTTGCTCTCTATGTATCTTG 556
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 444 CTGCTGATGGAGCTTCTTTCTCTGATGAGACTGAAGAAGACTTGCTCTCTATGTATCTTG 503
Query 557 ATATGGATAAGTTTAATTCTTCTGCTACATCTTCTGCCCAAGTTGGTGAGCCATCAGGAA 616
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 504 ATATGGATAAGTTTAATTCTTCTGCTACATCTTCTGCTCAAGTTGGTGAGCCATCTGGAA 563
Query 617 CTGCTTGGAAAAATGAGACAATGATGCAGACAGGCACAGGCTCAACTTCCAATCCTCAGA 676
||||||||||||||||| |||||||||||||| | | ||||||||||||||||||||
Sbjct 564 CTGCTTGGAAAAATGAGTCAATGATGCAGACA-G---A--CTCAACTTCCAATCCTCAGA 617
Query 677 ATACGGTTAATAGTCTTGGCGAAAGGCCAAGAATCAGGCATCAACATAGCCAATCTATGG 736
||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 618 ATACGCTTAATAGTTTTGGCGAAAGACCAAGAATCAGGCATCAACATAGCCAATCTATGG 677
Query 737 ATGGTTCAATGAATATCAATGAGATGCTTATGT-CGGGAAATGAAGATGATTCTGCTATT 795
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 678 ATGGTTCAATGAATATCAATGAGATGCTTATGTCCGGG-AATGAAGATGATTCTGCTATT 736
Query 796 GATGCTAAGAAGTCTATGTCTGCTACTAAACTTGCTGAGCTTGCTCTCATTGATCCTAAA 855
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 737 GATGCTAAGAAGTCCATGTCTGCTACTAAACTTGCTGAGCTTGCTCTCATCGATCCTAAA 796
Query 856 CGTGCTAAGAGGATATGGGCAAACAGGCAGTCCGCAGCACGATCAAAAGAAAGGAAGACG 915
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 797 CGTGCTAAGAGGATATGGGCAAACAGGCAGTCCGCAGCAAGATCAAAAGAAAGGAAGACG 856
Query 916 AGATACATATTTGAGCTTGAGAGAAAAGTACAGACTTTGCAAACAGAGGCTACAACTCTC 975
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 857 AGATACATATTTGAGCTTGAGAGGAAAGTACAGACTTTACAAACAGAGGCTACAACTCTC 916
Query 976 TCAGCCCAGTTGACCCTCTTACAGAGAGACACAAATGGCTTGACTGTTGAAAACAATGAG 1035
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 TCAGCCCAGCTGACTCTCTTACAGAGAGACACAAATGGCTTGACTGTTGAAAACAATGAG 976
Query 1036 CTGAAGCTGCGGTTACAAACAATGGAGCAGCAGGTTCACTTGCAGGATGAACTAAACGAA 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 CTGAAGCTGCGGTTACAAACAATGGAGCAGCAGGTTCACTTGCAGGATGAACTAAACGAA 1036
Query 1096 GCACTAAAGGAGGAAATCCAGCATCTGAAGGTGTTGACTGGCCAAGTTGCTCCATCAGCG 1155
|| || ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct 1037 GCGCTTAAGGAGGAAATCCAGCACCTGAAGGTGTTAACTGGCCAAGTTGCTCCATCAACG 1096
Query 1156 TTGAACTATGGGTCGTTTGGATCAAACCAGCAGCAATTCTATTCCAACAATCAGTCAATG 1215
||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1097 CTGAACTATGGGTCCTTTGGATCAAACCAGCA--A-TTCTATTCCAACAATCAGTCAATG 1153
Query 1216 CAAACAATCTTAGCTGCAAAACAGTTCCAGCAACTTCAGATTCATTCACAGAagcagcaa 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 CAAACAATCTTAGCTGCAAAACAGTTCCAGCAACTTCAGATTCATTCACAGAAGCAGCAA 1213
Query 1276 caacaacaacaacaacaacaacagcaacaccaacagcagcagcagcaacagcaacagtat 1335
|||||||| ||||||||||| | ||||| | ||||||||| |||
Sbjct 1214 CAACAACAGCAACAACAACA-C--CAACA--A-CAGCAGCAG---------------TAT 1252
Query 1336 cagtttcaacagcaacagatgcaacagcttatgcagcagcGGCTTCAACAGCAAGAACAA 1395
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1253 CAGTTTCAACAGCAACAGATGCAACAGCTTATGCAGCAGCGGATTCAACAGCAGGAACAA 1312
Query 1396 CAAAATGGAGTAAGACTCAAGCCTTCACAAGCCCAGAAAGAGAACTGAGGAATATGAATA 1455
|||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||
Sbjct 1313 CAAAATGGAGTAAGACTCAAGCCTTCTCAACCCCAGAAAGAGAGCTGAGGAATATGAATG 1372
Query 1456 TGTCCC 1461
||||||
Sbjct 1373 TGTCCC 1378
Score = 135 bits (73), Expect = 8e-31
Identities = 157/192 (82%), Gaps = 28/192 (15%)
Strand=Plus/Plus
Query 1522 GAAG-ATAAACATTTGGGTAAGCCCAAAGAAACAGAGTTCCGTGCATTGCAAATATGCAA 1580
|||| | |||||||||| | ||||||||||||||||||| | | |||| | ||||||
Sbjct 1405 GAAGAAAAAACATTTGGAT-AGCCCAAAGAAACAGAGTT-C---C-TTGC--A-ATGCAA 1455
Query 1581 TGCACTGCAATTATTA---G-TT-G-TTTGG--A-TTTGATATAGAGACTGAGTCTCGAA 1631
|||||||||||||||| | || | ||||| | |||| ||||||||||| ||||||||
Sbjct 1456 TGCACTGCAATTATTAGTCGTTTGGATTTGGTTATTTTGGTATAGAGACTGGGTCTCGAA 1515
Query 1632 ACCATAGTATGTAAAAATATAATCACGTTCAAAAGCTGTTAATTTGTTATAATCTTATAA 1691
| ||||||||||||||| || || | || | | |||||||||||||||||||||||
Sbjct 1516 ATCATAGTATGTAAAAAAAT-AT-A--ATC---A-C-GTTAATTTGTTATAATCTTATAA 1566
Query 1692 CAATTGTGTTTT 1703
||||||||||||
Sbjct 1567 CAATTGTGTTTT 1578
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 187 TTCACACTACAGCTGATTTAGATCTATTT 215
|||||||||||||||||||||||||||||
Sbjct 86 TTCACACTACAGCTGATTTAGATCTATTT 114
> Ahg919313 jgi|Araly1|919313|scaffold_100594.1
Length=1327
Score = 784 bits (424), Expect = 0.0
Identities = 874/1081 (81%), Gaps = 72/1081 (7%)
Strand=Plus/Plus
Query 352 TCAGATGCTAATCGAATGAGTCATGATATTAGCCGTATGCTTGATAACCCACCTAAGAAG 411
||||||||||| ||| | || || ||||| ||||| |||| ||||| |||||||||||
Sbjct 171 TCAGATGCTAACCGATTCAGCCACGATATAAGCCGAATGCCGGATAATCCACCTAAGAAC 230
Query 412 ATTGGACATCGGCGAGCTCATTCTGAAATACTTACTCTCCCTGATGATTTGAGCTTTGAT 471
| || ||||| ||||||||||| || || |||||||| |||||||| ||||||||||||
Sbjct 231 CTAGGCCATCGCCGAGCTCATTCAGAGATTCTTACTCTTCCTGATGACTTGAGCTTTGAT 290
Query 472 AGTGATCTTGGTGTGGTTGGTAATGCTGCTGATGGAGCTTCTTTCTCTGATGAGACTGAA 531
|||||||||||||||||||| ||||||||||||| ||||||| |||||||| || ||
Sbjct 291 AGTGATCTTGGTGTGGTTGG---TGCTGCTGATGGACCTTCTTTTTCTGATGATACGGAT 347
Query 532 GAAGATTTGCTCTCTATGTATCTTGATATGGATAAGTTTAATTCTTCTGCTACATCTTCT 591
|| || || || | ||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 348 GAGGACTTACTGTATATGTATCTTGATATGGATAAATTCAATTCTTCTGCTACATCGACT 407
Query 592 GCCCAAGTTGGTGAGCCATCAGGAA-CTGCTTGGAAAAATGAGACAATGATGCAGACAGG 650
| ||| | |||||||||||| ||| | |||||| | | | | || || |
Sbjct 408 TCTCAAATGGGTGAGCCATCA-GAACCAGCTTGG----A-G-G---A--AT---GA-A-- 449
Query 651 CACAGGCTCAACTTCCAATCC-TCAGAATACGGTTAATAGTCT-TGGCGAAAGGCCAAGA 708
|||||| ||||| || || ||||| |||| | ||| || | ||||| || |||
Sbjct 450 -TTAGGCTCGACTTCTAA-CCTTCAGAGTACGCCTGGTAG-CTCTAATGAAAGACCGAGA 506
Query 709 ATCAGGCATCAACATAGCCAATCTATGGATGGTTCAATGAA-TATC-AA--TGAGATGCT 764
|||||||| ||||| |||||||| ||||||||||| | || |||| || |||||||||
Sbjct 507 ATCAGGCACCAACACAGCCAATCGATGGATGGTTCGA-CAACTATCAAACCTGAGATGCT 565
Query 765 TATGTC-GGGAAATGAAGATGAT-TCTGCTA-TTGA-TGCTAAG-AAGTCTATGTCTGCT 819
|||||| ||| |||||||||| | |||| | |||| | ||||| ||| | || ||||||
Sbjct 566 TATGTCAGGG-AATGAAGATG-TGTCTG-GAGTTGACT-CTAAGAAAG-CCATCTCTGCT 620
Query 820 ACTAAACTTGCTGAGCTTGCTCTCATTGATCCTAAACGTGCTAAGAGGATATGGGCAAAC 879
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 GCTAAACTTTCTGAGCTTGCTCTCATTGATCCTAAACGTGCTAAGAGGATATGGGCAAAC 680
Query 880 AGGCAGTCCGCAGC-ACGATCAAAAGAAAGGAAGACGAGATACATATTT--GAGCTTGAG 936
|| ||||| || || | | |||||||||||||||| |||||| |||| ||||| |||
Sbjct 681 AGACAGTCTGCTGCGAGG-TCAAAAGAAAGGAAGATGAGATA--TATTGCAGAGCTCGAG 737
Query 937 AGAAAAGTACAGACTTTGCAAACAGAGGCTACAACTCTCTCAGCCCAGTTGACCCTCTTA 996
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| || |||
Sbjct 738 AGAAAAGTACAGACTTTACAAACAGAGGCCACATCTCTCTCAGCCCAGTTGACTCTGTTA 797
Query 997 CAGAGAGACACAAATGGCTTGACTGTTGAAAACAATGAGCTGAAGCTGCG-GTTACAAAC 1055
|||||||| ||||||||| ||| |||||||||||||||||| || ||||| || ||||||
Sbjct 798 CAGAGAGATACAAATGGCCTGAGTGTTGAAAACAATGAGCTTAAACTGCGAGT-ACAAAC 856
Query 1056 AATGGAGCAGCAGGTTCACTTGCAGGATGAACTAAACGAAGCACTAAAGGAGGAAATCCA 1115
|||||||| ||||||||| | ||||| | |||| || ||||| ||||||||| ||||
Sbjct 857 TATGGAGCAACAGGTTCACCTACAGGACGCTTTAAATGATGCACTGAAGGAGGAAGTCCA 916
Query 1116 GCATCTGAAGGTGTTGACTGGCCAAGTTGC-TCCA-T----CAGCG-T--TGAACTATGG 1166
|||||| ||||| ||||| || |||| | | || | | || | | ||||||| ||
Sbjct 917 GCATCTTAAGGTATTGACGGGGCAAGGTCCATCAAATGGTACATCAATGATGAACTACGG 976
Query 1167 GTCGTTT-GGATCAAACCAGCAGCAATTCTATTCCAACAATCAGTCAATGCAAACAATCT 1225
|| ||| |||||||||||||| | || ||| |||| |||||||| ||||| || ||||
Sbjct 977 TTC-TTTCGGATCAAACCAGCA--ATTT-TATCCCAATAATCAGTCGATGCACACTATCT 1032
Query 1226 TAGCTGCAAAACAGTTCCAGCAACTTCAGATTCATTCACAGAagcagcaacaacaacaac 1285
|||| ||| ||||||||||||| || ||||| || |||||||| ||||| || |||||||
Sbjct 1033 TAGCCGCACAACAGTTCCAGCAGCTCCAGATCCAGTCACAGAAACAGCAGCAGCAACAAC 1092
Query 1286 aacaaca--a-caacagcaacaccaacagcagcagcagcaacagcaacagtatcagtttc 1342
|||| || | ||||| |||||||| ||||| || ||||| ||||| || | ||||||||
Sbjct 1093 AACAGCAGCAGCAACAACAACACCAGCAGCAACAACAGCAGCAGCAGCAATTTCAGTTTC 1152
Query 1343 aacagcaacaga-tgcaacagctt-at--gcagcagcGGCTTCAACAGCAAGAACAACAA 1398
| ||||| || | || | ||| || | |||||||||||||||||| || |||||||||
Sbjct 1153 AGCAGCAGCA-ACTGTATCAGTTTCAGCAGCAGCAGCGGCTTCAACAACAGGAACAACAA 1211
Query 1399 A 1399
|
Sbjct 1212 A 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65286679930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5