BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31380.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482070 jgi|Araly1|482070|fgenesh2_kg.4__1130__AT2G31380.1 1439 0.0
Ahg470616 jgi|Araly1|470616|fgenesh2_kg.1__570__AT1G06040.1 342 3e-93
Ahg482071 jgi|Araly1|482071|fgenesh2_kg.4__1131__AT2G31390.1 69.4 5e-11
> Ahg482070 jgi|Araly1|482070|fgenesh2_kg.4__1130__AT2G31380.1
Length=1064
Score = 1439 bits (779), Expect = 0.0
Identities = 1003/1103 (91%), Gaps = 47/1103 (4%)
Strand=Plus/Plus
Query 29 CCTTCTTATCTTCTTCTCTTCTCCTCAACTTGAATACACAGAAACAAAACTGCTTTTGTC 88
|||||||||||||||||||||| | ||| | | | ||||||||||||||||||||||||
Sbjct 1 CCTTCTTATCTTCTTCTCTTCT-C-CAA--TCACT-CACAGAAACAAAACTGCTTTTGTC 55
Query 89 TCTCAAGTCATTTGTCTTATAAAAAGGTTCTGTTCTTGAACAAGGGAAAG-AAACAAAAG 147
||||||||| |||||||| |||||||||| |||||||||||||| | ||| |||||| ||
Sbjct 56 TCTCAAGTCCTTTGTCTTTTAAAAAGGTTTTGTTCTTGAACAAGAG-AAGAAAACAAGAG 114
Query 148 GCTGATAACTCCTGTTTTGTAGATTCCTCTGATATTCAGATTCTTACTTCTCAGGAAAAC 207
|||||| |||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 115 GCTGAT-TTTCCTGTTTTGTAGATTCCTCTGATATTCAGATTCCCACTTCTCA-G----- 167
Query 208 CCTAAAGAAAATTTCTGtttttttttGAGAAATATGAAGATACAATGTGATGTGTGTGAG 267
| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 168 ------G-AAA--------TTTTTTTGAGAAATATGAAGATACAATGTGATGTGTGTGAG 212
Query 268 AAAGCTCCGGCCACGCTTATATGTTGTGCTGATGAAGCTGCTCTCTGCGCTAAATGTGAC 327
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 213 AAAGCTCCGGCCACGCTTATATGTTGTGCCGATGAAGCTGCTCTGTGCGCTAAATGTGAT 272
Query 328 GTTGAGGTTCATGCTGCTAATAAACTCGCTAGCAAACACCAACGCCTTTTTCTTGACTCT 387
||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||
Sbjct 273 GTTGAGGTTCATGCTGCTAATAAGTTAGCTAGTAAACACCAACGCCTTTTTCTTGACTCT 332
Query 388 CTCTCAACTAAATTCCCTCCCTGCGACATCTGCCTTGAGAAGGCAGCTTTCATATTCTGT 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 CTCTCAACTAAATTCCCTCCCTGCGACATCTGCCTTGAGAAGGCAGCTTTCATATTCTGT 392
Query 448 GTAGAGGATAGGGCTCTGCTCTGCAGAGATTGCGATGAGGCGACCCATGCGCCAAATACT 507
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 393 GTAGAGGATAGGGCTCTGCTCTGCAGAGACTGCGACGAGGCGACCCATGCACCAAATACT 452
Query 508 CGCTCTGCTAATCACCAGAGGTTCTTAGCCACTGGAATCCGAGTTGCTCTTAGTTCCACT 567
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 453 CGCTCTGCTAATCACCAGCGTTTCTTAGCCACTGGAATCCGAGTTGCTCTTAGTTCCACT 512
Query 568 AGTTGCAATCAAGAAGTGGAAAAGAATCACTTTGACCCATCTAATCAGCAGAGTCTCTCT 627
| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 513 ATTTGCAGTCAAGAAGTGGAGAAGAATCACTTTGACCCATCTAATCAGCAGAGTCTCTCT 572
Query 628 AAACCGCCAACTCAGCAACCCGCTGCTCCATCTCCTTTGTGGGCTACCGATGAATTCTTC 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 AAACCGCCAACTCAGCAACCCGCTGCTCCATCTCCTTTGTGGGCTACCGATGAATTCTTC 632
Query 688 AGCTACTCTGATCTTGACTGCAGTAATAAGGAGAAAGAGCAACTCGATCTCGGGGAGCTG 747
|||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||
Sbjct 633 CGCTACTCTGATCTTGAGTGCAGTAATAAGCAGAAAGAGCAACTCGACCTCGGGGAGCTG 692
Query 748 GATTGGCTTGCAGAGATGGGTCTGTTTGGTGACCAGCCTGATCAAGAGGCTCTACCGGTA 807
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 693 GATTGGCTTGCAGAGATGGGTCTGTTTGGTGACCAGCCTGATCAAGAGGCTCTACCGGCA 752
Query 808 GCCGAAGTTCCCGAGCTTTCCTTTTCACATTTGGCTCATGCTCATTCCTACAACAGACCT 867
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 753 GCCGAAGTTCCCGAGCTTTCCTTTTCACATTTGGCTCATGTTCATTCCTACAATAGACCT 812
Query 868 ATGAAGTCCAATGTACCCAACAAGAAGCAGAGGCTTGAGTACCGGTATGATGATGAAGAA 927
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 813 ATGAAGTCCAATGTACCCAACAAGAAGCAGAGACTTGAGTACCGGTATGATGATGATGAA 872
Query 928 GAGCACTTCCTAGTCCCCGACCTAGGCTAAACTATGGATGAATCTAC-TAAGCT-TTA-T 984
||||||||||||||||||||||||||||||||||| |||||| ||| || || ||| |
Sbjct 873 GAGCACTTCCTAGTCCCCGACCTAGGCTAAACTATAGATGAA-CTAAATA-GCACTTAGT 930
Query 985 AAT-ATATAG-CACTTGATTCGC--ATAGTCTTCGGCTCTTCGCCTTGCTTTCTCCATGA 1040
|||| | | || | || ||| | || | | |||||||||||||||||||||
Sbjct 931 TCGCATAT-GTCTCTACACGGGCTCATA-TATT-GT-T-TTCGCCTTGCTTTCTCCATGA 985
Query 1041 TCTGATATGTGTATCACTGTAAGTAGCAGGCTAAAACTTGGAAAAACCTTATCATTTTAT 1100
|||| | |||||||||||||| || ||||||||||||||||||| ||||||||||||||
Sbjct 986 TCTGGTTTGTGTATCACTGTA--TA-CAGGCTAAAACTTGGAAAA-CCTTATCATTTTAT 1041
Query 1101 TAGCAAGTGAAGCCTTAAATTGC 1123
|||||||||| ||||| ||||||
Sbjct 1042 TAGCAAGTGATGCCTTGAATTGC 1064
> Ahg470616 jgi|Araly1|470616|fgenesh2_kg.1__570__AT1G06040.1
Length=1094
Score = 342 bits (185), Expect = 3e-93
Identities = 581/763 (76%), Gaps = 63/763 (8%)
Strand=Plus/Plus
Query 241 ATGAAGATACAATGTGATGTGTGTGAGAAAGCTCCGGCCACGCTTATATGTTGTGCTGAT 300
||||||||||| |||||||||||||||||||||||||| ||| | ||||||||||| ||
Sbjct 165 ATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCCGGCGACGGTGATATGTTGTGCCGAC 224
Query 301 GAAGCTGCTCTCTG-CGCTAAATGTGACGTTGAGGTTCATGCTGCTAATAAACTCGCTAG 359
|||||||||||||| | || | || ||||| ||| ||||||| ||||| |||||||||||
Sbjct 225 GAAGCTGCTCTCTGTC-CTCACTGCGACGTCGAGATTCATGCCGCTAACAAACTCGCTAG 283
Query 360 CAAACACCAACGCCTTTTTCTTGACTCTCTCTCAACTAAATTCCCTCCCTGCGACATCTG 419
||| |||||||| ||| |||| | |||||||| || ||||||||| ||||| |||||
Sbjct 284 CAAGCACCAACGTCTTCATCTTAATTCTCTCTCCACCGAATTCCCTCGTTGCGATATCTG 343
Query 420 CCTTGAGAAGGCAGCTTTCATATTCTGTGTAGAGGATAGGGCTCTGCTCTGCAGAGATTG 479
|| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| || ||
Sbjct 344 CCAAGAGAAGGCAGCTTTCATTTTCTGTGTAGAGGATAGAGCTCTGCTTTGCAGGGACTG 403
Query 480 CGATGAGGCGACCCATG-CGCCAAATACTCGCTCTGCTAATCACCAGAGGTTCTTAGCCA 538
|||||| | | ||| | | | ||| |||| ||||||||||||||||||||||||||||
Sbjct 404 CGATGAATCCATCCACGTTG-CTAATTCTCGATCTGCTAATCACCAGAGGTTCTTAGCCA 462
Query 539 CTGGAATCCGAGTTGCTCTTAGTTCCACTAGTTGCAATCAAGAAGTGGAAAAGAATCA-C 597
|||| ||| ||| ||||| | || || || |||||| ||||| |||| ||||| || |
Sbjct 463 CTGGGATCAAAGTAGCTCTGACCTCAACGAGCTGCAATAAAGAAATGGAGAAGAACCAAC 522
Query 598 -T-----TTG-A-C--CCATCTAAT-C--AG-CAGAGTCTCT-CTAAA-CCGCCAA-CT- 639
| || | | ||| | || | | |||| || | ||||| || |||| |
Sbjct 523 CTGAGCCTTCCAACAACCAACAAAAACCTAATCAGATTC-CGGCTAAATCC-CCAAGCCA 580
Query 640 -CAGCAACC-CGCTGCTCCA--T-CTCCT-TT--GTGGGCTACCGATGAATTCTTC-AGC 690
||||||| | || || || | |||| || ||||||| || || |||||| | |
Sbjct 581 GCAGCAACAAC-CTTCTTCAGCTACTCCGCTTCCGTGGGCTGTTGACGATTTCTTCCA-C 638
Query 691 TACTCTGATCTTGACTGCAGTAATAAGGAGAAAGAGCAACTCGATCTCGGGG-AGC---- 745
| ||| ||| | || | || | || || | || | ||| || |||||||||| ||
Sbjct 639 TTCTCCGATATCGAATCCACTGATCAG-A-AAGG-GCAGCTTGATCTCGGGGCAGGGGAG 695
Query 746 T-GGATTGGCTTGCAGAGATGGG-TCTGTTTGGTGACCAGCCTGATCA-AGAGGCTCTAC 802
| ||||||| || |||| ||||| | | || ||||| || | |||| | ||||||| |
Sbjct 696 TTGGATTGGTTTTCAGACATGGGAT-TCTTCGGTGATCAAATTAATCACA-AGGCTCTTC 753
Query 803 CGGTAGCCGAAGTTCCCGAGCTTTCCT-TTTCACATTT-GGCTCATGCTCATTCCTACAA 860
| | ||| |||||||| |||||||| | |||| ||||| || ||||| |||||| |||||
Sbjct 754 CTGCAGCTGAAGTTCCTGAGCTTTC-TGTTTCGCATTTAGG-TCATGTTCATTCATACAA 811
Query 861 CAGACCTATGAAGTCCAATGTACCCAACAAGAAGCAGAGGCTT-GAGTACC-G-G-T-AT 915
| || |||||||| ||||| || ||||||||| |||| | ||| | | | | | ||
Sbjct 812 -AC-CC-ATGAAGTCGAATGTTTCCTACAAGAAGCCGAGG-TACGAG-ATCAGAGATGAT 866
Query 916 GATGATGAAGAAGAGCACTTCCTAGTCCCCGACCTAGGCTAAA 958
|||||||| || |||||||| | ||||| || || |||||||
Sbjct 867 GATGATGATGAGGAGCACTTTATTGTCCCTGATCTTGGCTAAA 909
> Ahg482071 jgi|Araly1|482071|fgenesh2_kg.4__1131__AT2G31390.1
Length=1239
Score = 69.4 bits (37), Expect = 5e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Minus
Query 1083 AAAACCTTATCATTTTATTAGCAAGTGAAGCCTTAAATTGCAA 1125
|||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1239 AAAACCTTATCATTTTATTAGCAAGTGATGCCTTGAATTGCAA 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5