BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31390.1
Length=1283
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482071 jgi|Araly1|482071|fgenesh2_kg.4__1131__AT2G31390.1 1927 0.0
Ahg482070 jgi|Araly1|482070|fgenesh2_kg.4__1130__AT2G31380.1 67.6 2e-10
> Ahg482071 jgi|Araly1|482071|fgenesh2_kg.4__1131__AT2G31390.1
Length=1239
Score = 1927 bits (1043), Expect = 0.0
Identities = 1178/1243 (95%), Gaps = 9/1243 (1%)
Strand=Plus/Plus
Query 41 ATTTTTCTCAATTCTCCGATTTGATCCAACGATTTCACAGATCTCTGATCTAA-ATGGCA 99
||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1 ATTTTTCTCGATTCTCCGATTTGATCCAACGA-TTCACAGATCTCTGATCTAATATGGCA 59
Query 100 TCCAACGGTGATAAAGGACTGATCGTTAGCTTCGGCGAGATGCTAATCGATTTCGTCCCT 159
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCCAACGGTGATAAAGGACTGATCGTTAGCTTCGGCGAGATGCTAATCGATTTCGTCCCA 119
Query 160 ACCGAATCAGGCGTCTCTCTCGCCGAAGCTCCTGGATTCCTCAAAGCTCCAGGCGGTGCT 219
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACCGAATCCGGCGTCTCACTCGCCGAAGCTCCTGGATTCCTCAAAGCTCCAGGCGGTGCT 179
Query 220 CCCGCTAACGTCGCAATCGCTGTTTCTCGTCTCGGTGGACGATCTGCTTTCGTCGGAAAA 279
||||| |||||||||||||| ||||||||||||||||||||||| || |||||||| |||
Sbjct 180 CCCGCAAACGTCGCAATCGCCGTTTCTCGTCTCGGTGGACGATCCGCCTTCGTCGGGAAA 239
Query 280 CTTGGAGACGACGAGTTCGGTCATATGTTGGCTGGGATTTTGAGGAAGAACGGTGTTGAT 339
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 240 CTTGGAGACGACGAGTTCGGTCATATGTTGGCTGGGATTCTGAGGAAGAACGGTGTCGAT 299
Query 340 GATCAGGGGATTAACTTCGATACTGGAGCTAGAACTGCTTTAGCTTTCGTTACGTTACGT 399
||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||
Sbjct 300 GATCAGGGGATTAACTTCGATACAGGAGCTAGAACAGCTCTAGCTTTCGTTACGTTACGT 359
Query 400 GCTGATGGAGATCGTGAGTTTATGTTTTACCGCAATCCTAGCGCCGATATGCTTCTTCGT 459
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 360 GCTGATGGAGATCGTGAGTTTATGTTTTACCGGAATCCTAGCGCCGATATGCTTCTCCGT 419
Query 460 CCTGATGAACTCAATCTCGACCTCATCAGATCCGCGAAAGTGTTTCACTATGGATCAATA 519
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCTGATGAGCTCAATCTCGACCTCATCAGATCCGCGAAAGTGTTTCACTATGGATCAATA 479
Query 520 AGTTTGATAGTGGAGCCGTGTAGGTCAGCTCATTTGAAGGCCATGGAAGTGGCGAAAGAA 579
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGTTTGATAGTGGAGCCGTGTAGGTCAGCTCATTTGAAGGCCATGGAAGTGGCGAAAGAG 539
Query 580 GCAGGAGCTCTTCTTTCCTATGACCCAAACCTCAGGGAGCCTCTGTGGCCATCAAAAGAA 639
|| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||
Sbjct 540 GCCGGAGCTCTTCTTTCCTATGACCCAAACCTTAGGGAACCTTTGTGGCCATCAAAGGAA 599
Query 640 GAAGCCAAAACACAGATCATGAGCATTTGGGACAAAGCTGAGATCATCAAGGTGAGCGAT 699
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 GAAGCCAAGACACAGATCATGAGCATCTGGGACAAAGCTGAGATCATCAAGGTGAGCGAT 659
Query 700 GTTGAGCTTGAGTTTCTAACTGGAAGCAACAAGATTGATGATGAGACCGCGTTGACCTTG 759
|||||||||||||||||||||||||||||||| || |||||||||||||| ||| |||||
Sbjct 660 GTTGAGCTTGAGTTTCTAACTGGAAGCAACAAAATCGATGATGAGACCGCATTGTCCTTG 719
Query 760 TGGCATCCCAACTTGAAGCTGTTG-TTAGTCACTCTTGGTGAAAAGGGCTGTCGGTATTA 818
|||||||||||||||||||| ||| || || ||||| |||||||||||||||||||||||
Sbjct 720 TGGCATCCCAACTTGAAGCTCTTGCTT-GTTACTCTCGGTGAAAAGGGCTGTCGGTATTA 778
Query 819 CACCAAGACTTTCAAAGGAGCCGTTGACCCTTTCCATGTGAACGCTGTGGACACAACCGG 878
||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 779 CACCAAGACATTCAAAGGATCTGTTGACCCTTTCCATGTGAACGCTGTGGATACAACCGG 838
Query 879 AGCTGGAGATTCCTTTGTCGGTGCTCTTCTAAACCAGATTGTCGATGATCGATCCGTTCT 938
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 839 AGCTGGAGATTCCTTTGTCGGCGCTCTCCTAAACCAGATTGTCGATGATCGATCCGTTCT 898
Query 939 CGAGGACGAAGAGAGATTGAGGAAAGTGCTGAGATTCGCAAATGCTTGTGGAGCAATCAC 998
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 899 CGAGGACGAAGAAAAATTGAGAAAAGTGCTGAGATTCGCAAATGCTTGTGGAGCAATCAC 958
Query 999 AACGACCAAAAAAGGAGCCATTCCAGCTCTTCCCTCAGATGCTGAAGTTCGGAGCTTTCT 1058
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 959 CACGACCAAGAAAGGAGCCATTCCAGCTCTTCCCTCAGATGCTGAAGTTCGCAGCTTTCT 1018
Query 1059 CGAAAAGAAATAGAAACAAAA-CAACTCAAGCTTCTATTACGTAATCTGTTTCCGCGA-T 1116
|||||||||||||||||||| ||||||||||||||| ||||||||||||| |||| |
Sbjct 1019 TGAAAAGAAATAGAAACAAAAACAACTCAAGCTTCTACCACGTAATCTGTTTTCGCGGCT 1078
Query 1117 TATCTTCTCTTTTTGTATTCTTGTTTTCGGATGGTTGAA-TCGAGAAGAGAAACAAATTC 1175
| ||||| ||||||||||||||||||||| ||||||||| |||||||||||||| |||||
Sbjct 1079 T-TCTTCGCTTTTTGTATTCTTGTTTTCGAATGGTTGAAATCGAGAAGAGAAACGAATTC 1137
Query 1176 GGCATTCCGCTCTGTTTTTGTTTCTCTTCTTCAAATGTAATGATTTAGAAAAGACGTATG 1235
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1138 AGCATTCCGCTCTGTTTTTGTTACTCTTCTTCAAATGTAATGATTTA-AAAAGACGTATG 1196
Query 1236 TTGCAATTTAAGGCTTCACTTGCTAATAAAATGATAAGGTTTT 1278
|||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1197 TTGCAATTCAAGGCATCACTTGCTAATAAAATGATAAGGTTTT 1239
> Ahg482070 jgi|Araly1|482070|fgenesh2_kg.4__1130__AT2G31380.1
Length=1064
Score = 67.6 bits (36), Expect = 2e-10
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand=Plus/Minus
Query 1238 GCAATTTAAGGCTTCACTTGCTAATAAAATGATAAGGTTTTTCCAA 1283
|||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct 1064 GCAATTCAAGGCATCACTTGCTAATAAAATGATAAGGTTTT-CCAA 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47958629586
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5