BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31410.1
Length=830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933688 jgi|Araly1|933688|scaffold_401676.1 955 0.0
> Ahg933688 jgi|Araly1|933688|scaffold_401676.1
Length=641
Score = 955 bits (517), Expect = 0.0
Identities = 604/645 (94%), Gaps = 9/645 (1%)
Strand=Plus/Plus
Query 12 GCCACACAAAGAAG-A-GAAGAAATGGCTTGCACCGTAGATTTCCGGTGCCTTGACGAAG 69
||||||| |||||| | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3 GCCACACGAAGAAGAAGGAA-AAATGGCTTGCACCGTAGATTTCCGGTGCCTTGACGAAG 61
Query 70 GATTCGGCGGCAAAACCTACAAACGCAAACGCGAATCTCAAGAACAAGCCGCCGCCGAAG 129
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 62 GATTCGGCGGCAAAACCTACAAACGTAAACGCGAATCTCAAGAACAAGCCGCCGCCGAAG 121
Query 130 CAATCGCCGATGAAGCTTCCATGGACATCGATGGTGCTCCTCCTGCCGCGAAACGTAGCG 189
|||||||||||||||| || |||||||||||||||||||||||| |||| ||||| ||||
Sbjct 122 CAATCGCCGATGAAGCATCTATGGACATCGATGGTGCTCCTCCTTCCGCAAAACGCAGCG 181
Query 190 CCGTCGCTTCCTCTGAAAATCCAGACAAACCTATTGCTCTAGCTGTCGAGAGACCAACCT 249
|||||||||||||||||||||| ||||||||||||||| | || || |||||||| ||||
Sbjct 182 CCGTCGCTTCCTCTGAAAATCCTGACAAACCTATTGCTGTGGCGGTTGAGAGACCGACCT 241
Query 250 ACGACGGTGTAATCGCCGGGAAAGTCTCCGGACGGAACTGGAAACAGCCGCGAACTCATA 309
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 242 ACGACGGTGTAATCGCCGGGAAAGTCTCCGGACGGAATTGGAAACAGCCGCGAACTCATA 301
Query 310 GATCTTCAGGGAGGTTTGTGAAGAACAGGAAACCAGATCTGGAGGAGATGAAGAGGCA-A 368
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 302 GATCTTCGGGGAGGTTTGTGAAGAACAGGAAACCAGATCTGGAGGAGATGAAGAGGCAGA 361
Query 369 AGGGAGATTAAGAAAGCGTATAAGGAGAGGGTGAATGAGCTgaaggaagagattaggagt 428
||| ||||||||| ||||||||||||||| |||||||||| |||||||||||||||| |
Sbjct 362 AGG-AGATTAAGAGAGCGTATAAGGAGAGAATGAATGAGCTTAAGGAAGAGATTAGGAAT 420
Query 429 aataaggttgagaagaggaagaagaaggaagagagagagaagcggaagaaggagaaTGTT 488
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 AATAAGGTTGAGAAGAGGAAGAAGAAGGAAGAGAGAGAGAAGAGGAAGAAGGAGAATGTT 480
Query 489 TTGAGAACTGGTACTAAGTTGCAGAAGATTACAAATCCCAAGACTTTGAAGAAAATTTCT 548
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 481 TTGAGAACTGGTACTAAGTTGCAGAAGATTACAAATCCTAAGACTTTGAAGAAAATTGCT 540
Query 549 ATGTCTAAGAAGCAGAGGAAGCAGCTTAAGAAAATTCCTGACGAGATGTTGAGTGGTGGT 608
| ||||||| ||||||||||| || ||||| |||||||| ||||||||||||||||||
Sbjct 541 AAGTCTAAG---CAGAGGAAGCATCTCAAGAATATTCCTGAGGAGATGTTGAGTGGTGGT 597
Query 609 AGCAAGAAGAGTATCACGAATTAGTGGTTTTTTGTTCCTTCTCTT 653
||||||||||||||||| |||||| ||||||| |||| || ||||
Sbjct 598 AGCAAGAAGAGTATCACAAATTAGGGGTTTTT-GTTCTTTATCTT 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30688948185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5