BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G31420.1

Length=638
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933689 jgi|Araly1|933689|scaffold_401677.1                        226    2e-58


> Ahg933689 jgi|Araly1|933689|scaffold_401677.1
Length=563

 Score =  226 bits (122),  Expect = 2e-58
 Identities = 188/218 (86%), Gaps = 12/218 (6%)
 Strand=Plus/Plus

Query  394  GTTTGAAAGTGTTTTTGGTGGATCCTGAA-TCG-GATAAGCATGTCGTTTATTTAAAGAA  451
            ||||||||||| |||||||||||||| || ||| | |||||||| |||| |||||| |||
Sbjct  273  GTTTGAAAGTGGTTTTGGTGGATCCT-AAGTCGCG-TAAGCATGACGTTGATTTAAGGAA  330

Query  452  GTGGAATGGTAAT----AC--AGTTTGGAAATATGTGTT-AAGTCATGGTTGGAACAATG  504
            |||||| ||||||    ||   ||||||||||||||||| || | ||||||||||||| |
Sbjct  331  GTGGAAAGGTAATGGAAACGGGGTTTGGAAATATGTGTTCAA-TAATGGTTGGAACAAAG  389

Query  505  TGATTGATaaaaaaaTCTTCAAAGTCAATGACGTGATTGAAATCTGGTCCTTTCGAGATG  564
            ||||||  | |||||||||  |||||||| || |||||||||||||||||||||||||||
Sbjct  390  TGATTGCCACAAAAATCTTTGAAGTCAATCACATGATTGAAATCTGGTCCTTTCGAGATG  449

Query  565  GAAGTGGAAAACTTTGCTTTGCTCTCTCTTCTCCAACC  602
            ||||||||||| |||| ||||||||||||||||| |||
Sbjct  450  GAAGTGGAAAAATTTGTTTTGCTCTCTCTTCTCCGACC  487


 Score =  156 bits (84),  Expect = 2e-37
 Identities = 131/153 (86%), Gaps = 5/153 (3%)
 Strand=Plus/Plus

Query  162  AGTCCCGAAACATGCAATTCTTCGATACCAGACTGGCTCGTGAAAGTGATGAGAAAAGAG  221
            |||||||||||| || |   |||||||||||||||||| |||||||||||||||||||||
Sbjct  125  AGTCCCGAAACACGCGA---TTCGATACCAGACTGGCTTGTGAAAGTGATGAGAAAAGAG  181

Query  222  AATGGATACGATCCAAAGCTGATCATAAAGAGGAGGGTGCTGTGTACGA-CTGATCTCCG  280
            |||||||||||||||||||| ||||||||||||| |  |||| || | | ||||||||  
Sbjct  182  AATGGATACGATCCAAAGCTAATCATAAAGAGGAAGCAGCTG-GTTCAAACTGATCTCAA  240

Query  281  TAAAAACCAGGGGTGTCTCTCAATGCATCTCAG  313
             | || |||   |||||||||||||||||||||
Sbjct  241  CACAACCCAATCGTGTCTCTCAATGCATCTCAG  273



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23369348121


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5